Wall clock time and date at job start Tue Mar 31 2020 19:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35356 * 116.99695 * 2 1 4 4 N 1.30554 * 125.44291 * 180.35057 * 3 2 1 5 5 C 1.36336 * 108.38131 * 180.16257 * 4 3 2 6 6 C 1.47359 * 126.41277 * 179.82230 * 5 4 3 7 7 O 1.21620 * 120.00047 * 179.68577 * 6 5 4 8 8 N 1.34773 * 120.00421 * 359.68471 * 6 5 4 9 9 C 1.48246 * 125.78145 * 359.97438 * 8 6 5 10 10 C 1.52332 * 105.86615 * 176.81239 * 9 8 6 11 11 H 1.09000 * 110.24236 * 272.17805 * 10 9 8 12 12 C 1.51442 * 117.45129 * 145.32067 * 10 9 8 13 13 C 1.53839 * 107.04272 * 181.22652 * 12 10 9 14 14 C 1.52529 * 111.65684 * 57.20106 * 13 12 10 15 15 C 1.53824 * 111.70276 * 305.95125 * 14 13 12 16 16 H 1.09004 * 109.94185 * 298.08158 * 15 14 13 17 17 N 1.46496 * 109.94295 * 176.91592 * 15 14 13 18 18 C 1.36945 * 119.99718 * 85.00360 * 17 15 14 19 19 H 1.07997 * 119.99756 * 359.97438 * 18 17 15 20 20 C 1.38805 * 119.99878 * 179.97438 * 18 17 15 21 21 N 1.31624 * 120.00257 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47174 * 270.00277 * 22 20 18 24 24 H 1.48501 * 109.47062 * 30.00228 * 22 20 18 25 25 H 1.48499 * 109.46981 * 150.00382 * 22 20 18 26 26 C 1.51618 * 107.02043 * 57.53899 * 15 14 13 27 27 H 1.09009 * 110.50434 * 55.20166 * 26 15 14 28 28 C 1.48665 * 125.79081 * 179.97438 * 8 6 5 29 29 C 1.35920 * 107.17002 * 359.55533 * 5 4 3 30 30 O 1.34202 * 125.44709 * 0.02562 * 3 2 1 31 31 H 1.09002 * 109.47552 * 300.00328 * 1 2 3 32 32 H 1.08999 * 109.46871 * 60.00271 * 1 2 3 33 33 H 1.08996 * 109.46850 * 180.02562 * 1 2 3 34 34 H 1.09007 * 110.17392 * 57.71721 * 9 8 6 35 35 H 1.08993 * 110.17395 * 295.91644 * 9 8 6 36 36 H 1.09004 * 109.93942 * 61.84457 * 12 10 9 37 37 H 1.09002 * 109.93740 * 300.61258 * 12 10 9 38 38 H 1.09004 * 109.04294 * 296.64329 * 13 12 10 39 39 H 1.08991 * 109.04576 * 177.75829 * 13 12 10 40 40 H 1.09000 * 109.03374 * 185.38437 * 14 13 12 41 41 H 1.08995 * 108.97548 * 66.48426 * 14 13 12 42 42 H 0.96996 * 120.00499 * 265.00091 * 17 15 14 43 43 H 0.97001 * 119.99885 * 179.97438 * 21 20 18 44 44 H 1.08997 * 110.62191 * 37.13184 * 28 8 6 45 45 H 1.08997 * 110.76272 * 274.18044 * 28 8 6 46 46 H 1.08004 * 126.45115 * 180.25923 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0434 1.2061 0.0000 4 7 3.3348 1.3978 -0.0065 5 6 3.5700 2.7407 -0.0004 6 6 4.8891 3.3977 -0.0008 7 8 4.9638 4.6116 -0.0006 8 7 6.0127 2.6535 -0.0013 9 6 6.0712 1.1722 -0.0009 10 6 7.5495 0.8137 -0.0832 11 1 7.8672 0.7603 -1.1245 12 6 8.0104 -0.4228 0.6597 13 6 9.5289 -0.5396 0.4422 14 6 10.2627 0.7128 0.9110 15 6 9.6901 1.9842 0.2615 16 1 9.8149 1.9375 -0.8204 17 7 10.3719 3.1670 0.7925 18 6 11.5540 3.5819 0.2394 19 1 11.9836 3.0368 -0.5880 20 6 12.1998 4.7030 0.7421 21 7 11.6763 5.3671 1.7509 22 14 13.8125 5.2685 -0.0120 23 1 14.9443 4.6092 0.6878 24 1 13.8407 4.9042 -1.4513 25 1 13.9348 6.7418 0.1282 26 6 8.2158 2.0361 0.6119 27 1 8.0782 1.9871 1.6922 28 6 7.4034 3.1787 -0.0023 29 6 2.3601 3.3600 0.0001 30 8 1.4226 2.3958 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 5.5395 0.7747 -0.8656 35 1 5.6398 0.7791 0.9196 36 1 7.5089 -1.3046 0.2610 37 1 7.7940 -0.3198 1.7231 38 1 9.7256 -0.6907 -0.6192 39 1 9.9027 -1.3996 0.9978 40 1 11.3176 0.6250 0.6508 41 1 10.1693 0.7938 1.9939 42 1 9.9862 3.6564 1.5358 43 1 12.1279 6.1503 2.1024 44 1 7.4756 4.0753 0.6133 45 1 7.7380 3.3845 -1.0190 46 1 2.1848 4.4257 0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992750251.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:45 Heat of formation + Delta-G solvation = -48.708891 kcal Electronic energy + Delta-G solvation = -29379.887635 eV Core-core repulsion = 25271.321725 eV Total energy + Delta-G solvation = -4108.565910 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.55091 -41.54447 -39.97737 -39.61107 -36.97755 -36.04943 -35.55652 -33.26832 -31.92614 -31.05630 -30.48604 -28.28588 -28.08237 -26.64689 -25.46424 -24.20435 -23.40493 -22.10147 -21.61199 -21.11158 -21.01602 -19.50451 -19.07689 -18.58567 -18.24021 -17.40935 -17.18612 -16.62088 -16.60122 -16.25316 -16.00615 -15.68332 -15.54964 -15.33368 -15.07858 -14.73689 -14.56205 -14.17994 -13.85168 -13.60630 -13.41009 -13.26515 -13.07142 -12.94479 -12.85391 -12.79579 -12.59134 -12.20261 -12.09510 -11.99334 -11.88881 -11.82508 -11.70023 -11.46762 -11.37058 -11.22267 -10.86291 -10.80627 -9.95412 -9.62338 -8.96166 -7.90579 -5.18511 -0.00959 0.87737 0.91561 1.47492 1.49052 1.57205 1.60571 1.89979 2.12515 2.58018 3.11295 3.39920 3.42287 3.67978 3.73538 3.79568 4.05487 4.12596 4.22327 4.23087 4.26970 4.27325 4.40487 4.45395 4.51000 4.58467 4.61175 4.62589 4.67918 4.70178 4.72742 4.84111 4.88609 4.94906 5.09662 5.15177 5.29766 5.35833 5.41061 5.43629 5.51664 5.55432 5.61918 5.72036 6.31013 6.31791 6.46440 6.91889 7.37151 8.13816 8.36350 9.33012 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018433 B = 0.002744 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.670277 B =10202.834304 C =11484.745230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.253 6.253 3 C 0.382 3.618 4 N -0.473 5.473 5 C -0.070 4.070 6 C 0.607 3.393 7 O -0.574 6.574 8 N -0.606 5.606 9 C 0.135 3.865 10 C -0.095 4.095 11 H 0.088 0.912 12 C -0.092 4.092 13 C -0.107 4.107 14 C -0.129 4.129 15 C 0.192 3.808 16 H 0.048 0.952 17 N -0.735 5.735 18 C -0.231 4.231 19 H 0.076 0.924 20 C -0.079 4.079 21 N -0.971 5.971 22 Si 0.968 3.032 23 H -0.288 1.288 24 H -0.269 1.269 25 H -0.300 1.300 26 C -0.097 4.097 27 H 0.073 0.927 28 C 0.129 3.871 29 C 0.030 3.970 30 O -0.214 6.214 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.146 0.854 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.093 0.907 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.042 0.958 41 H 0.041 0.959 42 H 0.371 0.629 43 H 0.248 0.752 44 H 0.052 0.948 45 H 0.066 0.934 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.610 -16.078 -4.552 30.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.161 6.161 3 C 0.136 3.864 4 N -0.219 5.219 5 C -0.188 4.188 6 C 0.395 3.605 7 O -0.455 6.455 8 N -0.337 5.337 9 C 0.013 3.987 10 C -0.114 4.114 11 H 0.106 0.894 12 C -0.130 4.130 13 C -0.145 4.145 14 C -0.169 4.169 15 C 0.083 3.917 16 H 0.066 0.934 17 N -0.374 5.374 18 C -0.363 4.363 19 H 0.094 0.906 20 C -0.271 4.271 21 N -0.622 5.622 22 Si 0.798 3.202 23 H -0.215 1.215 24 H -0.194 1.194 25 H -0.226 1.226 26 C -0.117 4.117 27 H 0.092 0.908 28 C 0.008 3.992 29 C -0.042 4.042 30 O -0.105 6.105 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.164 0.836 34 H 0.105 0.895 35 H 0.095 0.905 36 H 0.112 0.888 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.202 0.798 43 H 0.057 0.943 44 H 0.070 0.930 45 H 0.084 0.916 46 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -25.060 -16.156 -4.702 30.185 hybrid contribution 0.446 1.726 0.247 1.800 sum -24.613 -14.430 -4.455 28.877 Atomic orbital electron populations 1.23701 0.72669 1.07779 1.03837 1.86423 1.26064 1.14674 1.88941 1.23556 0.85542 0.80278 0.97060 1.71153 1.10676 1.15420 1.24654 1.21282 0.95039 0.89089 1.13407 1.16662 0.82178 0.85110 0.76501 1.90829 1.86979 1.14008 1.53696 1.49056 1.05115 1.09045 1.70495 1.21789 0.96255 0.77211 1.03400 1.21947 0.93112 0.95400 1.00972 0.89417 1.21269 0.95207 0.96456 1.00041 1.21487 0.94676 0.96500 1.01808 1.22135 0.99349 0.95566 0.99856 1.20195 0.88713 0.86633 0.96136 0.93445 1.42629 1.24588 1.30388 1.39823 1.19595 0.98301 1.07020 1.11367 0.90566 1.25520 1.02632 0.99198 0.99723 1.69829 1.41608 1.21499 1.29314 0.85205 0.80091 0.76570 0.78327 1.21516 1.19389 1.22645 1.22175 0.94926 0.94774 0.99859 0.90845 1.21778 0.79615 0.97195 1.00657 1.25472 0.83904 0.94738 1.00134 1.84425 1.38959 1.15582 1.71550 0.90611 0.90536 0.83572 0.89550 0.90452 0.88834 0.91694 0.91479 0.90779 0.93946 0.94013 0.79803 0.94278 0.92960 0.91601 0.72065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 10.73 113.37 1.22 1.28 16 2 O -0.25 -3.73 10.55 -64.25 -0.68 -4.41 16 3 C 0.38 7.40 8.98 130.43 1.17 8.57 16 4 N -0.47 -11.57 8.92 -419.38 -3.74 -15.31 16 5 C -0.07 -1.83 6.83 40.31 0.28 -1.56 16 6 C 0.61 20.20 7.86 86.64 0.68 20.88 16 7 O -0.57 -22.71 17.18 -4.09 -0.07 -22.78 16 8 N -0.61 -19.55 3.38 -816.80 -2.76 -22.31 16 9 C 0.13 3.45 5.24 85.82 0.45 3.90 16 10 C -0.09 -2.37 2.31 -10.62 -0.02 -2.39 16 11 H 0.09 2.14 7.92 -2.39 -0.02 2.12 16 12 C -0.09 -1.91 5.70 30.37 0.17 -1.74 16 13 C -0.11 -2.52 5.83 30.72 0.18 -2.34 16 14 C -0.13 -4.35 5.45 30.72 0.17 -4.18 16 15 C 0.19 7.42 2.51 44.82 0.11 7.53 16 16 H 0.05 1.87 7.94 -2.38 -0.02 1.85 16 17 N -0.74 -37.26 5.10 -323.78 -1.65 -38.91 16 18 C -0.23 -12.88 9.95 84.03 0.84 -12.05 16 19 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 20 C -0.08 -4.62 5.50 84.86 0.47 -4.15 16 21 N -0.97 -61.13 13.06 21.65 0.28 -60.85 16 22 Si 0.97 47.24 29.55 68.60 2.03 49.27 16 23 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 24 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 25 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 26 C -0.10 -3.25 1.99 -10.33 -0.02 -3.27 16 27 H 0.07 2.58 8.01 -2.38 -0.02 2.56 16 28 C 0.13 4.76 6.49 85.98 0.56 5.31 16 29 C 0.03 0.57 11.93 67.28 0.80 1.37 16 30 O -0.21 -3.56 10.20 18.90 0.19 -3.37 16 31 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 33 H 0.15 -0.12 8.14 -2.39 -0.02 -0.14 16 34 H 0.09 2.09 7.54 -2.38 -0.02 2.07 16 35 H 0.08 1.94 7.84 -2.39 -0.02 1.93 16 36 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.06 1.39 8.03 -2.39 -0.02 1.37 16 38 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 39 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.37 20.59 7.79 -92.71 -0.72 19.87 16 43 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 44 H 0.05 2.25 8.07 -2.39 -0.02 2.23 16 45 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 46 H 0.26 3.22 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -75.33 377.19 0.92 -74.41 By element: Atomic # 1 Polarization: 26.82 SS G_CDS: 0.27 Total: 27.09 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: 7.04 Total: 17.16 kcal Atomic # 7 Polarization: -129.50 SS G_CDS: -7.87 Total: -137.37 kcal Atomic # 8 Polarization: -30.00 SS G_CDS: -0.56 Total: -30.55 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 2.03 Total: 49.27 kcal Total: -75.33 0.92 -74.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992750251.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.697 kcal (2) G-P(sol) polarization free energy of solvation -75.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds