Wall clock time and date at job start Tue Mar 31 2020 19:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35507 * 116.99631 * 2 1 4 4 C 1.39204 * 120.90279 * 359.97438 * 3 2 1 5 5 C 1.37900 * 119.39169 * 180.02562 * 4 3 2 6 6 N 1.32082 * 121.28987 * 0.02562 * 5 4 3 7 7 C 1.32184 * 121.98004 * 359.97438 * 6 5 4 8 8 O 1.35426 * 119.77969 * 179.97438 * 7 6 5 9 9 C 1.42902 * 116.99517 * 0.02562 * 8 7 6 10 10 C 1.40294 * 120.44274 * 359.72344 * 7 6 5 11 11 C 1.47226 * 120.65476 * 180.30840 * 10 7 6 12 12 O 1.21628 * 120.00025 * 270.24493 * 11 10 7 13 13 N 1.34777 * 120.00553 * 90.24087 * 11 10 7 14 14 C 1.46923 * 120.62642 * 359.72372 * 13 11 10 15 15 C 1.52759 * 109.00942 * 233.58233 * 14 13 11 16 16 C 1.53041 * 109.38513 * 305.58826 * 15 14 13 17 17 C 1.53040 * 109.53663 * 61.23506 * 16 15 14 18 18 H 1.09008 * 109.49756 * 58.58649 * 17 16 15 19 19 N 1.46497 * 109.52492 * 178.66576 * 17 16 15 20 20 C 1.36939 * 120.00020 * 204.85206 * 19 17 16 21 21 H 1.07998 * 120.00403 * 0.02562 * 20 19 17 22 22 C 1.38812 * 119.99547 * 180.02562 * 20 19 17 23 23 N 1.31619 * 120.00172 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99755 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46966 * 89.99832 * 24 22 20 26 26 H 1.48497 * 109.47119 * 209.99831 * 24 22 20 27 27 H 1.48497 * 109.47138 * 330.00235 * 24 22 20 28 28 C 1.46923 * 120.63655 * 180.02562 * 13 11 10 29 29 H 1.09000 * 109.47187 * 300.00328 * 1 2 3 30 30 H 1.09001 * 109.46558 * 60.00375 * 1 2 3 31 31 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 32 32 H 1.07998 * 120.30414 * 359.97438 * 4 3 2 33 33 H 1.07996 * 119.35924 * 179.97438 * 5 4 3 34 34 H 1.08998 * 109.47299 * 60.00216 * 9 8 7 35 35 H 1.09005 * 109.46612 * 179.97438 * 9 8 7 36 36 H 1.08996 * 109.47435 * 300.00063 * 9 8 7 37 37 H 1.09005 * 109.58817 * 353.41979 * 14 13 11 38 38 H 1.09002 * 109.58958 * 113.84470 * 14 13 11 39 39 H 1.09002 * 109.56938 * 185.55096 * 15 14 13 40 40 H 1.09004 * 109.38423 * 65.51711 * 15 14 13 41 41 H 1.08998 * 109.45821 * 301.21907 * 16 15 14 42 42 H 1.08996 * 109.46152 * 181.25589 * 16 15 14 43 43 H 0.96996 * 120.00064 * 24.86432 * 19 17 16 44 44 H 0.97011 * 119.99752 * 180.02562 * 23 22 20 45 45 H 1.09000 * 109.58535 * 246.15823 * 28 13 11 46 46 H 1.09001 * 109.58087 * 6.58303 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 6 1.3044 2.3866 -0.0005 5 6 1.9626 3.5984 -0.0011 6 7 3.2818 3.6626 -0.0016 7 6 4.0355 2.5766 -0.0011 8 8 5.3847 2.6943 -0.0022 9 6 5.9203 4.0191 -0.0032 10 6 3.4472 1.3030 0.0058 11 6 4.2822 0.0905 0.0132 12 8 4.6314 -0.4138 -1.0371 13 7 4.6597 -0.4608 1.1837 14 6 4.2509 0.1403 2.4605 15 6 5.4928 0.3838 3.3160 16 6 6.2758 -0.9234 3.4585 17 6 6.7255 -1.4038 2.0768 18 1 7.3423 -0.6370 1.6079 19 7 7.5021 -2.6381 2.2163 20 6 8.4163 -2.9840 1.2573 21 1 8.5652 -2.3467 0.3982 22 6 9.1518 -4.1538 1.3894 23 7 8.9700 -4.9308 2.4361 24 14 10.3995 -4.6254 0.0816 25 1 11.7228 -4.0479 0.4288 26 1 10.5080 -6.1047 0.0114 27 1 9.9595 -4.0983 -1.2352 28 6 5.4933 -1.6704 1.2072 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2250 2.3528 -0.0014 33 1 1.3882 4.5130 -0.0019 34 1 5.5808 4.5490 0.8868 35 1 7.0093 3.9707 -0.0036 36 1 5.5794 4.5482 -0.8931 37 1 3.7463 1.0882 2.2732 38 1 3.5770 -0.5375 2.9843 39 1 5.1930 0.7376 4.3024 40 1 6.1214 1.1340 2.8361 41 1 5.6388 -1.6801 3.9164 42 1 7.1503 -0.7562 4.0872 43 1 7.3686 -3.2105 2.9880 44 1 9.4843 -5.7482 2.5286 45 1 4.9229 -2.4992 1.6265 46 1 5.8082 -1.9168 0.1932 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999683593.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:34 Heat of formation + Delta-G solvation = -49.090431 kcal Electronic energy + Delta-G solvation = -30210.046226 eV Core-core repulsion = 26101.463771 eV Total energy + Delta-G solvation = -4108.582455 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.36854 -39.42478 -39.37144 -37.51957 -37.09831 -34.38348 -32.50069 -31.82378 -31.13048 -30.96116 -28.27436 -28.19241 -27.07576 -25.65861 -24.06464 -23.68797 -22.75054 -21.78987 -20.49867 -19.34217 -18.87395 -17.88380 -17.29409 -17.01747 -16.76692 -16.45359 -15.91041 -15.74702 -15.41173 -14.88894 -14.73714 -14.37350 -14.09200 -14.03036 -13.69002 -13.60548 -13.47503 -13.28884 -13.08367 -12.53207 -12.32681 -12.16831 -12.06302 -12.01903 -11.75685 -11.37188 -11.26765 -10.96265 -10.78322 -10.59036 -10.49438 -10.32494 -10.13885 -9.75440 -9.67436 -9.50783 -9.18374 -8.99771 -8.79445 -8.21696 -6.93047 -5.72822 -3.02040 0.68728 0.99847 2.39438 2.84852 3.18782 3.25263 3.45354 3.49790 3.54654 3.58048 4.03224 4.29926 4.54551 4.64212 4.68994 4.73946 4.76290 5.00021 5.04687 5.09643 5.13996 5.16854 5.19782 5.34535 5.37679 5.47996 5.55394 5.59332 5.63879 5.73062 5.77858 5.87455 6.01809 6.14656 6.25484 6.29653 6.44313 6.58190 6.78117 6.85319 6.91621 6.97555 7.11428 7.52233 7.77399 7.78774 8.45002 8.50880 9.57449 10.11820 10.47469 11.49576 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014872 B = 0.003334 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.237488 B = 8395.332191 C = 8822.906165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.296 6.296 3 C 0.230 3.770 4 C -0.301 4.301 5 C 0.186 3.814 6 N -0.561 5.561 7 C 0.386 3.614 8 O -0.290 6.290 9 C 0.040 3.960 10 C -0.225 4.225 11 C 0.583 3.417 12 O -0.530 6.530 13 N -0.593 5.593 14 C 0.115 3.885 15 C -0.129 4.129 16 C -0.124 4.124 17 C 0.169 3.831 18 H 0.052 0.948 19 N -0.718 5.718 20 C -0.240 4.240 21 H 0.072 0.928 22 C -0.011 4.011 23 N -0.934 5.934 24 Si 0.906 3.094 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.280 1.280 28 C 0.095 3.905 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.107 0.893 32 H 0.146 0.854 33 H 0.166 0.834 34 H 0.062 0.938 35 H 0.100 0.900 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.060 0.940 42 H 0.067 0.933 43 H 0.385 0.615 44 H 0.255 0.745 45 H 0.062 0.938 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.868 19.776 0.294 28.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.205 6.205 3 C 0.175 3.825 4 C -0.323 4.323 5 C 0.030 3.970 6 N -0.288 5.288 7 C 0.207 3.793 8 O -0.195 6.195 9 C -0.055 4.055 10 C -0.232 4.232 11 C 0.368 3.632 12 O -0.407 6.407 13 N -0.326 5.326 14 C -0.008 4.008 15 C -0.168 4.168 16 C -0.163 4.163 17 C 0.057 3.943 18 H 0.070 0.930 19 N -0.359 5.359 20 C -0.371 4.371 21 H 0.090 0.910 22 C -0.207 4.207 23 N -0.582 5.582 24 Si 0.737 3.263 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.206 1.206 28 C -0.029 4.029 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.125 0.875 32 H 0.164 0.836 33 H 0.183 0.817 34 H 0.081 0.919 35 H 0.119 0.881 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.086 0.914 43 H 0.219 0.781 44 H 0.065 0.935 45 H 0.080 0.920 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -18.819 19.803 -0.410 27.322 hybrid contribution -0.170 -0.883 -0.415 0.990 sum -18.989 18.920 -0.825 26.819 Atomic orbital electron populations 1.23236 0.77038 1.04882 1.01787 1.86126 1.22342 1.25596 1.86482 1.18858 0.89863 0.85202 0.88566 1.21956 1.01699 0.92447 1.16161 1.22249 0.88494 0.97249 0.88972 1.67440 1.07924 1.30345 1.23110 1.19364 0.84680 0.87390 0.87893 1.86319 1.15080 1.31866 1.86240 1.22966 0.98980 0.81005 1.02507 1.19005 0.91421 0.93880 1.18926 1.17433 0.79322 0.82421 0.84002 1.90799 1.55839 1.62739 1.31300 1.48127 1.51136 1.28495 1.04808 1.21507 0.96855 0.97771 0.84688 1.21802 0.96813 0.98912 0.99261 1.21809 0.99774 0.95935 0.98763 1.20487 0.90815 0.90381 0.92573 0.93001 1.42373 1.44059 1.22769 1.26662 1.19297 1.12776 1.04102 1.00902 0.91003 1.24730 1.00437 0.97494 0.98069 1.69667 1.44361 1.14800 1.29355 0.86196 0.81411 0.77387 0.81320 1.21725 1.21780 1.20572 1.22771 0.92083 0.84272 1.03816 0.91962 0.92015 0.87476 0.83593 0.81712 0.91948 0.88124 0.92028 0.91326 0.91597 0.91176 0.91493 0.92076 0.91414 0.78103 0.93544 0.92017 0.89092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.84 101.05 0.99 1.16 16 2 O -0.30 -3.62 10.03 -18.21 -0.18 -3.80 16 3 C 0.23 2.85 6.74 -38.32 -0.26 2.59 16 4 C -0.30 -2.59 9.09 -39.35 -0.36 -2.95 16 5 C 0.19 1.59 11.15 -17.57 -0.20 1.39 16 6 N -0.56 -6.50 9.20 -13.06 -0.12 -6.62 16 7 C 0.39 5.48 7.37 -16.63 -0.12 5.35 16 8 O -0.29 -4.27 9.93 -17.97 -0.18 -4.44 16 9 C 0.04 0.41 10.38 101.05 1.05 1.46 16 10 C -0.23 -3.46 3.66 -104.57 -0.38 -3.85 16 11 C 0.58 11.11 6.30 -12.61 -0.08 11.03 16 12 O -0.53 -12.34 16.52 5.25 0.09 -12.25 16 13 N -0.59 -10.50 2.98 -174.40 -0.52 -11.02 16 14 C 0.12 1.59 6.31 -3.94 -0.02 1.57 16 15 C -0.13 -1.74 6.06 -26.83 -0.16 -1.90 16 16 C -0.12 -2.07 5.36 -26.69 -0.14 -2.21 16 17 C 0.17 3.53 2.92 -67.84 -0.20 3.34 16 18 H 0.05 1.17 8.08 -51.92 -0.42 0.75 16 19 N -0.72 -18.40 5.13 -53.33 -0.27 -18.67 16 20 C -0.24 -6.87 9.93 -15.06 -0.15 -7.02 16 21 H 0.07 2.06 7.83 -52.49 -0.41 1.64 16 22 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 23 N -0.93 -28.52 13.06 55.49 0.72 -27.80 16 24 Si 0.91 23.15 29.55 -169.99 -5.02 18.12 16 25 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 26 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 27 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 28 C 0.09 1.95 6.02 -3.74 -0.02 1.93 16 29 H 0.06 0.28 7.71 -51.93 -0.40 -0.12 16 30 H 0.06 0.31 7.71 -51.93 -0.40 -0.09 16 31 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.15 0.75 6.45 -52.49 -0.34 0.41 16 33 H 0.17 0.76 8.06 -52.49 -0.42 0.34 16 34 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 35 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 37 H 0.07 0.87 6.23 -51.93 -0.32 0.55 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.39 10.29 7.80 -40.82 -0.32 9.97 16 44 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 45 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 46 H 0.09 2.17 7.00 -51.93 -0.36 1.81 16 LS Contribution 380.86 15.07 5.74 5.74 Total: -1.00 -36.56 380.86 -6.65 -43.22 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -6.76 Total: 6.07 kcal Atomic # 6 Polarization: 11.60 SS G_CDS: -0.15 Total: 11.45 kcal Atomic # 7 Polarization: -63.91 SS G_CDS: -0.19 Total: -64.10 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -0.27 Total: -20.50 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -5.02 Total: 18.12 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.56 -6.65 -43.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999683593.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.873 kcal (2) G-P(sol) polarization free energy of solvation -36.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds