Wall clock time and date at job start Tue Mar 31 2020 19:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35686 * 116.99458 * 2 1 4 4 C 1.38738 * 119.57967 * 180.02562 * 3 2 1 5 5 C 1.39719 * 119.07830 * 179.97438 * 4 3 2 6 6 C 1.48179 * 120.86166 * 179.97438 * 5 4 3 7 7 O 1.21510 * 119.99866 * 130.23129 * 6 5 4 8 8 N 1.34771 * 119.99904 * 310.22403 * 6 5 4 9 9 C 1.46927 * 120.63148 * 3.51023 * 8 6 5 10 10 C 1.52764 * 109.00595 * 233.57729 * 9 8 6 11 11 C 1.53044 * 109.38463 * 305.59052 * 10 9 8 12 12 N 1.46495 * 109.44619 * 181.25165 * 11 10 9 13 13 C 1.36940 * 119.99979 * 84.94074 * 12 11 10 14 14 H 1.07994 * 119.99907 * 359.97438 * 13 12 11 15 15 C 1.38815 * 120.00249 * 179.97438 * 13 12 11 16 16 N 1.31620 * 120.00300 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 119.99629 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47597 * 90.00028 * 17 15 13 19 19 H 1.48507 * 109.46980 * 209.99774 * 17 15 13 20 20 H 1.48503 * 109.47462 * 329.99605 * 17 15 13 21 21 C 1.53038 * 109.53908 * 61.23904 * 11 10 9 22 22 C 1.46931 * 120.62868 * 183.78132 * 8 6 5 23 23 C 1.39726 * 118.27603 * 359.97438 * 5 4 3 24 24 C 1.38743 * 119.07670 * 0.06108 * 23 5 4 25 25 O 1.35680 * 119.58221 * 179.97438 * 24 23 5 26 26 C 1.42898 * 117.00031 * 179.97438 * 25 24 23 27 27 N 1.32254 * 119.58438 * 0.02562 * 3 2 1 28 28 H 1.09003 * 109.46859 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47009 * 299.99882 * 1 2 3 30 30 H 1.09002 * 109.47645 * 60.00222 * 1 2 3 31 31 H 1.08000 * 120.45946 * 359.71946 * 4 3 2 32 32 H 1.08992 * 109.58450 * 353.41219 * 9 8 6 33 33 H 1.09003 * 109.58694 * 113.84380 * 9 8 6 34 34 H 1.08995 * 109.56223 * 185.54883 * 10 9 8 35 35 H 1.09003 * 109.35888 * 65.49613 * 10 9 8 36 36 H 1.08999 * 109.45864 * 301.21825 * 11 10 9 37 37 H 0.97004 * 120.00226 * 264.93045 * 12 11 10 38 38 H 0.96998 * 119.99797 * 179.97438 * 16 15 13 39 39 H 1.09003 * 109.49555 * 178.68754 * 21 11 10 40 40 H 1.08994 * 109.52950 * 58.60183 * 21 11 10 41 41 H 1.08998 * 109.58527 * 246.15987 * 22 8 6 42 42 H 1.08997 * 109.58477 * 6.44175 * 22 8 6 43 43 H 1.07998 * 120.45987 * 180.02562 * 23 5 4 44 44 H 1.08998 * 109.47028 * 179.97438 * 26 25 24 45 45 H 1.08993 * 109.46976 * 299.99954 * 26 25 24 46 46 H 1.09002 * 109.47071 * 59.99620 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 6 3.4309 1.2716 -0.0005 5 6 4.0542 2.5221 -0.0011 6 6 5.5317 2.6349 -0.0011 7 8 6.0857 3.3586 -0.8048 8 7 6.2609 1.9351 0.8904 9 6 5.6119 0.9982 1.8175 10 6 6.0286 1.3431 3.2462 11 6 7.5560 1.3632 3.3390 12 7 7.9571 1.6644 4.7154 13 6 8.0438 0.6574 5.6393 14 1 7.8160 -0.3588 5.3534 15 6 8.4243 0.9427 6.9435 16 7 8.5071 -0.0251 7.8316 17 14 8.8175 2.7006 7.4382 18 1 7.5806 3.3688 7.9164 19 1 9.8288 2.6943 8.5257 20 1 9.3559 3.4362 6.2659 21 6 8.1119 2.4358 2.3996 22 6 7.7195 2.0991 0.9576 23 6 3.2481 3.6634 -0.0016 24 6 1.8687 3.5147 -0.0003 25 8 1.0763 4.6160 -0.0002 26 6 -0.3361 4.3990 0.0006 27 7 1.3165 2.3129 0.0005 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 4.0198 0.3663 0.0036 32 1 4.5293 1.0823 1.7237 33 1 5.9229 -0.0204 1.5851 34 1 5.6321 0.5951 3.9327 35 1 5.6352 2.3248 3.5103 36 1 7.9502 0.3886 3.0510 37 1 8.1614 2.5772 4.9723 38 1 8.7734 0.1743 8.7428 39 1 9.1983 2.4654 2.4836 40 1 7.6994 3.4074 2.6714 41 1 8.2058 1.1722 0.6535 42 1 8.0272 2.9077 0.2946 43 1 3.6927 4.6476 -0.0024 44 1 -0.8513 5.3595 0.0010 45 1 -0.6177 3.8356 -0.8890 46 1 -0.6167 3.8362 0.8909 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996771620.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:23 Heat of formation + Delta-G solvation = -42.677139 kcal Electronic energy + Delta-G solvation = -29251.350984 eV Core-core repulsion = 25143.046630 eV Total energy + Delta-G solvation = -4108.304354 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.46201 -40.09059 -39.23681 -37.71226 -37.13391 -34.74089 -33.11969 -31.96773 -31.07584 -30.63762 -29.84838 -28.26928 -26.93707 -25.67937 -23.97553 -23.77594 -22.95864 -22.11437 -20.70895 -19.78329 -18.57758 -18.25213 -17.54486 -17.01497 -16.71631 -16.31798 -16.25357 -15.87094 -15.86404 -15.15694 -15.07972 -14.86431 -14.14431 -14.09841 -13.91635 -13.58105 -13.55256 -13.25191 -13.00618 -12.74899 -12.47468 -12.42874 -12.18049 -12.02371 -11.95708 -11.84250 -11.16004 -11.06473 -10.95509 -10.93985 -10.61468 -10.55982 -10.29093 -10.18543 -9.93714 -9.83032 -9.62536 -8.97153 -8.68636 -8.50526 -7.32094 -5.81010 -3.17026 0.53732 0.84934 2.36858 2.49132 2.83893 2.94484 3.35156 3.38505 3.38843 3.43490 3.81408 4.27214 4.55859 4.59317 4.72725 4.87966 4.90118 4.93064 4.96475 4.97188 5.02442 5.06423 5.16590 5.23013 5.26731 5.28082 5.41231 5.43715 5.53929 5.58884 5.75234 5.76334 5.83055 5.87140 6.05412 6.10708 6.21725 6.32859 6.45084 6.47112 6.74209 6.89103 6.98085 7.26885 7.33216 7.94209 7.94550 8.38073 9.16184 9.88993 10.08513 11.37160 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013200 B = 0.002869 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.743384 B = 9756.164347 C =10151.085836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.300 6.300 3 C 0.361 3.639 4 C -0.200 4.200 5 C -0.006 4.006 6 C 0.563 3.437 7 O -0.531 6.531 8 N -0.593 5.593 9 C 0.094 3.906 10 C -0.152 4.152 11 C 0.183 3.817 12 N -0.748 5.748 13 C -0.245 4.245 14 H 0.091 0.909 15 C 0.005 3.995 16 N -0.933 5.933 17 Si 0.884 3.116 18 H -0.285 1.285 19 H -0.291 1.291 20 H -0.277 1.277 21 C -0.143 4.143 22 C 0.117 3.883 23 C -0.180 4.180 24 C 0.363 3.637 25 O -0.301 6.301 26 C 0.040 3.960 27 N -0.585 5.585 28 H 0.099 0.901 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.154 0.846 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.361 0.639 38 H 0.260 0.740 39 H 0.079 0.921 40 H 0.063 0.937 41 H 0.073 0.927 42 H 0.091 0.909 43 H 0.152 0.848 44 H 0.098 0.902 45 H 0.059 0.941 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.040 4.103 -18.964 25.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.206 6.206 3 C 0.183 3.817 4 C -0.221 4.221 5 C -0.016 4.016 6 C 0.350 3.650 7 O -0.408 6.408 8 N -0.325 5.325 9 C -0.029 4.029 10 C -0.193 4.193 11 C 0.073 3.927 12 N -0.390 5.390 13 C -0.375 4.375 14 H 0.109 0.891 15 C -0.191 4.191 16 N -0.581 5.581 17 Si 0.714 3.286 18 H -0.211 1.211 19 H -0.217 1.217 20 H -0.203 1.203 21 C -0.182 4.182 22 C -0.005 4.005 23 C -0.201 4.201 24 C 0.184 3.816 25 O -0.207 6.207 26 C -0.055 4.055 27 N -0.325 5.325 28 H 0.117 0.883 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.172 0.828 32 H 0.106 0.894 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.194 0.806 38 H 0.070 0.930 39 H 0.098 0.902 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.110 0.890 43 H 0.170 0.830 44 H 0.116 0.884 45 H 0.077 0.923 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.439 4.183 -19.234 26.298 hybrid contribution 0.461 1.182 0.699 1.449 sum -16.978 5.365 -18.535 25.702 Atomic orbital electron populations 1.22897 0.76935 1.03290 1.02399 1.86298 1.23124 1.23789 1.87425 1.19125 0.88600 0.83490 0.90437 1.21037 0.91973 0.98650 1.10480 1.19800 0.93995 0.92468 0.95331 1.18003 0.85621 0.80036 0.81368 1.90797 1.71882 1.39433 1.38686 1.48101 1.08168 1.41614 1.34611 1.22175 0.98236 0.92448 0.90046 1.22574 1.00379 1.02519 0.93799 1.20150 0.91248 0.96412 0.84842 1.42794 1.82654 1.07109 1.06433 1.19061 1.39082 0.89928 0.89379 0.89142 1.24674 1.01519 0.96822 0.96043 1.69699 1.54154 1.30631 1.03591 0.86563 0.78066 0.85983 0.77973 1.21138 1.21750 1.20296 1.22260 1.01836 1.00275 0.93850 1.21686 0.78252 1.02699 0.97885 1.20807 0.89996 1.00254 1.09072 1.19117 0.88250 0.83796 0.90392 1.86292 1.19562 1.27430 1.87426 1.22895 0.77183 1.03003 1.02447 1.66631 1.41870 0.98539 1.25477 0.88294 0.92155 0.92334 0.82819 0.89406 0.90659 0.89933 0.92285 0.92385 0.80628 0.93030 0.90211 0.91836 0.90841 0.89030 0.83034 0.88351 0.92268 0.92152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.38 101.05 1.05 1.33 16 2 O -0.30 -3.04 10.47 -18.76 -0.20 -3.24 16 3 C 0.36 4.06 7.48 -17.19 -0.13 3.93 16 4 C -0.20 -2.23 7.41 -38.84 -0.29 -2.52 16 5 C -0.01 -0.07 5.04 -104.70 -0.53 -0.60 16 6 C 0.56 7.91 7.30 -12.18 -0.09 7.82 16 7 O -0.53 -8.89 16.48 5.36 0.09 -8.80 16 8 N -0.59 -7.79 2.98 -174.02 -0.52 -8.31 16 9 C 0.09 1.16 5.37 -3.93 -0.02 1.14 16 10 C -0.15 -2.39 5.64 -26.83 -0.15 -2.55 16 11 C 0.18 3.24 2.73 -67.89 -0.19 3.05 16 12 N -0.75 -16.89 4.92 -53.39 -0.26 -17.15 16 13 C -0.24 -6.64 10.41 -15.06 -0.16 -6.79 16 14 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 15 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 16 N -0.93 -28.79 13.97 55.49 0.78 -28.01 16 17 Si 0.88 21.80 27.74 -169.99 -4.71 17.09 16 18 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 20 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 21 C -0.14 -2.12 5.55 -26.61 -0.15 -2.27 16 22 C 0.12 1.51 6.43 -3.71 -0.02 1.49 16 23 C -0.18 -2.19 9.77 -38.84 -0.38 -2.57 16 24 C 0.36 4.23 7.48 -17.18 -0.13 4.10 16 25 O -0.30 -3.17 10.47 -18.74 -0.20 -3.36 16 26 C 0.04 0.28 10.38 101.05 1.05 1.33 16 27 N -0.59 -6.57 8.02 -13.45 -0.11 -6.68 16 28 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.42 8.10 -51.93 -0.42 0.00 16 30 H 0.06 0.39 8.10 -51.93 -0.42 -0.03 16 31 H 0.15 1.50 7.05 -52.49 -0.37 1.13 16 32 H 0.09 1.01 4.52 -51.93 -0.23 0.78 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.06 1.05 8.08 -51.93 -0.42 0.64 16 37 H 0.36 8.15 5.66 -40.82 -0.23 7.92 16 38 H 0.26 7.65 8.31 -40.82 -0.34 7.32 16 39 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.09 1.21 7.02 -51.93 -0.36 0.84 16 43 H 0.15 1.77 8.06 -52.49 -0.42 1.35 16 44 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.06 0.39 8.10 -51.93 -0.42 -0.03 16 46 H 0.06 0.42 8.10 -51.93 -0.42 0.00 16 LS Contribution 376.97 15.07 5.68 5.68 Total: -1.00 -33.18 376.97 -6.38 -39.56 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -6.70 Total: 6.27 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: -0.23 Total: 6.96 kcal Atomic # 7 Polarization: -60.04 SS G_CDS: -0.11 Total: -60.16 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: -0.30 Total: -15.40 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.71 Total: 17.09 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.18 -6.38 -39.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996771620.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.116 kcal (2) G-P(sol) polarization free energy of solvation -33.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds