Wall clock time and date at job start Tue Mar 31 2020 18:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35686 * 116.99955 * 2 1 4 4 C 1.38743 * 119.57880 * 179.97438 * 3 2 1 5 5 C 1.39725 * 119.07397 * 179.97438 * 4 3 2 6 6 C 1.48175 * 120.86076 * 180.02562 * 5 4 3 7 7 O 1.21509 * 119.99911 * 336.81541 * 6 5 4 8 8 N 1.34777 * 119.99457 * 156.54158 * 6 5 4 9 9 C 1.46500 * 120.00246 * 355.02492 * 8 6 5 10 10 C 1.46506 * 119.99634 * 175.03159 * 8 6 5 11 11 C 1.53778 * 113.61200 * 217.49385 * 10 8 6 12 12 C 1.53775 * 87.08206 * 220.01579 * 11 10 8 13 13 N 1.46503 * 113.68978 * 139.99175 * 12 11 10 14 14 C 1.36933 * 119.99959 * 107.47270 * 13 12 11 15 15 H 1.08004 * 119.99762 * 359.97438 * 14 13 12 16 16 C 1.38808 * 120.00040 * 180.02562 * 14 13 12 17 17 N 1.31626 * 120.00091 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 120.00132 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46644 * 89.99686 * 18 16 14 20 20 H 1.48500 * 109.47141 * 209.99357 * 18 16 14 21 21 H 1.48501 * 109.47121 * 329.99884 * 18 16 14 22 22 C 1.53779 * 113.61297 * 119.99714 * 10 8 6 23 23 C 1.39731 * 118.27620 * 0.27723 * 5 4 3 24 24 C 1.38744 * 119.07348 * 359.43744 * 23 5 4 25 25 O 1.35681 * 119.58193 * 180.29958 * 24 23 5 26 26 C 1.42901 * 117.00412 * 180.27757 * 25 24 23 27 27 N 1.32255 * 120.83712 * 0.57685 * 24 23 5 28 28 H 1.09003 * 109.47397 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47047 * 299.99830 * 1 2 3 30 30 H 1.08998 * 109.47365 * 59.99506 * 1 2 3 31 31 H 1.07996 * 120.46280 * 359.97438 * 4 3 2 32 32 H 1.08998 * 109.47175 * 95.61713 * 9 8 6 33 33 H 1.09002 * 109.46636 * 215.60941 * 9 8 6 34 34 H 1.08998 * 109.47520 * 335.60838 * 9 8 6 35 35 H 1.09000 * 112.84641 * 348.80163 * 10 8 6 36 36 H 1.08998 * 113.61484 * 334.56819 * 11 10 8 37 37 H 1.08998 * 113.61224 * 105.46769 * 11 10 8 38 38 H 1.08997 * 113.62040 * 270.88613 * 12 11 10 39 39 H 0.97000 * 119.99825 * 287.46106 * 13 12 11 40 40 H 0.96997 * 119.99992 * 180.02562 * 17 16 14 41 41 H 1.09005 * 113.61136 * 254.52245 * 22 10 8 42 42 H 1.08991 * 113.61722 * 25.43331 * 22 10 8 43 43 H 1.07995 * 120.46192 * 179.72466 * 23 5 4 44 44 H 1.08996 * 109.46597 * 299.99522 * 26 25 24 45 45 H 1.08996 * 109.46718 * 59.99624 * 26 25 24 46 46 H 1.08998 * 109.47394 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 3.4310 1.2714 0.0005 5 6 4.0543 2.5219 0.0000 6 6 5.5318 2.6347 0.0000 7 8 6.2112 1.7166 0.4147 8 7 6.1221 3.7535 -0.4652 9 6 5.3107 4.8124 -1.0707 10 6 7.5753 3.9106 -0.3654 11 6 8.0188 5.3475 -0.0441 12 6 9.1657 5.1338 -1.0460 13 7 9.4398 6.3030 -1.8851 14 6 10.5693 7.0477 -1.6737 15 1 11.2578 6.7734 -0.8881 16 6 10.8288 8.1559 -2.4684 17 7 9.9894 8.4905 -3.4254 18 14 12.3693 9.1723 -2.1796 19 1 13.4806 8.6315 -3.0030 20 1 12.1104 10.5834 -2.5630 21 1 12.7416 9.1098 -0.7433 22 6 8.2710 4.0838 -1.7258 23 6 3.2483 3.6633 0.0049 24 6 1.8689 3.5146 -0.0019 25 8 1.0764 4.6159 -0.0034 26 6 -0.3360 4.3990 -0.0043 27 7 1.3166 2.3129 -0.0013 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 4.0198 0.3661 0.0014 32 1 5.0819 5.5689 -0.3202 33 1 5.8640 5.2699 -1.8909 34 1 4.3827 4.3861 -1.4517 35 1 8.0399 3.1564 0.2697 36 1 7.3014 6.1062 -0.3568 37 1 8.3562 5.4808 0.9838 38 1 10.0660 4.7150 -0.5964 39 1 8.8213 6.5495 -2.5904 40 1 10.1709 9.2647 -3.9809 41 1 8.8120 3.1969 -2.0556 42 1 7.6226 4.4970 -2.4984 43 1 3.6929 4.6475 0.0091 44 1 -0.6164 3.8353 -0.8940 45 1 -0.6177 3.8367 0.8860 46 1 -0.8512 5.3596 -0.0050 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999053929.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:33 Heat of formation + Delta-G solvation = -5.358505 kcal Electronic energy + Delta-G solvation = -28665.402439 eV Core-core repulsion = 24558.716343 eV Total energy + Delta-G solvation = -4106.686096 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.50151 -40.14267 -39.26180 -38.21425 -37.13531 -35.09978 -33.41371 -32.43859 -30.90094 -29.93750 -28.32602 -27.44912 -26.78316 -25.38061 -25.11147 -23.87516 -23.62128 -22.09030 -20.28506 -18.95932 -18.64280 -18.29175 -17.15141 -17.09645 -16.77140 -16.37218 -16.10204 -16.03757 -15.89901 -15.32679 -15.19990 -14.57337 -14.50972 -14.05842 -13.84085 -13.63225 -13.28793 -13.05610 -12.93456 -12.73982 -12.46479 -12.17328 -12.11859 -11.98371 -11.82272 -11.63595 -11.27178 -11.00740 -10.92084 -10.66608 -10.54607 -10.40047 -10.32877 -10.14982 -9.99591 -9.84574 -9.58828 -8.92048 -8.58418 -8.47725 -7.01258 -5.82100 -3.11074 0.42523 0.83514 2.45153 2.58765 2.76441 2.98539 3.41388 3.45172 3.47095 3.48324 3.79786 4.29185 4.56509 4.57305 4.72988 4.84580 4.87369 4.89170 4.92713 4.94092 5.05026 5.12114 5.13295 5.18963 5.23190 5.33716 5.40574 5.41568 5.47911 5.70628 5.74403 5.80693 5.83163 5.92737 6.11346 6.26311 6.31606 6.37342 6.44688 6.53650 6.72811 6.96159 6.98894 7.30859 7.36835 7.67116 8.01132 8.36275 9.47775 10.04043 10.38671 11.40167 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021579 B = 0.002236 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.265781 B =12519.417718 C =13461.562793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.301 6.301 3 C 0.357 3.643 4 C -0.172 4.172 5 C -0.015 4.015 6 C 0.558 3.442 7 O -0.528 6.528 8 N -0.585 5.585 9 C 0.057 3.943 10 C 0.116 3.884 11 C -0.174 4.174 12 C 0.170 3.830 13 N -0.709 5.709 14 C -0.244 4.244 15 H 0.072 0.928 16 C -0.013 4.013 17 N -0.932 5.932 18 Si 0.908 3.092 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.281 1.281 22 C -0.162 4.162 23 C -0.212 4.212 24 C 0.356 3.644 25 O -0.300 6.300 26 C 0.040 3.960 27 N -0.584 5.584 28 H 0.098 0.902 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.155 0.845 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.116 0.884 36 H 0.084 0.916 37 H 0.062 0.938 38 H 0.080 0.920 39 H 0.385 0.615 40 H 0.256 0.744 41 H 0.066 0.934 42 H 0.082 0.918 43 H 0.170 0.830 44 H 0.059 0.941 45 H 0.058 0.942 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.195 -13.005 6.732 27.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.208 6.208 3 C 0.179 3.821 4 C -0.193 4.193 5 C -0.025 4.025 6 C 0.345 3.655 7 O -0.405 6.405 8 N -0.315 5.315 9 C -0.086 4.086 10 C 0.013 3.987 11 C -0.216 4.216 12 C 0.057 3.943 13 N -0.347 5.347 14 C -0.375 4.375 15 H 0.090 0.910 16 C -0.209 4.209 17 N -0.580 5.580 18 Si 0.739 3.261 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.207 1.207 22 C -0.203 4.203 23 C -0.233 4.233 24 C 0.178 3.822 25 O -0.207 6.207 26 C -0.055 4.055 27 N -0.324 5.324 28 H 0.116 0.884 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.173 0.827 32 H 0.085 0.915 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.134 0.866 36 H 0.103 0.897 37 H 0.080 0.920 38 H 0.098 0.902 39 H 0.219 0.781 40 H 0.066 0.934 41 H 0.084 0.916 42 H 0.100 0.900 43 H 0.187 0.813 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -23.365 -13.414 6.974 27.830 hybrid contribution 0.701 0.815 -0.151 1.085 sum -22.664 -12.599 6.823 26.813 Atomic orbital electron populations 1.22887 0.77022 1.03213 1.02389 1.86295 1.23038 1.23901 1.87535 1.19141 0.88632 0.83436 0.90933 1.20913 0.91481 0.99046 1.07901 1.19904 0.93992 0.92361 0.96292 1.18033 0.86205 0.82645 0.78628 1.90782 1.64455 1.37863 1.47375 1.47757 1.08284 1.17431 1.58041 1.22471 0.96270 0.90799 0.99023 1.22720 0.77212 0.99401 0.99359 1.24340 1.01492 0.94161 1.01606 1.21335 0.93679 0.88100 0.91192 1.42350 1.26142 1.28221 1.37974 1.19308 0.99086 1.05746 1.13386 0.90976 1.24769 0.98797 0.99008 0.98295 1.69656 1.37103 1.28875 1.22397 0.86180 0.82766 0.79565 0.77612 1.21674 1.21775 1.20692 1.23935 0.99292 1.00548 0.96489 1.21874 0.90491 1.01566 1.09389 1.19203 0.88410 0.83751 0.90815 1.86296 1.19512 1.27365 1.87493 1.22888 0.77256 1.03027 1.02335 1.66615 1.41991 0.98637 1.25149 0.88357 0.92284 0.92255 0.82693 0.91492 0.89914 0.89639 0.86596 0.89730 0.91951 0.90175 0.78092 0.93443 0.91568 0.89964 0.81301 0.92266 0.92337 0.88290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.38 101.05 1.05 1.31 16 2 O -0.30 -3.03 10.47 -18.76 -0.20 -3.23 16 3 C 0.36 4.00 7.48 -17.18 -0.13 3.87 16 4 C -0.17 -2.05 9.61 -38.84 -0.37 -2.42 16 5 C -0.02 -0.19 5.53 -104.70 -0.58 -0.77 16 6 C 0.56 8.03 7.54 -12.18 -0.09 7.94 16 7 O -0.53 -9.13 16.17 5.36 0.09 -9.04 16 8 N -0.58 -7.90 3.08 -173.99 -0.54 -8.44 16 9 C 0.06 0.62 7.24 59.85 0.43 1.06 16 10 C 0.12 1.74 4.19 -67.12 -0.28 1.46 16 11 C -0.17 -2.84 7.36 -25.92 -0.19 -3.03 16 12 C 0.17 3.22 4.48 -67.12 -0.30 2.92 16 13 N -0.71 -17.07 5.40 -52.64 -0.28 -17.36 16 14 C -0.24 -6.60 9.97 -15.06 -0.15 -6.75 16 15 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 16 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 17 N -0.93 -27.46 13.06 55.49 0.72 -26.74 16 18 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 C -0.16 -2.63 7.40 -25.92 -0.19 -2.83 16 23 C -0.21 -2.29 7.57 -38.84 -0.29 -2.59 16 24 C 0.36 3.85 7.48 -17.18 -0.13 3.72 16 25 O -0.30 -2.92 10.47 -18.75 -0.20 -3.11 16 26 C 0.04 0.26 10.38 101.05 1.05 1.31 16 27 N -0.58 -6.30 8.02 -13.45 -0.11 -6.40 16 28 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.37 8.10 -51.93 -0.42 -0.05 16 30 H 0.06 0.37 8.10 -51.93 -0.42 -0.05 16 31 H 0.16 1.82 7.90 -52.49 -0.41 1.41 16 32 H 0.07 0.66 7.10 -51.93 -0.37 0.29 16 33 H 0.08 0.97 6.59 -51.93 -0.34 0.63 16 34 H 0.09 0.83 5.07 -51.93 -0.26 0.56 16 35 H 0.12 1.80 7.27 -51.93 -0.38 1.42 16 36 H 0.08 1.41 6.79 -51.93 -0.35 1.05 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.08 1.52 8.10 -51.93 -0.42 1.10 16 39 H 0.39 9.78 7.92 -40.82 -0.32 9.46 16 40 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 41 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.08 1.34 6.83 -51.93 -0.35 0.99 16 43 H 0.17 1.61 4.47 -52.49 -0.23 1.38 16 44 H 0.06 0.37 8.10 -51.93 -0.42 -0.05 16 45 H 0.06 0.37 8.10 -51.93 -0.42 -0.05 16 46 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 378.82 15.07 5.71 5.71 Total: -1.00 -32.26 378.82 -6.47 -38.73 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -6.37 Total: 8.15 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: -0.27 Total: 4.75 kcal Atomic # 7 Polarization: -58.73 SS G_CDS: -0.20 Total: -58.94 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -0.31 Total: -15.38 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.26 -6.47 -38.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999053929.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.372 kcal (2) G-P(sol) polarization free energy of solvation -32.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds