Wall clock time and date at job start Tue Mar 31 2020 18:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34780 * 120.00196 * 2 1 4 4 O 1.21611 * 120.00572 * 182.51578 * 3 2 1 5 5 C 1.47427 * 119.99475 * 2.50811 * 3 2 1 6 6 N 1.36061 * 126.45222 * 355.14646 * 5 3 2 7 7 C 1.29936 * 108.48080 * 179.97438 * 6 5 3 8 8 O 1.34049 * 109.23835 * 359.73501 * 7 6 5 9 9 C 1.34250 * 108.23021 * 0.43310 * 8 7 6 10 10 C 1.50707 * 126.52893 * 179.84166 * 9 8 7 11 11 H 1.08997 * 110.33548 * 162.44003 * 10 9 8 12 12 C 1.54487 * 110.36791 * 284.68845 * 10 9 8 13 13 C 1.54509 * 104.05805 * 142.92065 * 12 10 9 14 14 C 1.54480 * 104.18732 * 359.92646 * 13 12 10 15 15 O 1.44424 * 110.46325 * 40.11997 * 10 9 8 16 16 C 1.46496 * 120.00204 * 180.02562 * 2 1 3 17 17 C 1.53780 * 113.61617 * 37.49709 * 16 2 1 18 18 C 1.53790 * 87.08104 * 220.01895 * 17 16 2 19 19 N 1.46495 * 113.61423 * 270.88165 * 18 17 16 20 20 C 1.36942 * 119.99889 * 252.49790 * 19 18 17 21 21 H 1.07994 * 119.99692 * 359.97438 * 20 19 18 22 22 C 1.38809 * 119.99700 * 180.02562 * 20 19 18 23 23 N 1.31621 * 120.00259 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99860 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46988 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47065 * 120.00003 * 24 22 20 27 27 H 1.48506 * 109.46934 * 240.00084 * 24 22 20 28 28 C 1.53775 * 87.07962 * 25.43073 * 18 17 16 29 29 H 1.08997 * 109.46923 * 83.90192 * 1 2 3 30 30 H 1.08998 * 109.46919 * 203.90315 * 1 2 3 31 31 H 1.08994 * 109.47217 * 323.90038 * 1 2 3 32 32 H 1.07999 * 125.37929 * 179.97438 * 7 6 5 33 33 H 1.08994 * 110.51252 * 24.27328 * 12 10 9 34 34 H 1.08997 * 110.62303 * 261.62136 * 12 10 9 35 35 H 1.08996 * 110.51190 * 118.64808 * 13 12 10 36 36 H 1.09004 * 110.51038 * 241.21493 * 13 12 10 37 37 H 1.09004 * 110.36816 * 94.92426 * 14 13 12 38 38 H 1.08994 * 110.37234 * 217.25742 * 14 13 12 39 39 H 1.09007 * 112.85515 * 168.80384 * 16 2 1 40 40 H 1.09001 * 113.61030 * 334.56620 * 17 16 2 41 41 H 1.08999 * 113.61609 * 105.47292 * 17 16 2 42 42 H 1.08998 * 113.61220 * 139.97848 * 18 17 16 43 43 H 0.97004 * 120.00125 * 72.49666 * 19 18 17 44 44 H 0.97001 * 119.99828 * 180.02562 * 23 22 20 45 45 H 1.09000 * 113.61394 * 220.01800 * 28 18 17 46 46 H 1.09001 * 113.69555 * 89.12539 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3542 1.1678 -0.0462 5 6 1.4028 2.4433 0.0559 6 7 0.0517 2.5995 0.0179 7 6 -0.2184 3.8684 0.0904 8 8 0.9267 4.5593 0.1818 9 6 1.9468 3.6868 0.1558 10 6 3.4146 4.0204 0.2297 11 1 3.9913 3.1349 0.4968 12 6 3.9041 4.5945 -1.1184 13 6 4.9209 5.6856 -0.7147 14 6 4.9262 5.6453 0.8296 15 8 3.6445 5.0777 1.1863 16 6 2.1975 -1.2687 -0.0006 17 6 1.5375 -2.3608 -0.8587 18 6 1.9131 -3.3526 0.2549 19 7 3.2398 -3.9503 0.0855 20 6 3.3571 -5.2614 -0.2918 21 1 2.4714 -5.8550 -0.4640 22 6 4.6142 -5.8278 -0.4518 23 7 5.6936 -5.1048 -0.2403 24 14 4.7742 -7.6166 -0.9657 25 1 3.4216 -8.2052 -1.1374 26 1 5.5167 -7.6984 -2.2492 27 1 5.5114 -8.3685 0.0815 28 6 1.8955 -2.1550 1.2193 29 1 -0.3633 0.1092 -1.0218 30 1 -0.3633 -0.9395 0.4164 31 1 -0.3633 0.8303 0.6055 32 1 -1.2091 4.2983 0.0826 33 1 3.0731 5.0325 -1.6713 34 1 4.3902 3.8201 -1.7117 35 1 5.9102 5.4494 -1.1064 36 1 4.5938 6.6628 -1.0701 37 1 5.7355 5.0100 1.1897 38 1 5.0241 6.6523 1.2351 39 1 3.2626 -1.1425 -0.1956 40 1 0.4625 -2.2291 -0.9818 41 1 2.0529 -2.5467 -1.8010 42 1 1.1384 -4.0910 0.4615 43 1 4.0353 -3.4172 0.2406 44 1 6.5720 -5.5006 -0.3525 45 1 2.6999 -2.1747 1.9546 46 1 0.9190 -1.9660 1.6652 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999225995.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:36 Heat of formation + Delta-G solvation = -26.366080 kcal Electronic energy + Delta-G solvation = -29215.358080 eV Core-core repulsion = 25107.761027 eV Total energy + Delta-G solvation = -4107.597053 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.58875 -41.31761 -40.39966 -39.44282 -36.49050 -35.82535 -34.64191 -33.40889 -32.65372 -31.77366 -29.29785 -28.03818 -26.79523 -26.45189 -25.52215 -24.67565 -23.78032 -22.75012 -22.23232 -21.08287 -19.72547 -19.41739 -18.77462 -18.09590 -17.93293 -17.56145 -17.30414 -16.69512 -16.61974 -16.49173 -16.33848 -15.77232 -15.42786 -14.95875 -14.93912 -14.80710 -14.36749 -14.24408 -14.08222 -13.49895 -13.42129 -13.36095 -13.22161 -12.92605 -12.85706 -12.82131 -12.51686 -12.46799 -12.36203 -12.11414 -11.86456 -11.82846 -11.67966 -11.48026 -11.33761 -11.08276 -10.95275 -10.88351 -10.18981 -9.58183 -9.04932 -7.95373 -5.25836 -0.15180 0.99464 1.40162 1.47874 1.49005 1.59237 1.90353 2.05959 2.55341 2.66233 2.97148 3.36321 3.37412 3.43657 3.57620 3.68645 3.82198 3.84770 3.85332 3.94372 4.12865 4.22541 4.24663 4.27659 4.34538 4.36237 4.48141 4.68236 4.73614 4.75917 4.79529 4.80461 4.83712 4.90280 4.93043 5.00824 5.04501 5.08406 5.20945 5.26063 5.38609 5.52911 5.61058 5.65781 6.21546 6.27266 6.42405 6.95033 7.31139 8.05992 8.28461 9.28341 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016340 B = 0.002595 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.176619 B =10785.974083 C =12106.523483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.581 5.581 3 C 0.583 3.417 4 O -0.573 6.573 5 C -0.070 4.070 6 N -0.478 5.478 7 C 0.204 3.796 8 O -0.188 6.188 9 C 0.038 3.962 10 C 0.146 3.854 11 H 0.106 0.894 12 C -0.143 4.143 13 C -0.145 4.145 14 C 0.035 3.965 15 O -0.388 6.388 16 C 0.126 3.874 17 C -0.160 4.160 18 C 0.157 3.843 19 N -0.723 5.723 20 C -0.241 4.241 21 H 0.084 0.916 22 C -0.079 4.079 23 N -0.972 5.972 24 Si 0.977 3.023 25 H -0.261 1.261 26 H -0.296 1.296 27 H -0.294 1.294 28 C -0.149 4.149 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.106 0.894 32 H 0.312 0.688 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.067 0.933 38 H 0.119 0.881 39 H 0.080 0.920 40 H 0.111 0.889 41 H 0.047 0.953 42 H 0.081 0.919 43 H 0.371 0.629 44 H 0.251 0.749 45 H 0.052 0.948 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.707 25.973 0.075 29.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.310 5.310 3 C 0.371 3.629 4 O -0.453 6.453 5 C -0.189 4.189 6 N -0.207 5.207 7 C -0.024 4.024 8 O -0.074 6.074 9 C -0.019 4.019 10 C 0.088 3.912 11 H 0.123 0.877 12 C -0.181 4.181 13 C -0.183 4.183 14 C -0.040 4.040 15 O -0.308 6.308 16 C 0.023 3.977 17 C -0.201 4.201 18 C 0.046 3.954 19 N -0.361 5.361 20 C -0.373 4.373 21 H 0.102 0.898 22 C -0.271 4.271 23 N -0.623 5.623 24 Si 0.806 3.194 25 H -0.185 1.185 26 H -0.223 1.223 27 H -0.221 1.221 28 C -0.188 4.188 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.124 0.876 32 H 0.327 0.673 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.086 0.914 38 H 0.137 0.863 39 H 0.098 0.902 40 H 0.129 0.871 41 H 0.066 0.934 42 H 0.099 0.901 43 H 0.203 0.797 44 H 0.059 0.941 45 H 0.071 0.929 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -13.743 25.340 0.135 28.827 hybrid contribution 1.443 -0.453 -0.348 1.552 sum -12.300 24.887 -0.213 27.762 Atomic orbital electron populations 1.22322 0.76350 1.04762 1.03399 1.47797 1.08886 1.04307 1.69990 1.17273 0.85970 0.83084 0.76572 1.90751 1.14311 1.87203 1.53083 1.21206 0.90830 0.93460 1.13404 1.70934 1.11361 1.19159 1.19223 1.29543 0.91981 0.85038 0.95796 1.84431 1.15621 1.38837 1.68559 1.23319 0.90501 0.87197 1.00913 1.21756 0.84838 0.93342 0.91255 0.87705 1.22963 1.00345 0.99437 0.95324 1.22959 1.00282 0.99550 0.95489 1.23781 0.84590 1.00467 0.95192 1.89174 1.39425 1.49483 1.52705 1.22476 0.96160 0.80714 0.98381 1.24123 1.01355 0.95942 0.98706 1.21183 0.87787 0.92449 0.93959 1.42424 1.02592 1.09993 1.81055 1.19756 0.92634 0.88268 1.36622 0.89801 1.25653 0.95276 1.02593 1.03587 1.69857 0.97335 1.37414 1.57645 0.85023 0.77946 0.79732 0.76742 1.18525 1.22291 1.22150 1.23840 1.02770 0.95670 0.96553 0.92038 0.89739 0.87585 0.67324 0.90008 0.89738 0.88507 0.88631 0.91424 0.86259 0.90233 0.87117 0.93429 0.90071 0.79708 0.94060 0.92925 0.86788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.63 8.31 127.77 1.06 2.69 16 2 N -0.58 -17.96 3.08 -823.52 -2.54 -20.50 16 3 C 0.58 19.75 7.67 86.66 0.66 20.42 16 4 O -0.57 -23.04 14.12 -4.07 -0.06 -23.10 16 5 C -0.07 -1.92 6.67 40.41 0.27 -1.65 16 6 N -0.48 -9.77 7.85 -305.15 -2.40 -12.17 16 7 C 0.20 2.63 13.19 130.52 1.72 4.35 16 8 O -0.19 -3.65 10.73 0.51 0.01 -3.64 16 9 C 0.04 0.97 6.28 25.19 0.16 1.13 16 10 C 0.15 3.67 3.46 30.36 0.11 3.78 16 11 H 0.11 3.19 6.02 -2.39 -0.01 3.18 16 12 C -0.14 -2.76 6.62 31.61 0.21 -2.55 16 13 C -0.15 -1.98 7.08 31.61 0.22 -1.76 16 14 C 0.04 0.57 7.65 72.49 0.55 1.12 16 15 O -0.39 -9.38 11.33 -148.93 -1.69 -11.07 16 16 C 0.13 4.52 4.09 45.52 0.19 4.70 16 17 C -0.16 -5.51 7.27 31.12 0.23 -5.29 16 18 C 0.16 6.16 4.56 45.52 0.21 6.37 16 19 N -0.72 -37.40 5.31 -320.46 -1.70 -39.10 16 20 C -0.24 -13.48 9.97 84.03 0.84 -12.64 16 21 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 22 C -0.08 -4.62 5.50 84.86 0.47 -4.15 16 23 N -0.97 -61.21 13.06 21.65 0.28 -60.93 16 24 Si 0.98 46.63 29.55 68.60 2.03 48.66 16 25 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 26 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 27 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 28 C -0.15 -5.04 7.34 31.12 0.23 -4.82 16 29 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.08 1.62 6.11 -2.39 -0.01 1.60 16 31 H 0.11 2.25 5.34 -2.39 -0.01 2.23 16 32 H 0.31 -0.24 8.06 -2.91 -0.02 -0.26 16 33 H 0.08 1.46 7.87 -2.39 -0.02 1.44 16 34 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 37 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.08 3.52 7.22 -2.38 -0.02 3.50 16 40 H 0.11 3.00 6.58 -2.39 -0.02 2.98 16 41 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.08 2.99 8.10 -2.39 -0.02 2.97 16 43 H 0.37 21.16 7.90 -92.71 -0.73 20.43 16 44 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 45 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.11 3.06 7.01 -2.39 -0.02 3.04 16 Total: -1.00 -77.92 373.50 1.34 -76.58 By element: Atomic # 1 Polarization: 33.28 SS G_CDS: 0.29 Total: 33.57 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: 7.12 Total: 11.71 kcal Atomic # 7 Polarization: -126.35 SS G_CDS: -6.35 Total: -132.70 kcal Atomic # 8 Polarization: -36.07 SS G_CDS: -1.74 Total: -37.81 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Total: -77.92 1.34 -76.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999225995.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.211 kcal (2) G-P(sol) polarization free energy of solvation -77.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds