Wall clock time and date at job start Tue Mar 31 2020 19:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35507 * 116.99631 * 2 1 4 4 C 1.39204 * 120.90279 * 359.97438 * 3 2 1 5 5 C 1.37900 * 119.39169 * 180.02562 * 4 3 2 6 6 N 1.32082 * 121.28987 * 0.02562 * 5 4 3 7 7 C 1.32184 * 121.98004 * 359.97438 * 6 5 4 8 8 O 1.35426 * 119.77969 * 179.97438 * 7 6 5 9 9 C 1.42902 * 116.99517 * 0.02562 * 8 7 6 10 10 C 1.40294 * 120.44274 * 359.72344 * 7 6 5 11 11 C 1.47226 * 120.65476 * 180.30840 * 10 7 6 12 12 O 1.21628 * 120.00025 * 270.24493 * 11 10 7 13 13 N 1.34777 * 120.00553 * 90.24087 * 11 10 7 14 14 C 1.46923 * 120.62642 * 359.72372 * 13 11 10 15 15 C 1.52759 * 109.00942 * 233.58233 * 14 13 11 16 16 C 1.53041 * 109.38513 * 305.58826 * 15 14 13 17 17 C 1.53040 * 109.53663 * 61.23506 * 16 15 14 18 18 H 1.09008 * 109.49756 * 58.58649 * 17 16 15 19 19 N 1.46497 * 109.52492 * 178.66576 * 17 16 15 20 20 C 1.36939 * 120.00020 * 204.85206 * 19 17 16 21 21 H 1.07998 * 120.00403 * 0.02562 * 20 19 17 22 22 C 1.38812 * 119.99547 * 180.02562 * 20 19 17 23 23 N 1.31619 * 120.00172 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99755 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46966 * 89.99832 * 24 22 20 26 26 H 1.48497 * 109.47119 * 209.99831 * 24 22 20 27 27 H 1.48497 * 109.47138 * 330.00235 * 24 22 20 28 28 C 1.46923 * 120.63655 * 180.02562 * 13 11 10 29 29 H 1.09000 * 109.47187 * 300.00328 * 1 2 3 30 30 H 1.09001 * 109.46558 * 60.00375 * 1 2 3 31 31 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 32 32 H 1.07998 * 120.30414 * 359.97438 * 4 3 2 33 33 H 1.07996 * 119.35924 * 179.97438 * 5 4 3 34 34 H 1.08998 * 109.47299 * 60.00216 * 9 8 7 35 35 H 1.09005 * 109.46612 * 179.97438 * 9 8 7 36 36 H 1.08996 * 109.47435 * 300.00063 * 9 8 7 37 37 H 1.09005 * 109.58817 * 353.41979 * 14 13 11 38 38 H 1.09002 * 109.58958 * 113.84470 * 14 13 11 39 39 H 1.09002 * 109.56938 * 185.55096 * 15 14 13 40 40 H 1.09004 * 109.38423 * 65.51711 * 15 14 13 41 41 H 1.08998 * 109.45821 * 301.21907 * 16 15 14 42 42 H 1.08996 * 109.46152 * 181.25589 * 16 15 14 43 43 H 0.96996 * 120.00064 * 24.86432 * 19 17 16 44 44 H 0.97011 * 119.99752 * 180.02562 * 23 22 20 45 45 H 1.09000 * 109.58535 * 246.15823 * 28 13 11 46 46 H 1.09001 * 109.58087 * 6.58303 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 6 1.3044 2.3866 -0.0005 5 6 1.9626 3.5984 -0.0011 6 7 3.2818 3.6626 -0.0016 7 6 4.0355 2.5766 -0.0011 8 8 5.3847 2.6943 -0.0022 9 6 5.9203 4.0191 -0.0032 10 6 3.4472 1.3030 0.0058 11 6 4.2822 0.0905 0.0132 12 8 4.6314 -0.4138 -1.0371 13 7 4.6597 -0.4608 1.1837 14 6 4.2509 0.1403 2.4605 15 6 5.4928 0.3838 3.3160 16 6 6.2758 -0.9234 3.4585 17 6 6.7255 -1.4038 2.0768 18 1 7.3423 -0.6370 1.6079 19 7 7.5021 -2.6381 2.2163 20 6 8.4163 -2.9840 1.2573 21 1 8.5652 -2.3467 0.3982 22 6 9.1518 -4.1538 1.3894 23 7 8.9700 -4.9308 2.4361 24 14 10.3995 -4.6254 0.0816 25 1 11.7228 -4.0479 0.4288 26 1 10.5080 -6.1047 0.0114 27 1 9.9595 -4.0983 -1.2352 28 6 5.4933 -1.6704 1.2072 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2250 2.3528 -0.0014 33 1 1.3882 4.5130 -0.0019 34 1 5.5808 4.5490 0.8868 35 1 7.0093 3.9707 -0.0036 36 1 5.5794 4.5482 -0.8931 37 1 3.7463 1.0882 2.2732 38 1 3.5770 -0.5375 2.9843 39 1 5.1930 0.7376 4.3024 40 1 6.1214 1.1340 2.8361 41 1 5.6388 -1.6801 3.9164 42 1 7.1503 -0.7562 4.0872 43 1 7.3686 -3.2105 2.9880 44 1 9.4843 -5.7482 2.5286 45 1 4.9229 -2.4992 1.6265 46 1 5.8082 -1.9168 0.1932 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999683593.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:33 Heat of formation + Delta-G solvation = -78.042021 kcal Electronic energy + Delta-G solvation = -30211.301661 eV Core-core repulsion = 26101.463771 eV Total energy + Delta-G solvation = -4109.837890 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.31400 -40.74694 -40.25380 -38.66257 -38.35904 -36.23714 -34.07095 -32.94080 -32.79731 -31.82373 -30.00791 -28.89229 -27.83608 -26.93299 -25.90562 -24.93518 -23.56281 -23.30355 -21.95715 -20.58013 -19.88620 -19.16205 -18.72796 -18.54060 -17.68210 -17.45959 -17.05829 -16.69162 -16.65197 -16.14710 -16.03244 -15.64740 -15.49026 -15.46515 -15.11602 -14.92871 -14.68169 -14.29151 -14.12585 -13.97827 -13.78944 -13.64462 -13.13531 -12.90890 -12.80746 -12.61750 -12.55970 -12.43618 -12.23894 -12.16701 -12.05703 -11.94283 -11.72113 -11.40832 -11.38258 -11.10568 -10.70273 -10.04166 -9.79717 -9.68872 -9.03587 -7.99635 -5.28981 -0.15632 0.16960 1.42765 1.44203 1.46026 1.54174 1.62644 1.94184 2.43169 2.52640 2.57997 3.22797 3.33025 3.45580 3.69597 3.73248 3.90766 3.96566 4.02352 4.09194 4.19849 4.29325 4.31435 4.34335 4.37781 4.38551 4.42989 4.52659 4.57043 4.69494 4.71537 4.76462 4.83090 4.84482 4.89428 5.01514 5.07179 5.14048 5.34508 5.41416 5.41690 5.54396 6.07499 6.12278 6.23053 6.36671 6.72186 7.06759 7.29861 8.00563 8.27882 9.22960 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014872 B = 0.003334 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.237488 B = 8395.332191 C = 8822.906165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.330 6.330 3 C 0.225 3.775 4 C -0.283 4.283 5 C 0.194 3.806 6 N -0.564 5.564 7 C 0.376 3.624 8 O -0.324 6.324 9 C 0.038 3.962 10 C -0.262 4.262 11 C 0.580 3.420 12 O -0.592 6.592 13 N -0.592 5.592 14 C 0.113 3.887 15 C -0.118 4.118 16 C -0.115 4.115 17 C 0.170 3.830 18 H 0.029 0.971 19 N -0.727 5.727 20 C -0.248 4.248 21 H 0.062 0.938 22 C -0.065 4.065 23 N -0.962 5.962 24 Si 0.968 3.032 25 H -0.282 1.282 26 H -0.289 1.289 27 H -0.279 1.279 28 C 0.109 3.891 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.113 0.887 32 H 0.189 0.811 33 H 0.214 0.786 34 H 0.076 0.924 35 H 0.110 0.890 36 H 0.065 0.935 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.113 0.887 40 H 0.059 0.941 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.379 0.621 44 H 0.254 0.746 45 H 0.061 0.939 46 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.668 22.515 1.367 31.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.240 6.240 3 C 0.170 3.830 4 C -0.303 4.303 5 C 0.040 3.960 6 N -0.292 5.292 7 C 0.197 3.803 8 O -0.231 6.231 9 C -0.056 4.056 10 C -0.269 4.269 11 C 0.368 3.632 12 O -0.473 6.473 13 N -0.323 5.323 14 C -0.009 4.009 15 C -0.157 4.157 16 C -0.153 4.153 17 C 0.060 3.940 18 H 0.047 0.953 19 N -0.367 5.367 20 C -0.379 4.379 21 H 0.080 0.920 22 C -0.258 4.258 23 N -0.612 5.612 24 Si 0.797 3.203 25 H -0.208 1.208 26 H -0.215 1.215 27 H -0.205 1.205 28 C -0.016 4.016 29 H 0.107 0.893 30 H 0.097 0.903 31 H 0.132 0.868 32 H 0.206 0.794 33 H 0.231 0.769 34 H 0.094 0.906 35 H 0.128 0.872 36 H 0.084 0.916 37 H 0.106 0.894 38 H 0.103 0.897 39 H 0.131 0.869 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.212 0.788 44 H 0.063 0.937 45 H 0.080 0.920 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -21.663 22.601 0.696 31.314 hybrid contribution 0.545 -1.652 -0.768 1.901 sum -21.118 20.949 -0.072 29.746 Atomic orbital electron populations 1.23606 0.74257 1.06193 1.03887 1.86092 1.25326 1.26235 1.86358 1.19064 0.88975 0.86596 0.88359 1.22373 1.03484 0.90678 1.13790 1.23150 0.87587 0.99139 0.86158 1.67565 1.09317 1.28876 1.23449 1.19410 0.84705 0.87604 0.88565 1.86269 1.16079 1.34206 1.86500 1.23158 0.99505 0.79636 1.03345 1.18870 0.92507 0.92327 1.23214 1.18125 0.78802 0.83136 0.83153 1.90742 1.58291 1.64859 1.33409 1.48178 1.50173 1.27450 1.06474 1.21790 0.97449 0.98880 0.82735 1.21773 0.95907 0.96636 1.01355 1.21709 1.00377 0.97877 0.95332 1.20599 0.89974 0.88029 0.95413 0.95293 1.42471 1.44363 1.24094 1.25801 1.19505 1.13231 1.04071 1.01124 0.91982 1.25465 1.02514 0.97593 1.00212 1.69792 1.45438 1.15117 1.30891 0.85230 0.79306 0.76945 0.78845 1.20827 1.21484 1.20493 1.22254 0.92559 0.85917 1.00913 0.89296 0.90278 0.86845 0.79389 0.76915 0.90583 0.87195 0.91580 0.89419 0.89712 0.86907 0.92261 0.91132 0.91505 0.78849 0.93742 0.92034 0.93588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.84 113.37 1.12 1.25 16 2 O -0.33 -7.66 10.03 -88.09 -0.88 -8.54 16 3 C 0.23 5.18 6.74 23.09 0.16 5.33 16 4 C -0.28 -3.64 9.09 22.42 0.20 -3.44 16 5 C 0.19 2.43 11.15 84.57 0.94 3.38 16 6 N -0.56 -11.61 9.20 -308.27 -2.84 -14.45 16 7 C 0.38 10.46 7.37 85.14 0.63 11.09 16 8 O -0.32 -9.75 9.93 -87.22 -0.87 -10.61 16 9 C 0.04 0.75 10.38 113.37 1.18 1.92 16 10 C -0.26 -8.05 3.66 -19.83 -0.07 -8.12 16 11 C 0.58 23.26 6.30 86.61 0.55 23.81 16 12 O -0.59 -29.86 16.52 -4.12 -0.07 -29.93 16 13 N -0.59 -21.68 2.98 -823.93 -2.45 -24.13 16 14 C 0.11 2.96 6.31 86.22 0.54 3.51 16 15 C -0.12 -2.95 6.06 30.53 0.19 -2.77 16 16 C -0.11 -3.76 5.36 30.62 0.16 -3.59 16 17 C 0.17 7.43 2.92 45.05 0.13 7.57 16 18 H 0.03 1.39 8.08 -2.38 -0.02 1.37 16 19 N -0.73 -38.84 5.13 -322.64 -1.65 -40.50 16 20 C -0.25 -14.78 9.93 84.03 0.83 -13.94 16 21 H 0.06 3.75 7.83 -2.91 -0.02 3.72 16 22 C -0.06 -3.90 5.50 84.86 0.47 -3.43 16 23 N -0.96 -60.08 13.06 21.65 0.28 -59.80 16 24 Si 0.97 48.79 29.55 68.60 2.03 50.82 16 25 H -0.28 -13.73 7.11 99.48 0.71 -13.03 16 26 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 27 H -0.28 -13.90 7.11 99.48 0.71 -13.20 16 28 C 0.11 4.77 6.02 86.35 0.52 5.29 16 29 H 0.09 0.42 7.71 -2.39 -0.02 0.40 16 30 H 0.08 0.52 7.71 -2.39 -0.02 0.50 16 31 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.19 0.76 6.45 -2.91 -0.02 0.75 16 33 H 0.21 0.56 8.06 -2.91 -0.02 0.54 16 34 H 0.08 1.26 8.10 -2.39 -0.02 1.24 16 35 H 0.11 1.87 8.14 -2.38 -0.02 1.85 16 36 H 0.07 1.21 8.10 -2.39 -0.02 1.19 16 37 H 0.09 2.04 6.23 -2.38 -0.01 2.03 16 38 H 0.08 1.93 8.14 -2.39 -0.02 1.92 16 39 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 41 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 43 H 0.38 20.94 7.80 -92.71 -0.72 20.22 16 44 H 0.25 15.26 8.31 -92.70 -0.77 14.49 16 45 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 46 H 0.05 2.40 7.00 -2.39 -0.02 2.39 16 Total: -1.00 -86.44 380.86 1.37 -85.07 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: 0.28 Total: 24.24 kcal Atomic # 6 Polarization: 20.30 SS G_CDS: 7.54 Total: 27.84 kcal Atomic # 7 Polarization: -132.21 SS G_CDS: -6.66 Total: -138.87 kcal Atomic # 8 Polarization: -47.27 SS G_CDS: -1.82 Total: -49.09 kcal Atomic # 14 Polarization: 48.79 SS G_CDS: 2.03 Total: 50.82 kcal Total: -86.44 1.37 -85.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999683593.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.027 kcal (2) G-P(sol) polarization free energy of solvation -86.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds