Wall clock time and date at job start Tue Mar 31 2020 18:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35502 * 116.99725 * 2 1 4 4 C 1.39215 * 120.90208 * 359.97438 * 3 2 1 5 5 C 1.37905 * 119.38845 * 180.02562 * 4 3 2 6 6 N 1.32082 * 121.29029 * 359.97438 * 5 4 3 7 7 C 1.32186 * 121.97954 * 359.76585 * 6 5 4 8 8 O 1.35423 * 119.77465 * 180.24921 * 7 6 5 9 9 C 1.40287 * 120.44455 * 0.50205 * 7 6 5 10 10 C 1.47226 * 120.65459 * 179.77162 * 9 7 6 11 11 O 1.21626 * 120.00145 * 269.71806 * 10 9 7 12 12 N 1.34779 * 120.00176 * 89.71491 * 10 9 7 13 13 C 1.46498 * 120.00025 * 0.02562 * 12 10 9 14 14 C 1.46500 * 120.00149 * 180.02562 * 12 10 9 15 15 C 1.53042 * 109.45810 * 240.00348 * 14 12 10 16 16 C 1.53198 * 109.31086 * 178.61534 * 15 14 12 17 17 N 1.46926 * 108.89429 * 54.55921 * 16 15 14 18 18 C 1.36937 * 120.62571 * 126.46041 * 17 16 15 19 19 H 1.07997 * 120.00221 * 332.73438 * 18 17 16 20 20 C 1.38818 * 119.99512 * 152.73441 * 18 17 16 21 21 N 1.31619 * 119.99922 * 159.41180 * 20 18 17 22 22 Si 1.86800 * 120.00017 * 339.41150 * 20 18 17 23 23 H 1.48500 * 109.47149 * 92.90848 * 22 20 18 24 24 H 1.48502 * 109.46858 * 212.90584 * 22 20 18 25 25 H 1.48494 * 109.47186 * 332.90612 * 22 20 18 26 26 C 1.46952 * 118.71485 * 306.64327 * 17 16 15 27 27 C 1.53034 * 109.46260 * 119.93492 * 14 12 10 28 28 H 1.09007 * 109.46837 * 60.00583 * 1 2 3 29 29 H 1.09002 * 109.47197 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47831 * 300.00620 * 1 2 3 31 31 H 1.07996 * 120.30377 * 0.03812 * 4 3 2 32 32 H 1.07995 * 119.35460 * 179.97438 * 5 4 3 33 33 H 0.96702 * 114.00169 * 270.24661 * 8 7 6 34 34 H 1.08994 * 109.46991 * 270.00146 * 13 12 10 35 35 H 1.09006 * 109.46774 * 30.00270 * 13 12 10 36 36 H 1.08998 * 109.47199 * 149.99635 * 13 12 10 37 37 H 1.09001 * 109.46248 * 359.97222 * 14 12 10 38 38 H 1.08993 * 109.49979 * 58.66457 * 15 14 12 39 39 H 1.08993 * 109.49864 * 298.56313 * 15 14 12 40 40 H 1.09004 * 109.58728 * 174.42371 * 16 15 14 41 41 H 1.09000 * 109.58513 * 294.70045 * 16 15 14 42 42 H 0.96996 * 120.00085 * 179.97438 * 21 20 18 43 43 H 1.08999 * 109.46884 * 293.57037 * 26 17 16 44 44 H 1.09007 * 109.71303 * 173.28716 * 26 17 16 45 45 H 1.09004 * 109.49724 * 301.33190 * 27 14 12 46 46 H 1.08996 * 109.49993 * 61.42953 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2074 0.0000 4 6 1.3043 2.3867 -0.0005 5 6 1.9626 3.5985 -0.0011 6 7 3.2818 3.6625 -0.0006 7 6 4.0355 2.5766 0.0051 8 8 5.3846 2.6942 0.0104 9 6 3.4471 1.3030 0.0001 10 6 4.2821 0.0904 0.0013 11 8 4.6272 -0.4114 -1.0515 12 7 4.6642 -0.4636 1.1690 13 6 4.2482 0.1405 2.4372 14 6 5.4955 -1.6699 1.1702 15 6 4.7556 -2.7983 1.8922 16 6 5.6130 -4.0675 1.8613 17 7 6.9373 -3.7607 2.4189 18 6 7.4535 -4.5093 3.4427 19 1 6.7909 -5.0109 4.1323 20 6 8.8287 -4.6233 3.5941 21 7 9.3358 -4.9765 4.7562 22 14 9.9596 -4.2754 2.1486 23 1 10.3855 -2.8532 2.1843 24 1 11.1550 -5.1524 2.2331 25 1 9.2373 -4.5441 0.8792 26 6 7.6949 -2.6328 1.8593 27 6 6.8142 -1.3797 1.8903 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3635 0.5139 0.8899 31 1 0.2249 2.3528 -0.0003 32 1 1.3881 4.5130 -0.0019 33 1 5.7798 2.7302 -0.8714 34 1 4.9912 0.8734 2.7514 35 1 3.2846 0.6330 2.3062 36 1 4.1591 -0.6356 3.1974 37 1 5.7015 -1.9700 0.1427 38 1 3.8058 -2.9886 1.3926 39 1 4.5714 -2.5089 2.9268 40 1 5.1363 -4.8451 2.4581 41 1 5.7203 -4.4109 0.8324 42 1 10.2967 -5.0565 4.8619 43 1 7.9742 -2.8577 0.8300 44 1 8.5933 -2.4627 2.4528 45 1 7.3297 -0.5603 1.3893 46 1 6.6107 -1.1035 2.9249 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001006299396.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:30 Heat of formation + Delta-G solvation = -33.256329 kcal Electronic energy + Delta-G solvation = -30229.280332 eV Core-core repulsion = 26121.384495 eV Total energy + Delta-G solvation = -4107.895837 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.46317 -39.65682 -39.14420 -37.59014 -37.07473 -35.21453 -32.77829 -31.96254 -30.98197 -30.39946 -30.12279 -27.99286 -26.93233 -25.60991 -24.26947 -23.22258 -22.80290 -21.95582 -20.17090 -19.48559 -19.01984 -17.98542 -17.77029 -17.15363 -16.84557 -16.49818 -16.18889 -15.65557 -15.28151 -15.08038 -14.85453 -14.70315 -14.16552 -13.85128 -13.69766 -13.55995 -13.16012 -13.03944 -12.94024 -12.79278 -12.32664 -12.29261 -12.16540 -12.03652 -11.93468 -11.89426 -11.75316 -10.89350 -10.80516 -10.50330 -10.38398 -10.16436 -10.05543 -9.82020 -9.59999 -9.44719 -9.44329 -9.28788 -8.62441 -8.43262 -6.97245 -5.93330 -3.29088 0.39287 0.76876 2.46634 2.51931 2.96739 3.09488 3.35518 3.45781 3.51858 3.55920 4.06735 4.33645 4.44639 4.51997 4.55687 4.64726 4.65294 4.94832 4.97846 5.00947 5.13773 5.17339 5.25136 5.30565 5.40833 5.43229 5.57670 5.70390 5.74868 5.79925 5.84957 6.07451 6.08822 6.22893 6.34883 6.45267 6.61976 6.62311 6.65106 6.70010 6.76008 6.92734 7.10043 7.43932 7.49659 7.97548 8.16074 8.34171 8.95331 9.73806 10.11651 11.22615 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020284 B = 0.003191 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.088743 B = 8773.930196 C = 9458.927371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.298 6.298 3 C 0.213 3.787 4 C -0.275 4.275 5 C 0.171 3.829 6 N -0.523 5.523 7 C 0.382 3.618 8 O -0.470 6.470 9 C -0.221 4.221 10 C 0.581 3.419 11 O -0.536 6.536 12 N -0.591 5.591 13 C 0.081 3.919 14 C 0.146 3.854 15 C -0.140 4.140 16 C 0.152 3.848 17 N -0.606 5.606 18 C -0.259 4.259 19 H 0.086 0.914 20 C 0.024 3.976 21 N -0.909 5.909 22 Si 0.881 3.119 23 H -0.288 1.288 24 H -0.303 1.303 25 H -0.270 1.270 26 C 0.129 3.871 27 C -0.138 4.138 28 H 0.062 0.938 29 H 0.108 0.892 30 H 0.062 0.938 31 H 0.149 0.851 32 H 0.168 0.832 33 H 0.410 0.590 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.080 0.920 37 H 0.097 0.903 38 H 0.058 0.942 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.025 0.975 42 H 0.262 0.738 43 H 0.027 0.973 44 H 0.076 0.924 45 H 0.057 0.943 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.254 17.044 -9.574 28.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.207 6.207 3 C 0.158 3.842 4 C -0.296 4.296 5 C 0.015 3.985 6 N -0.245 5.245 7 C 0.203 3.797 8 O -0.279 6.279 9 C -0.229 4.229 10 C 0.367 3.633 11 O -0.413 6.413 12 N -0.322 5.322 13 C -0.062 4.062 14 C 0.044 3.956 15 C -0.180 4.180 16 C 0.025 3.975 17 N -0.330 5.330 18 C -0.388 4.388 19 H 0.103 0.897 20 C -0.175 4.175 21 N -0.552 5.552 22 Si 0.712 3.288 23 H -0.216 1.216 24 H -0.231 1.231 25 H -0.194 1.194 26 C 0.003 3.997 27 C -0.179 4.179 28 H 0.080 0.920 29 H 0.126 0.874 30 H 0.081 0.919 31 H 0.167 0.833 32 H 0.185 0.815 33 H 0.270 0.730 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.115 0.885 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.043 0.957 42 H 0.072 0.928 43 H 0.045 0.955 44 H 0.094 0.906 45 H 0.076 0.924 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -19.447 17.212 -9.412 27.623 hybrid contribution 0.112 -0.311 -1.068 1.118 sum -19.335 16.901 -10.480 27.736 Atomic orbital electron populations 1.23255 0.76922 1.05049 1.01835 1.86132 1.22482 1.25569 1.86536 1.19083 0.90242 0.85323 0.89507 1.22170 1.01955 0.92570 1.12948 1.22413 0.88649 0.97305 0.90140 1.67320 1.07274 1.32115 1.17829 1.18792 0.84846 0.85374 0.90683 1.84689 1.13620 1.95053 1.34496 1.20356 0.91858 0.95755 1.14930 1.17516 0.79274 0.82443 0.84061 1.90797 1.56527 1.62970 1.31037 1.47963 1.50762 1.27955 1.05492 1.21708 0.99393 0.98927 0.86159 1.21180 0.89883 0.82899 1.01637 1.22376 0.98528 0.96694 1.00385 1.20876 0.85926 0.93800 0.96866 1.44395 1.16617 1.31412 1.40571 1.18912 0.90945 1.26163 1.02732 0.89670 1.25270 0.96774 0.98815 0.96668 1.69835 1.12110 1.51178 1.22070 0.86972 0.80365 0.76571 0.84931 1.21575 1.23149 1.19445 1.21326 0.94827 0.86409 0.97149 1.22369 0.95490 0.99387 1.00618 0.91973 0.87351 0.91893 0.83344 0.81486 0.72998 0.92284 0.92300 0.90175 0.88532 0.92360 0.91584 0.91506 0.95709 0.92776 0.95509 0.90625 0.92385 0.91377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.84 101.05 0.99 1.12 16 2 O -0.30 -3.18 10.03 -18.20 -0.18 -3.36 16 3 C 0.21 2.30 6.32 -38.32 -0.24 2.06 16 4 C -0.28 -2.04 9.09 -39.34 -0.36 -2.40 16 5 C 0.17 1.33 11.15 -17.57 -0.20 1.13 16 6 N -0.52 -5.77 10.37 -13.06 -0.14 -5.91 16 7 C 0.38 4.70 7.77 -16.63 -0.13 4.57 16 8 O -0.47 -5.60 13.01 -17.96 -0.23 -5.84 16 9 C -0.22 -2.90 3.94 -104.57 -0.41 -3.31 16 10 C 0.58 9.33 6.28 -12.61 -0.08 9.26 16 11 O -0.54 -10.34 16.43 5.25 0.09 -10.26 16 12 N -0.59 -9.12 2.76 -175.23 -0.48 -9.61 16 13 C 0.08 1.04 9.35 59.85 0.56 1.60 16 14 C 0.15 2.55 2.48 -67.89 -0.17 2.38 16 15 C -0.14 -2.38 5.31 -26.61 -0.14 -2.52 16 16 C 0.15 3.04 6.51 -3.71 -0.02 3.01 16 17 N -0.61 -14.53 2.78 -172.29 -0.48 -15.01 16 18 C -0.26 -7.26 10.04 -15.06 -0.15 -7.41 16 19 H 0.09 2.53 8.05 -52.49 -0.42 2.10 16 20 C 0.02 0.69 5.23 -17.43 -0.09 0.60 16 21 N -0.91 -27.99 13.97 55.49 0.78 -27.21 16 22 Si 0.88 22.73 24.35 -169.99 -4.14 18.59 16 23 H -0.29 -7.18 6.62 56.52 0.37 -6.80 16 24 H -0.30 -7.94 7.11 56.52 0.40 -7.54 16 25 H -0.27 -6.88 6.63 56.52 0.37 -6.50 16 26 C 0.13 2.89 4.20 -3.70 -0.02 2.88 16 27 C -0.14 -2.59 5.34 -26.61 -0.14 -2.73 16 28 H 0.06 0.24 7.71 -51.93 -0.40 -0.16 16 29 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.23 7.71 -51.93 -0.40 -0.17 16 31 H 0.15 0.59 6.45 -52.49 -0.34 0.26 16 32 H 0.17 0.67 8.06 -52.49 -0.42 0.25 16 33 H 0.41 3.23 9.06 45.56 0.41 3.64 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.67 6.55 -51.93 -0.34 0.33 16 36 H 0.08 1.00 6.45 -51.93 -0.34 0.67 16 37 H 0.10 1.87 6.90 -51.93 -0.36 1.51 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.07 1.12 6.72 -51.93 -0.35 0.77 16 40 H 0.07 1.31 7.93 -51.93 -0.41 0.90 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.26 7.68 8.31 -40.82 -0.34 7.35 16 43 H 0.03 0.61 7.07 -51.93 -0.37 0.24 16 44 H 0.08 1.84 4.50 -51.92 -0.23 1.61 16 45 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.07 1.27 7.72 -51.93 -0.40 0.87 16 LS Contribution 366.82 15.07 5.53 5.53 Total: -1.00 -36.47 366.82 -5.53 -42.00 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -5.67 Total: 0.85 kcal Atomic # 6 Polarization: 10.83 SS G_CDS: -0.60 Total: 10.23 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: -0.32 Total: -57.74 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -0.33 Total: -19.45 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -4.14 Total: 18.59 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -36.47 -5.53 -42.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006299396.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.741 kcal (2) G-P(sol) polarization free energy of solvation -36.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds