Wall clock time and date at job start Tue Mar 31 2020 18:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34780 * 120.00196 * 2 1 4 4 O 1.21611 * 120.00572 * 182.51578 * 3 2 1 5 5 C 1.47427 * 119.99475 * 2.50811 * 3 2 1 6 6 N 1.36061 * 126.45222 * 355.14646 * 5 3 2 7 7 C 1.29936 * 108.48080 * 179.97438 * 6 5 3 8 8 O 1.34049 * 109.23835 * 359.73501 * 7 6 5 9 9 C 1.34250 * 108.23021 * 0.43310 * 8 7 6 10 10 C 1.50707 * 126.52893 * 179.84166 * 9 8 7 11 11 H 1.08997 * 110.33548 * 162.44003 * 10 9 8 12 12 C 1.54487 * 110.36791 * 284.68845 * 10 9 8 13 13 C 1.54509 * 104.05805 * 142.92065 * 12 10 9 14 14 C 1.54480 * 104.18732 * 359.92646 * 13 12 10 15 15 O 1.44424 * 110.46325 * 40.11997 * 10 9 8 16 16 C 1.46496 * 120.00204 * 180.02562 * 2 1 3 17 17 C 1.53780 * 113.61617 * 37.49709 * 16 2 1 18 18 C 1.53790 * 87.08104 * 220.01895 * 17 16 2 19 19 N 1.46495 * 113.61423 * 270.88165 * 18 17 16 20 20 C 1.36942 * 119.99889 * 252.49790 * 19 18 17 21 21 H 1.07994 * 119.99692 * 359.97438 * 20 19 18 22 22 C 1.38809 * 119.99700 * 180.02562 * 20 19 18 23 23 N 1.31621 * 120.00259 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99860 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46988 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47065 * 120.00003 * 24 22 20 27 27 H 1.48506 * 109.46934 * 240.00084 * 24 22 20 28 28 C 1.53775 * 87.07962 * 25.43073 * 18 17 16 29 29 H 1.08997 * 109.46923 * 83.90192 * 1 2 3 30 30 H 1.08998 * 109.46919 * 203.90315 * 1 2 3 31 31 H 1.08994 * 109.47217 * 323.90038 * 1 2 3 32 32 H 1.07999 * 125.37929 * 179.97438 * 7 6 5 33 33 H 1.08994 * 110.51252 * 24.27328 * 12 10 9 34 34 H 1.08997 * 110.62303 * 261.62136 * 12 10 9 35 35 H 1.08996 * 110.51190 * 118.64808 * 13 12 10 36 36 H 1.09004 * 110.51038 * 241.21493 * 13 12 10 37 37 H 1.09004 * 110.36816 * 94.92426 * 14 13 12 38 38 H 1.08994 * 110.37234 * 217.25742 * 14 13 12 39 39 H 1.09007 * 112.85515 * 168.80384 * 16 2 1 40 40 H 1.09001 * 113.61030 * 334.56620 * 17 16 2 41 41 H 1.08999 * 113.61609 * 105.47292 * 17 16 2 42 42 H 1.08998 * 113.61220 * 139.97848 * 18 17 16 43 43 H 0.97004 * 120.00125 * 72.49666 * 19 18 17 44 44 H 0.97001 * 119.99828 * 180.02562 * 23 22 20 45 45 H 1.09000 * 113.61394 * 220.01800 * 28 18 17 46 46 H 1.09001 * 113.69555 * 89.12539 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3542 1.1678 -0.0462 5 6 1.4028 2.4433 0.0559 6 7 0.0517 2.5995 0.0179 7 6 -0.2184 3.8684 0.0904 8 8 0.9267 4.5593 0.1818 9 6 1.9468 3.6868 0.1558 10 6 3.4146 4.0204 0.2297 11 1 3.9913 3.1349 0.4968 12 6 3.9041 4.5945 -1.1184 13 6 4.9209 5.6856 -0.7147 14 6 4.9262 5.6453 0.8296 15 8 3.6445 5.0777 1.1863 16 6 2.1975 -1.2687 -0.0006 17 6 1.5375 -2.3608 -0.8587 18 6 1.9131 -3.3526 0.2549 19 7 3.2398 -3.9503 0.0855 20 6 3.3571 -5.2614 -0.2918 21 1 2.4714 -5.8550 -0.4640 22 6 4.6142 -5.8278 -0.4518 23 7 5.6936 -5.1048 -0.2403 24 14 4.7742 -7.6166 -0.9657 25 1 3.4216 -8.2052 -1.1374 26 1 5.5167 -7.6984 -2.2492 27 1 5.5114 -8.3685 0.0815 28 6 1.8955 -2.1550 1.2193 29 1 -0.3633 0.1092 -1.0218 30 1 -0.3633 -0.9395 0.4164 31 1 -0.3633 0.8303 0.6055 32 1 -1.2091 4.2983 0.0826 33 1 3.0731 5.0325 -1.6713 34 1 4.3902 3.8201 -1.7117 35 1 5.9102 5.4494 -1.1064 36 1 4.5938 6.6628 -1.0701 37 1 5.7355 5.0100 1.1897 38 1 5.0241 6.6523 1.2351 39 1 3.2626 -1.1425 -0.1956 40 1 0.4625 -2.2291 -0.9818 41 1 2.0529 -2.5467 -1.8010 42 1 1.1384 -4.0910 0.4615 43 1 4.0353 -3.4172 0.2406 44 1 6.5720 -5.5006 -0.3525 45 1 2.6999 -2.1747 1.9546 46 1 0.9190 -1.9660 1.6652 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999225995.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:37 Heat of formation + Delta-G solvation = -1.258608 kcal Electronic energy + Delta-G solvation = -29214.269338 eV Core-core repulsion = 25107.761027 eV Total energy + Delta-G solvation = -4106.508311 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.73867 -39.99076 -39.59443 -38.00245 -35.34864 -34.50390 -32.86689 -32.59683 -31.86386 -29.80531 -28.44462 -26.91822 -25.35393 -25.02227 -23.94601 -23.74051 -22.48913 -21.96982 -21.32765 -19.98074 -18.21568 -17.86063 -17.41529 -17.12841 -16.91572 -16.50201 -16.35985 -15.69304 -15.67076 -15.15785 -14.83299 -14.20963 -14.15310 -14.06055 -13.80998 -13.47599 -13.06611 -12.95135 -12.71735 -12.45021 -12.16603 -12.07565 -12.01418 -11.91493 -11.69970 -11.54451 -11.46413 -11.06214 -10.88066 -10.75556 -10.63633 -10.32084 -10.17133 -10.11429 -9.94043 -9.67301 -9.58218 -9.25038 -8.90216 -8.33362 -6.99501 -5.78026 -3.08091 0.80683 1.82481 2.24210 3.04845 3.19086 3.43355 3.47286 3.48769 3.51294 3.77811 4.16440 4.23026 4.52710 4.56672 4.57254 4.67241 4.91381 4.93768 5.14928 5.21573 5.22176 5.25087 5.35104 5.39496 5.44873 5.47613 5.49747 5.52752 5.59606 5.64985 5.67483 5.81218 5.89290 6.00441 6.13932 6.17135 6.27329 6.38397 6.47195 6.59883 6.73272 6.82149 7.02785 7.18122 7.54948 7.71041 8.18417 8.40147 9.50960 10.07599 10.41824 11.44150 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016340 B = 0.002595 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.176619 B =10785.974083 C =12106.523483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.581 5.581 3 C 0.593 3.407 4 O -0.536 6.536 5 C -0.052 4.052 6 N -0.458 5.458 7 C 0.173 3.827 8 O -0.187 6.187 9 C 0.044 3.956 10 C 0.150 3.850 11 H 0.133 0.867 12 C -0.145 4.145 13 C -0.153 4.153 14 C 0.044 3.956 15 O -0.369 6.369 16 C 0.122 3.878 17 C -0.180 4.180 18 C 0.173 3.827 19 N -0.706 5.706 20 C -0.244 4.244 21 H 0.073 0.927 22 C -0.012 4.012 23 N -0.930 5.930 24 Si 0.908 3.092 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C -0.168 4.168 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.255 0.745 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.096 0.904 39 H 0.120 0.880 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.386 0.614 44 H 0.256 0.744 45 H 0.071 0.929 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.540 24.603 0.275 26.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.311 5.311 3 C 0.380 3.620 4 O -0.414 6.414 5 C -0.172 4.172 6 N -0.188 5.188 7 C -0.055 4.055 8 O -0.072 6.072 9 C -0.013 4.013 10 C 0.093 3.907 11 H 0.151 0.849 12 C -0.183 4.183 13 C -0.191 4.191 14 C -0.032 4.032 15 O -0.288 6.288 16 C 0.020 3.980 17 C -0.222 4.222 18 C 0.060 3.940 19 N -0.344 5.344 20 C -0.375 4.375 21 H 0.091 0.909 22 C -0.208 4.208 23 N -0.577 5.577 24 Si 0.739 3.261 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.218 1.218 28 C -0.208 4.208 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.115 0.885 32 H 0.271 0.729 33 H 0.095 0.905 34 H 0.111 0.889 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.115 0.885 39 H 0.137 0.863 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.221 0.779 44 H 0.066 0.934 45 H 0.090 0.910 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.488 23.971 0.336 26.167 hybrid contribution 0.584 -0.162 -0.444 0.751 sum -9.904 23.809 -0.108 25.787 Atomic orbital electron populations 1.22123 0.78729 1.03515 1.02520 1.47765 1.07612 1.05388 1.70290 1.16824 0.86103 0.81931 0.77190 1.90771 1.12569 1.86493 1.51570 1.21580 0.89541 0.94535 1.11550 1.71003 1.13034 1.17380 1.17343 1.28229 0.91115 0.86063 1.00044 1.84400 1.15346 1.39055 1.68423 1.23319 0.89859 0.87147 1.00955 1.21903 0.84912 0.93995 0.89932 0.84943 1.22975 0.99628 0.99006 0.96680 1.22949 1.00242 0.99578 0.96312 1.23518 0.85949 0.99509 0.94266 1.89209 1.37773 1.49588 1.52224 1.22866 0.97760 0.79294 0.98035 1.24312 0.99552 0.97441 1.00933 1.20900 0.89877 0.91292 0.91963 1.42225 1.00997 1.10513 1.80678 1.19316 0.92373 0.87240 1.38552 0.90875 1.24786 0.95416 0.98299 1.02325 1.69683 0.97072 1.35581 1.55386 0.86100 0.77461 0.84699 0.77803 1.20493 1.21834 1.21830 1.23970 1.01600 0.97625 0.97579 0.92825 0.91273 0.88498 0.72896 0.90546 0.88899 0.89776 0.90389 0.91365 0.88541 0.86261 0.90823 0.90896 0.91333 0.77927 0.93434 0.91021 0.90358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.92 8.31 59.85 0.50 1.42 16 2 N -0.58 -9.06 3.08 -174.27 -0.54 -9.60 16 3 C 0.59 9.74 7.67 -12.52 -0.10 9.65 16 4 O -0.54 -10.01 14.12 5.27 0.07 -9.94 16 5 C -0.05 -0.72 6.67 -83.02 -0.55 -1.27 16 6 N -0.46 -5.22 7.85 -11.48 -0.09 -5.31 16 7 C 0.17 1.43 13.19 51.96 0.69 2.11 16 8 O -0.19 -2.01 10.73 6.48 0.07 -1.94 16 9 C 0.04 0.56 6.28 -35.07 -0.22 0.34 16 10 C 0.15 1.82 3.46 -27.10 -0.09 1.73 16 11 H 0.13 1.83 6.02 -51.93 -0.31 1.52 16 12 C -0.15 -1.39 6.62 -25.16 -0.17 -1.56 16 13 C -0.15 -1.13 7.08 -25.16 -0.18 -1.31 16 14 C 0.04 0.37 7.65 37.93 0.29 0.66 16 15 O -0.37 -4.44 11.33 -35.29 -0.40 -4.84 16 16 C 0.12 2.16 4.09 -67.12 -0.27 1.88 16 17 C -0.18 -3.18 7.27 -25.91 -0.19 -3.37 16 18 C 0.17 3.44 4.56 -67.12 -0.31 3.13 16 19 N -0.71 -17.81 5.31 -52.64 -0.28 -18.09 16 20 C -0.24 -6.76 9.97 -15.06 -0.15 -6.91 16 21 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 22 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 23 N -0.93 -28.26 13.06 55.49 0.72 -27.53 16 24 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 26 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 27 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 28 C -0.17 -2.89 7.34 -25.92 -0.19 -3.08 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.79 6.11 -51.93 -0.32 0.48 16 31 H 0.10 1.16 5.34 -51.93 -0.28 0.88 16 32 H 0.26 0.64 8.06 -52.49 -0.42 0.21 16 33 H 0.08 0.70 7.87 -51.93 -0.41 0.30 16 34 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.12 2.45 7.22 -51.92 -0.37 2.07 16 40 H 0.07 1.11 6.58 -51.93 -0.34 0.77 16 41 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 42 H 0.07 1.33 8.10 -51.93 -0.42 0.91 16 43 H 0.39 10.46 7.90 -40.82 -0.32 10.14 16 44 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 45 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 46 H 0.08 1.16 7.01 -51.93 -0.36 0.80 16 LS Contribution 373.50 15.07 5.63 5.63 Total: -1.00 -33.95 373.50 -7.36 -41.31 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -6.49 Total: 9.97 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: -1.04 Total: 2.98 kcal Atomic # 7 Polarization: -60.34 SS G_CDS: -0.18 Total: -60.53 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -0.26 Total: -16.73 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.95 -7.36 -41.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999225995.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.056 kcal (2) G-P(sol) polarization free energy of solvation -33.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds