Wall clock time and date at job start Tue Mar 31 2020 18:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35686 * 116.99955 * 2 1 4 4 C 1.38743 * 119.57880 * 179.97438 * 3 2 1 5 5 C 1.39725 * 119.07397 * 179.97438 * 4 3 2 6 6 C 1.48175 * 120.86076 * 180.02562 * 5 4 3 7 7 O 1.21509 * 119.99911 * 336.81541 * 6 5 4 8 8 N 1.34777 * 119.99457 * 156.54158 * 6 5 4 9 9 C 1.46500 * 120.00246 * 355.02492 * 8 6 5 10 10 C 1.46506 * 119.99634 * 175.03159 * 8 6 5 11 11 C 1.53778 * 113.61200 * 217.49385 * 10 8 6 12 12 C 1.53775 * 87.08206 * 220.01579 * 11 10 8 13 13 N 1.46503 * 113.68978 * 139.99175 * 12 11 10 14 14 C 1.36933 * 119.99959 * 107.47270 * 13 12 11 15 15 H 1.08004 * 119.99762 * 359.97438 * 14 13 12 16 16 C 1.38808 * 120.00040 * 180.02562 * 14 13 12 17 17 N 1.31626 * 120.00091 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 120.00132 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46644 * 89.99686 * 18 16 14 20 20 H 1.48500 * 109.47141 * 209.99357 * 18 16 14 21 21 H 1.48501 * 109.47121 * 329.99884 * 18 16 14 22 22 C 1.53779 * 113.61297 * 119.99714 * 10 8 6 23 23 C 1.39731 * 118.27620 * 0.27723 * 5 4 3 24 24 C 1.38744 * 119.07348 * 359.43744 * 23 5 4 25 25 O 1.35681 * 119.58193 * 180.29958 * 24 23 5 26 26 C 1.42901 * 117.00412 * 180.27757 * 25 24 23 27 27 N 1.32255 * 120.83712 * 0.57685 * 24 23 5 28 28 H 1.09003 * 109.47397 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47047 * 299.99830 * 1 2 3 30 30 H 1.08998 * 109.47365 * 59.99506 * 1 2 3 31 31 H 1.07996 * 120.46280 * 359.97438 * 4 3 2 32 32 H 1.08998 * 109.47175 * 95.61713 * 9 8 6 33 33 H 1.09002 * 109.46636 * 215.60941 * 9 8 6 34 34 H 1.08998 * 109.47520 * 335.60838 * 9 8 6 35 35 H 1.09000 * 112.84641 * 348.80163 * 10 8 6 36 36 H 1.08998 * 113.61484 * 334.56819 * 11 10 8 37 37 H 1.08998 * 113.61224 * 105.46769 * 11 10 8 38 38 H 1.08997 * 113.62040 * 270.88613 * 12 11 10 39 39 H 0.97000 * 119.99825 * 287.46106 * 13 12 11 40 40 H 0.96997 * 119.99992 * 180.02562 * 17 16 14 41 41 H 1.09005 * 113.61136 * 254.52245 * 22 10 8 42 42 H 1.08991 * 113.61722 * 25.43331 * 22 10 8 43 43 H 1.07995 * 120.46192 * 179.72466 * 23 5 4 44 44 H 1.08996 * 109.46597 * 299.99522 * 26 25 24 45 45 H 1.08996 * 109.46718 * 59.99624 * 26 25 24 46 46 H 1.08998 * 109.47394 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 3.4310 1.2714 0.0005 5 6 4.0543 2.5219 0.0000 6 6 5.5318 2.6347 0.0000 7 8 6.2112 1.7166 0.4147 8 7 6.1221 3.7535 -0.4652 9 6 5.3107 4.8124 -1.0707 10 6 7.5753 3.9106 -0.3654 11 6 8.0188 5.3475 -0.0441 12 6 9.1657 5.1338 -1.0460 13 7 9.4398 6.3030 -1.8851 14 6 10.5693 7.0477 -1.6737 15 1 11.2578 6.7734 -0.8881 16 6 10.8288 8.1559 -2.4684 17 7 9.9894 8.4905 -3.4254 18 14 12.3693 9.1723 -2.1796 19 1 13.4806 8.6315 -3.0030 20 1 12.1104 10.5834 -2.5630 21 1 12.7416 9.1098 -0.7433 22 6 8.2710 4.0838 -1.7258 23 6 3.2483 3.6633 0.0049 24 6 1.8689 3.5146 -0.0019 25 8 1.0764 4.6159 -0.0034 26 6 -0.3360 4.3990 -0.0043 27 7 1.3166 2.3129 -0.0013 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 4.0198 0.3661 0.0014 32 1 5.0819 5.5689 -0.3202 33 1 5.8640 5.2699 -1.8909 34 1 4.3827 4.3861 -1.4517 35 1 8.0399 3.1564 0.2697 36 1 7.3014 6.1062 -0.3568 37 1 8.3562 5.4808 0.9838 38 1 10.0660 4.7150 -0.5964 39 1 8.8213 6.5495 -2.5904 40 1 10.1709 9.2647 -3.9809 41 1 8.8120 3.1969 -2.0556 42 1 7.6226 4.4970 -2.4984 43 1 3.6929 4.6475 0.0091 44 1 -0.6164 3.8353 -0.8940 45 1 -0.6177 3.8367 0.8860 46 1 -0.8512 5.3596 -0.0050 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999053929.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:32 Heat of formation + Delta-G solvation = -29.386559 kcal Electronic energy + Delta-G solvation = -28666.444374 eV Core-core repulsion = 24558.716343 eV Total energy + Delta-G solvation = -4107.728031 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.38540 -41.24663 -39.98479 -39.49844 -37.99257 -36.40497 -35.09072 -33.51271 -31.95790 -31.54667 -28.96095 -28.38325 -27.45540 -26.78790 -26.44585 -25.42939 -24.45064 -23.38164 -21.35570 -20.35311 -19.60607 -19.07965 -19.03291 -18.15494 -17.52341 -17.35331 -17.19366 -16.94761 -16.55732 -16.47653 -16.30539 -15.97772 -15.81399 -15.27718 -14.96865 -14.70557 -14.45152 -14.31133 -14.14344 -13.78624 -13.50889 -13.18822 -13.12161 -12.98180 -12.83048 -12.76424 -12.57814 -12.46403 -12.22835 -12.13490 -11.99796 -11.78406 -11.64072 -11.49824 -11.36039 -11.03414 -10.86254 -10.82359 -9.71527 -9.32148 -8.97033 -7.92814 -5.20670 -0.49720 -0.00724 1.50124 1.50857 1.54377 1.59290 1.61794 1.96060 2.08369 2.55365 2.58777 2.97870 3.38069 3.38910 3.73344 3.74012 3.79460 3.87893 3.95593 4.08897 4.22660 4.28132 4.29811 4.36295 4.40329 4.41214 4.44292 4.54736 4.57672 4.71568 4.73892 4.76763 4.79104 4.88830 4.91010 4.93147 4.98349 5.09177 5.17232 5.40149 5.52183 5.63388 5.73485 6.20853 6.24847 6.29522 6.48701 6.88828 7.36292 8.11435 8.35178 9.30133 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021579 B = 0.002236 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.265781 B =12519.417718 C =13461.562793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.312 6.312 3 C 0.355 3.645 4 C -0.182 4.182 5 C -0.022 4.022 6 C 0.559 3.441 7 O -0.562 6.562 8 N -0.583 5.583 9 C 0.053 3.947 10 C 0.131 3.869 11 C -0.159 4.159 12 C 0.153 3.847 13 N -0.722 5.722 14 C -0.242 4.242 15 H 0.077 0.923 16 C -0.075 4.075 17 N -0.967 5.967 18 Si 0.970 3.030 19 H -0.290 1.290 20 H -0.297 1.297 21 H -0.270 1.270 22 C -0.151 4.151 23 C -0.208 4.208 24 C 0.354 3.646 25 O -0.306 6.306 26 C 0.034 3.966 27 N -0.580 5.580 28 H 0.124 0.876 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.150 0.850 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.102 0.898 35 H 0.114 0.886 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.376 0.624 40 H 0.251 0.749 41 H 0.070 0.930 42 H 0.082 0.918 43 H 0.183 0.817 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.690 -13.121 7.530 28.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.218 6.218 3 C 0.177 3.823 4 C -0.204 4.204 5 C -0.032 4.032 6 C 0.347 3.653 7 O -0.442 6.442 8 N -0.312 5.312 9 C -0.089 4.089 10 C 0.027 3.973 11 C -0.201 4.201 12 C 0.042 3.958 13 N -0.359 5.359 14 C -0.374 4.374 15 H 0.095 0.905 16 C -0.267 4.267 17 N -0.618 5.618 18 Si 0.799 3.201 19 H -0.217 1.217 20 H -0.223 1.223 21 H -0.195 1.195 22 C -0.191 4.191 23 C -0.229 4.229 24 C 0.176 3.824 25 O -0.213 6.213 26 C -0.060 4.060 27 N -0.320 5.320 28 H 0.142 0.858 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.168 0.832 32 H 0.102 0.898 33 H 0.094 0.906 34 H 0.120 0.880 35 H 0.131 0.869 36 H 0.103 0.897 37 H 0.086 0.914 38 H 0.097 0.903 39 H 0.208 0.792 40 H 0.059 0.941 41 H 0.088 0.912 42 H 0.101 0.899 43 H 0.200 0.800 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -24.890 -13.559 7.806 29.399 hybrid contribution 1.027 0.765 -0.364 1.331 sum -23.863 -12.794 7.442 28.081 Atomic orbital electron populations 1.23157 0.75146 1.05085 1.02607 1.86293 1.24931 1.23338 1.87246 1.19164 0.88501 0.83980 0.90643 1.20926 0.92044 0.98864 1.08585 1.19675 0.92717 0.93114 0.97660 1.18303 0.87018 0.82127 0.77832 1.90760 1.65406 1.39056 1.48978 1.47747 1.07760 1.17904 1.57804 1.22669 0.96418 0.90526 0.99238 1.22408 0.78358 0.98355 0.98158 1.24099 1.00013 0.95021 1.00926 1.21623 0.94837 0.87367 0.91939 1.42483 1.25351 1.29475 1.38623 1.19684 0.99608 1.05508 1.12593 0.90522 1.25521 1.01775 1.00641 0.98768 1.69799 1.38912 1.29427 1.23663 0.85192 0.79421 0.77577 0.77876 1.21681 1.22339 1.19483 1.23792 0.98703 0.99573 0.97066 1.21936 0.90569 1.01533 1.08822 1.19332 0.88673 0.84070 0.90346 1.86299 1.20958 1.26868 1.87148 1.23148 0.75675 1.04695 1.02524 1.66669 1.41813 0.98567 1.24970 0.85764 0.92036 0.91989 0.83199 0.89808 0.90559 0.88023 0.86856 0.89729 0.91353 0.90298 0.79203 0.94065 0.91164 0.89924 0.80044 0.92047 0.92146 0.85797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.38 113.37 1.18 1.56 16 2 O -0.31 -5.91 10.47 -90.04 -0.94 -6.86 16 3 C 0.36 7.62 7.48 84.75 0.63 8.25 16 4 C -0.18 -4.27 9.61 22.75 0.22 -4.05 16 5 C -0.02 -0.51 5.53 -19.92 -0.11 -0.62 16 6 C 0.56 15.69 7.54 86.88 0.65 16.34 16 7 O -0.56 -19.41 16.17 -3.74 -0.06 -19.47 16 8 N -0.58 -15.04 3.08 -822.68 -2.54 -17.58 16 9 C 0.05 1.07 7.24 127.77 0.92 2.00 16 10 C 0.13 3.79 4.19 45.51 0.19 3.98 16 11 C -0.16 -5.01 7.36 31.12 0.23 -4.78 16 12 C 0.15 5.72 4.48 45.52 0.20 5.92 16 13 N -0.72 -34.77 5.40 -320.44 -1.73 -36.51 16 14 C -0.24 -13.04 9.97 84.03 0.84 -12.20 16 15 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 16 C -0.07 -4.19 5.50 84.86 0.47 -3.73 16 17 N -0.97 -57.70 13.06 21.65 0.28 -57.42 16 18 Si 0.97 45.37 29.55 68.60 2.03 47.40 16 19 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 20 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 21 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 22 C -0.15 -4.80 7.40 31.12 0.23 -4.57 16 23 C -0.21 -4.14 7.57 22.75 0.17 -3.97 16 24 C 0.35 7.01 7.48 84.75 0.63 7.65 16 25 O -0.31 -5.28 10.47 -89.99 -0.94 -6.22 16 26 C 0.03 0.36 10.38 113.37 1.18 1.54 16 27 N -0.58 -11.60 8.02 -422.18 -3.39 -14.98 16 28 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.06 0.67 8.10 -2.38 -0.02 0.65 16 30 H 0.06 0.67 8.10 -2.39 -0.02 0.65 16 31 H 0.15 3.58 7.90 -2.91 -0.02 3.56 16 32 H 0.08 1.45 7.10 -2.39 -0.02 1.44 16 33 H 0.08 1.69 6.59 -2.39 -0.02 1.68 16 34 H 0.10 1.76 5.07 -2.39 -0.01 1.75 16 35 H 0.11 3.42 7.27 -2.39 -0.02 3.41 16 36 H 0.08 2.70 6.79 -2.39 -0.02 2.68 16 37 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.08 2.96 8.10 -2.39 -0.02 2.94 16 39 H 0.38 19.29 7.92 -92.71 -0.73 18.55 16 40 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 41 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 42 H 0.08 2.64 6.83 -2.39 -0.02 2.62 16 43 H 0.18 3.05 4.47 -2.91 -0.01 3.04 16 44 H 0.06 0.64 8.10 -2.39 -0.02 0.62 16 45 H 0.06 0.64 8.10 -2.39 -0.02 0.62 16 46 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -68.69 378.82 0.64 -68.05 By element: Atomic # 1 Polarization: 29.98 SS G_CDS: 0.29 Total: 30.27 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: 7.64 Total: 13.32 kcal Atomic # 7 Polarization: -119.11 SS G_CDS: -7.37 Total: -126.49 kcal Atomic # 8 Polarization: -30.60 SS G_CDS: -1.95 Total: -32.55 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -68.69 0.64 -68.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999053929.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.667 kcal (2) G-P(sol) polarization free energy of solvation -68.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds