Wall clock time and date at job start Tue Mar 31 2020 19:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35686 * 116.99458 * 2 1 4 4 C 1.38738 * 119.57967 * 180.02562 * 3 2 1 5 5 C 1.39719 * 119.07830 * 179.97438 * 4 3 2 6 6 C 1.48179 * 120.86166 * 179.97438 * 5 4 3 7 7 O 1.21510 * 119.99866 * 130.23129 * 6 5 4 8 8 N 1.34771 * 119.99904 * 310.22403 * 6 5 4 9 9 C 1.46927 * 120.63148 * 3.51023 * 8 6 5 10 10 C 1.52764 * 109.00595 * 233.57729 * 9 8 6 11 11 C 1.53044 * 109.38463 * 305.59052 * 10 9 8 12 12 N 1.46495 * 109.44619 * 181.25165 * 11 10 9 13 13 C 1.36940 * 119.99979 * 84.94074 * 12 11 10 14 14 H 1.07994 * 119.99907 * 359.97438 * 13 12 11 15 15 C 1.38815 * 120.00249 * 179.97438 * 13 12 11 16 16 N 1.31620 * 120.00300 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 119.99629 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47597 * 90.00028 * 17 15 13 19 19 H 1.48507 * 109.46980 * 209.99774 * 17 15 13 20 20 H 1.48503 * 109.47462 * 329.99605 * 17 15 13 21 21 C 1.53038 * 109.53908 * 61.23904 * 11 10 9 22 22 C 1.46931 * 120.62868 * 183.78132 * 8 6 5 23 23 C 1.39726 * 118.27603 * 359.97438 * 5 4 3 24 24 C 1.38743 * 119.07670 * 0.06108 * 23 5 4 25 25 O 1.35680 * 119.58221 * 179.97438 * 24 23 5 26 26 C 1.42898 * 117.00031 * 179.97438 * 25 24 23 27 27 N 1.32254 * 119.58438 * 0.02562 * 3 2 1 28 28 H 1.09003 * 109.46859 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47009 * 299.99882 * 1 2 3 30 30 H 1.09002 * 109.47645 * 60.00222 * 1 2 3 31 31 H 1.08000 * 120.45946 * 359.71946 * 4 3 2 32 32 H 1.08992 * 109.58450 * 353.41219 * 9 8 6 33 33 H 1.09003 * 109.58694 * 113.84380 * 9 8 6 34 34 H 1.08995 * 109.56223 * 185.54883 * 10 9 8 35 35 H 1.09003 * 109.35888 * 65.49613 * 10 9 8 36 36 H 1.08999 * 109.45864 * 301.21825 * 11 10 9 37 37 H 0.97004 * 120.00226 * 264.93045 * 12 11 10 38 38 H 0.96998 * 119.99797 * 179.97438 * 16 15 13 39 39 H 1.09003 * 109.49555 * 178.68754 * 21 11 10 40 40 H 1.08994 * 109.52950 * 58.60183 * 21 11 10 41 41 H 1.08998 * 109.58527 * 246.15987 * 22 8 6 42 42 H 1.08997 * 109.58477 * 6.44175 * 22 8 6 43 43 H 1.07998 * 120.45987 * 180.02562 * 23 5 4 44 44 H 1.08998 * 109.47028 * 179.97438 * 26 25 24 45 45 H 1.08993 * 109.46976 * 299.99954 * 26 25 24 46 46 H 1.09002 * 109.47071 * 59.99620 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 6 3.4309 1.2716 -0.0005 5 6 4.0542 2.5221 -0.0011 6 6 5.5317 2.6349 -0.0011 7 8 6.0857 3.3586 -0.8048 8 7 6.2609 1.9351 0.8904 9 6 5.6119 0.9982 1.8175 10 6 6.0286 1.3431 3.2462 11 6 7.5560 1.3632 3.3390 12 7 7.9571 1.6644 4.7154 13 6 8.0438 0.6574 5.6393 14 1 7.8160 -0.3588 5.3534 15 6 8.4243 0.9427 6.9435 16 7 8.5071 -0.0251 7.8316 17 14 8.8175 2.7006 7.4382 18 1 7.5806 3.3688 7.9164 19 1 9.8288 2.6943 8.5257 20 1 9.3559 3.4362 6.2659 21 6 8.1119 2.4358 2.3996 22 6 7.7195 2.0991 0.9576 23 6 3.2481 3.6634 -0.0016 24 6 1.8687 3.5147 -0.0003 25 8 1.0763 4.6160 -0.0002 26 6 -0.3361 4.3990 0.0006 27 7 1.3165 2.3129 0.0005 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 4.0198 0.3663 0.0036 32 1 4.5293 1.0823 1.7237 33 1 5.9229 -0.0204 1.5851 34 1 5.6321 0.5951 3.9327 35 1 5.6352 2.3248 3.5103 36 1 7.9502 0.3886 3.0510 37 1 8.1614 2.5772 4.9723 38 1 8.7734 0.1743 8.7428 39 1 9.1983 2.4654 2.4836 40 1 7.6994 3.4074 2.6714 41 1 8.2058 1.1722 0.6535 42 1 8.0272 2.9077 0.2946 43 1 3.6927 4.6476 -0.0024 44 1 -0.8513 5.3595 0.0010 45 1 -0.6177 3.8356 -0.8890 46 1 -0.6167 3.8362 0.8909 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996771620.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:22 Heat of formation + Delta-G solvation = -67.965054 kcal Electronic energy + Delta-G solvation = -29252.447550 eV Core-core repulsion = 25143.046630 eV Total energy + Delta-G solvation = -4109.400920 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.34972 -41.13937 -39.98802 -38.94676 -38.01791 -36.32014 -34.28431 -33.61534 -32.10211 -31.60868 -31.47021 -28.93545 -27.57312 -27.00134 -25.26516 -24.73922 -24.13436 -23.51293 -21.93158 -20.93021 -19.80229 -19.25824 -19.04469 -18.03755 -17.49773 -17.22115 -17.16154 -16.87840 -16.69035 -16.55907 -16.15587 -15.88011 -15.84668 -15.10546 -15.02509 -14.83372 -14.72971 -14.40248 -14.27588 -14.08213 -13.60169 -13.53071 -13.22015 -12.98657 -12.93902 -12.69263 -12.59816 -12.56004 -12.24231 -12.06363 -12.02891 -11.78961 -11.75380 -11.53037 -11.34115 -11.08356 -11.00597 -10.76365 -9.81665 -9.37245 -9.26739 -8.00262 -5.33014 -0.37949 -0.01415 1.35321 1.39194 1.40868 1.48330 1.62122 1.98683 2.08840 2.49530 2.49783 2.96266 3.31164 3.35461 3.53607 3.74347 3.81458 3.92055 4.02006 4.13497 4.18028 4.30357 4.34834 4.38681 4.39812 4.40636 4.43890 4.55798 4.59423 4.70710 4.72868 4.76170 4.78655 4.83388 4.88879 4.92877 5.00715 5.05485 5.25066 5.43342 5.55871 5.72814 5.80444 6.17784 6.21425 6.24168 6.48811 6.85832 7.10142 7.86960 8.04696 9.21136 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013200 B = 0.002869 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.743384 B = 9756.164347 C =10151.085836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.307 6.307 3 C 0.357 3.643 4 C -0.198 4.198 5 C -0.014 4.014 6 C 0.567 3.433 7 O -0.560 6.560 8 N -0.591 5.591 9 C 0.103 3.897 10 C -0.143 4.143 11 C 0.175 3.825 12 N -0.753 5.753 13 C -0.222 4.222 14 H 0.063 0.937 15 C -0.064 4.064 16 N -0.984 5.984 17 Si 0.950 3.050 18 H -0.283 1.283 19 H -0.299 1.299 20 H -0.252 1.252 21 C -0.132 4.132 22 C 0.121 3.879 23 C -0.191 4.191 24 C 0.359 3.641 25 O -0.311 6.311 26 C 0.034 3.966 27 N -0.583 5.583 28 H 0.124 0.876 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.169 0.831 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.064 0.936 35 H 0.051 0.949 36 H 0.055 0.945 37 H 0.363 0.637 38 H 0.256 0.744 39 H 0.084 0.916 40 H 0.059 0.941 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.150 0.850 44 H 0.124 0.876 45 H 0.062 0.938 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.099 4.862 -20.528 27.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.213 6.213 3 C 0.179 3.821 4 C -0.220 4.220 5 C -0.024 4.024 6 C 0.354 3.646 7 O -0.440 6.440 8 N -0.322 5.322 9 C -0.019 4.019 10 C -0.184 4.184 11 C 0.068 3.932 12 N -0.395 5.395 13 C -0.353 4.353 14 H 0.081 0.919 15 C -0.256 4.256 16 N -0.635 5.635 17 Si 0.778 3.222 18 H -0.210 1.210 19 H -0.226 1.226 20 H -0.177 1.177 21 C -0.171 4.171 22 C -0.001 4.001 23 C -0.213 4.213 24 C 0.181 3.819 25 O -0.218 6.218 26 C -0.060 4.060 27 N -0.323 5.323 28 H 0.142 0.858 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.186 0.814 32 H 0.119 0.881 33 H 0.114 0.886 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.196 0.804 38 H 0.065 0.935 39 H 0.103 0.897 40 H 0.078 0.922 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.168 0.832 44 H 0.142 0.858 45 H 0.081 0.919 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -18.529 4.954 -20.857 28.335 hybrid contribution 0.662 0.868 1.105 1.553 sum -17.866 5.822 -19.752 27.263 Atomic orbital electron populations 1.23147 0.75304 1.05057 1.02514 1.86299 1.24767 1.23113 1.87119 1.19281 0.88832 0.83887 0.90085 1.21147 0.92236 0.98607 1.09967 1.19676 0.93081 0.93172 0.96457 1.18171 0.86190 0.79305 0.80898 1.90780 1.72600 1.40669 1.39939 1.48126 1.08289 1.41409 1.34341 1.22143 0.99027 0.93141 0.87575 1.22377 0.98575 1.01613 0.95825 1.20417 0.92514 0.97346 0.82960 1.42849 1.82873 1.06127 1.07660 1.19038 1.36428 0.89823 0.90043 0.91932 1.25437 1.02840 1.00978 0.96311 1.69870 1.56676 1.33057 1.03909 0.85486 0.77584 0.81162 0.77993 1.20952 1.22581 1.17675 1.22131 1.01985 0.98821 0.94189 1.21686 0.78274 1.03774 0.96386 1.20864 0.90488 1.00246 1.09664 1.19181 0.88322 0.84215 0.90230 1.86288 1.21117 1.27180 1.87179 1.23152 0.75525 1.04695 1.02610 1.66673 1.41831 0.98457 1.25364 0.85783 0.92234 0.91989 0.81375 0.88073 0.88643 0.91707 0.93018 0.92731 0.80420 0.93498 0.89703 0.92206 0.88932 0.88866 0.83198 0.85803 0.91891 0.92137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.38 113.37 1.18 1.58 16 2 O -0.31 -5.59 10.47 -90.05 -0.94 -6.54 16 3 C 0.36 7.41 7.48 84.75 0.63 8.04 16 4 C -0.20 -4.06 7.41 22.75 0.17 -3.89 16 5 C -0.01 -0.32 5.04 -19.92 -0.10 -0.42 16 6 C 0.57 15.08 7.30 86.89 0.63 15.72 16 7 O -0.56 -18.18 16.48 -3.75 -0.06 -18.24 16 8 N -0.59 -14.30 2.98 -822.76 -2.45 -16.75 16 9 C 0.10 2.35 5.37 86.22 0.46 2.81 16 10 C -0.14 -4.35 5.64 30.53 0.17 -4.17 16 11 C 0.18 5.97 2.73 45.02 0.12 6.10 16 12 N -0.75 -33.28 4.92 -322.82 -1.59 -34.87 16 13 C -0.22 -12.13 10.41 84.03 0.87 -11.26 16 14 H 0.06 3.71 8.06 -2.91 -0.02 3.69 16 15 C -0.06 -3.72 5.50 84.86 0.47 -3.25 16 16 N -0.98 -62.20 13.97 21.65 0.30 -61.90 16 17 Si 0.95 45.05 27.74 68.60 1.90 46.96 16 18 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 19 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 20 H -0.25 -10.78 6.52 99.48 0.65 -10.13 16 21 C -0.13 -3.66 5.55 30.67 0.17 -3.49 16 22 C 0.12 2.85 6.43 86.36 0.55 3.41 16 23 C -0.19 -4.50 9.77 22.75 0.22 -4.28 16 24 C 0.36 7.98 7.48 84.75 0.63 8.62 16 25 O -0.31 -6.19 10.47 -89.98 -0.94 -7.13 16 26 C 0.03 0.43 10.38 113.37 1.18 1.60 16 27 N -0.58 -12.24 8.02 -422.19 -3.39 -15.63 16 28 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.06 0.72 8.10 -2.39 -0.02 0.70 16 30 H 0.06 0.70 8.10 -2.39 -0.02 0.68 16 31 H 0.17 2.85 7.05 -2.91 -0.02 2.83 16 32 H 0.10 2.10 4.52 -2.39 -0.01 2.09 16 33 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.05 1.91 8.08 -2.39 -0.02 1.90 16 37 H 0.36 15.73 5.66 -92.71 -0.52 15.21 16 38 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 39 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.09 2.26 7.02 -2.39 -0.02 2.24 16 43 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 44 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.06 0.73 8.10 -2.39 -0.02 0.71 16 46 H 0.06 0.75 8.10 -2.39 -0.02 0.73 16 Total: -1.00 -71.98 376.97 0.62 -71.36 By element: Atomic # 1 Polarization: 25.21 SS G_CDS: 0.42 Total: 25.63 kcal Atomic # 6 Polarization: 9.74 SS G_CDS: 7.37 Total: 17.11 kcal Atomic # 7 Polarization: -122.02 SS G_CDS: -7.12 Total: -129.15 kcal Atomic # 8 Polarization: -29.96 SS G_CDS: -1.95 Total: -31.91 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.90 Total: 46.96 kcal Total: -71.98 0.62 -71.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996771620.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.393 kcal (2) G-P(sol) polarization free energy of solvation -71.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds