Wall clock time and date at job start Tue Mar 31 2020 18:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35502 * 116.99725 * 2 1 4 4 C 1.39215 * 120.90208 * 359.97438 * 3 2 1 5 5 C 1.37905 * 119.38845 * 180.02562 * 4 3 2 6 6 N 1.32082 * 121.29029 * 359.97438 * 5 4 3 7 7 C 1.32186 * 121.97954 * 359.76585 * 6 5 4 8 8 O 1.35423 * 119.77465 * 180.24921 * 7 6 5 9 9 C 1.40287 * 120.44455 * 0.50205 * 7 6 5 10 10 C 1.47226 * 120.65459 * 179.77162 * 9 7 6 11 11 O 1.21626 * 120.00145 * 269.71806 * 10 9 7 12 12 N 1.34779 * 120.00176 * 89.71491 * 10 9 7 13 13 C 1.46498 * 120.00025 * 0.02562 * 12 10 9 14 14 C 1.46500 * 120.00149 * 180.02562 * 12 10 9 15 15 C 1.53042 * 109.45810 * 240.00348 * 14 12 10 16 16 C 1.53198 * 109.31086 * 178.61534 * 15 14 12 17 17 N 1.46926 * 108.89429 * 54.55921 * 16 15 14 18 18 C 1.36937 * 120.62571 * 126.46041 * 17 16 15 19 19 H 1.07997 * 120.00221 * 332.73438 * 18 17 16 20 20 C 1.38818 * 119.99512 * 152.73441 * 18 17 16 21 21 N 1.31619 * 119.99922 * 159.41180 * 20 18 17 22 22 Si 1.86800 * 120.00017 * 339.41150 * 20 18 17 23 23 H 1.48500 * 109.47149 * 92.90848 * 22 20 18 24 24 H 1.48502 * 109.46858 * 212.90584 * 22 20 18 25 25 H 1.48494 * 109.47186 * 332.90612 * 22 20 18 26 26 C 1.46952 * 118.71485 * 306.64327 * 17 16 15 27 27 C 1.53034 * 109.46260 * 119.93492 * 14 12 10 28 28 H 1.09007 * 109.46837 * 60.00583 * 1 2 3 29 29 H 1.09002 * 109.47197 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47831 * 300.00620 * 1 2 3 31 31 H 1.07996 * 120.30377 * 0.03812 * 4 3 2 32 32 H 1.07995 * 119.35460 * 179.97438 * 5 4 3 33 33 H 0.96702 * 114.00169 * 270.24661 * 8 7 6 34 34 H 1.08994 * 109.46991 * 270.00146 * 13 12 10 35 35 H 1.09006 * 109.46774 * 30.00270 * 13 12 10 36 36 H 1.08998 * 109.47199 * 149.99635 * 13 12 10 37 37 H 1.09001 * 109.46248 * 359.97222 * 14 12 10 38 38 H 1.08993 * 109.49979 * 58.66457 * 15 14 12 39 39 H 1.08993 * 109.49864 * 298.56313 * 15 14 12 40 40 H 1.09004 * 109.58728 * 174.42371 * 16 15 14 41 41 H 1.09000 * 109.58513 * 294.70045 * 16 15 14 42 42 H 0.96996 * 120.00085 * 179.97438 * 21 20 18 43 43 H 1.08999 * 109.46884 * 293.57037 * 26 17 16 44 44 H 1.09007 * 109.71303 * 173.28716 * 26 17 16 45 45 H 1.09004 * 109.49724 * 301.33190 * 27 14 12 46 46 H 1.08996 * 109.49993 * 61.42953 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2074 0.0000 4 6 1.3043 2.3867 -0.0005 5 6 1.9626 3.5985 -0.0011 6 7 3.2818 3.6625 -0.0006 7 6 4.0355 2.5766 0.0051 8 8 5.3846 2.6942 0.0104 9 6 3.4471 1.3030 0.0001 10 6 4.2821 0.0904 0.0013 11 8 4.6272 -0.4114 -1.0515 12 7 4.6642 -0.4636 1.1690 13 6 4.2482 0.1405 2.4372 14 6 5.4955 -1.6699 1.1702 15 6 4.7556 -2.7983 1.8922 16 6 5.6130 -4.0675 1.8613 17 7 6.9373 -3.7607 2.4189 18 6 7.4535 -4.5093 3.4427 19 1 6.7909 -5.0109 4.1323 20 6 8.8287 -4.6233 3.5941 21 7 9.3358 -4.9765 4.7562 22 14 9.9596 -4.2754 2.1486 23 1 10.3855 -2.8532 2.1843 24 1 11.1550 -5.1524 2.2331 25 1 9.2373 -4.5441 0.8792 26 6 7.6949 -2.6328 1.8593 27 6 6.8142 -1.3797 1.8903 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3635 0.5139 0.8899 31 1 0.2249 2.3528 -0.0003 32 1 1.3881 4.5130 -0.0019 33 1 5.7798 2.7302 -0.8714 34 1 4.9912 0.8734 2.7514 35 1 3.2846 0.6330 2.3062 36 1 4.1591 -0.6356 3.1974 37 1 5.7015 -1.9700 0.1427 38 1 3.8058 -2.9886 1.3926 39 1 4.5714 -2.5089 2.9268 40 1 5.1363 -4.8451 2.4581 41 1 5.7203 -4.4109 0.8324 42 1 10.2967 -5.0565 4.8619 43 1 7.9742 -2.8577 0.8300 44 1 8.5933 -2.4627 2.4528 45 1 7.3297 -0.5603 1.3893 46 1 6.6107 -1.1035 2.9249 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001006299396.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:29 Heat of formation + Delta-G solvation = -63.563073 kcal Electronic energy + Delta-G solvation = -30230.594531 eV Core-core repulsion = 26121.384495 eV Total energy + Delta-G solvation = -4109.210036 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.28592 -40.82996 -39.87938 -39.12562 -37.84595 -36.69520 -34.46415 -33.16330 -32.07163 -32.00277 -31.40237 -28.46749 -28.10272 -27.10505 -25.51659 -24.46242 -23.91407 -23.54875 -21.47989 -20.54348 -20.17017 -18.92324 -18.71551 -18.58390 -18.04355 -17.77886 -17.14930 -16.83146 -16.39291 -16.07531 -15.97110 -15.75567 -15.59237 -15.36982 -15.05755 -14.70763 -14.57369 -14.33931 -14.12303 -14.01123 -13.82045 -13.62404 -13.45863 -13.31823 -12.94071 -12.65956 -12.55141 -12.53470 -12.46846 -12.23833 -12.05551 -11.80555 -11.51758 -11.43648 -11.32930 -10.76666 -10.56550 -10.14533 -10.04874 -9.73232 -8.99248 -8.17767 -5.49691 -0.32810 0.05844 1.28660 1.35252 1.40364 1.49081 1.84731 1.86987 2.39883 2.40250 2.72494 3.02853 3.25037 3.31120 3.64292 3.75166 3.77856 3.88445 3.93027 4.09673 4.17371 4.26132 4.29382 4.31735 4.36843 4.41724 4.45152 4.50054 4.58812 4.64773 4.73549 4.77179 4.81174 4.83861 4.88362 5.00392 5.02319 5.11202 5.22978 5.36290 5.44123 5.85304 6.04228 6.11705 6.25733 6.38850 6.78423 6.88364 6.95992 7.59480 8.00975 9.01879 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020284 B = 0.003191 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.088743 B = 8773.930196 C = 9458.927371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.327 6.327 3 C 0.207 3.793 4 C -0.258 4.258 5 C 0.176 3.824 6 N -0.542 5.542 7 C 0.374 3.626 8 O -0.487 6.487 9 C -0.249 4.249 10 C 0.583 3.417 11 O -0.578 6.578 12 N -0.590 5.590 13 C 0.083 3.917 14 C 0.153 3.847 15 C -0.124 4.124 16 C 0.148 3.852 17 N -0.618 5.618 18 C -0.246 4.246 19 H 0.059 0.941 20 C -0.030 4.030 21 N -0.954 5.954 22 Si 0.939 3.061 23 H -0.276 1.276 24 H -0.309 1.309 25 H -0.266 1.266 26 C 0.126 3.874 27 C -0.126 4.126 28 H 0.079 0.921 29 H 0.115 0.885 30 H 0.084 0.916 31 H 0.189 0.811 32 H 0.210 0.790 33 H 0.421 0.579 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.030 0.970 42 H 0.262 0.738 43 H 0.028 0.972 44 H 0.056 0.944 45 H 0.068 0.932 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.137 19.401 -10.568 31.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.237 6.237 3 C 0.152 3.848 4 C -0.278 4.278 5 C 0.021 3.979 6 N -0.265 5.265 7 C 0.195 3.805 8 O -0.298 6.298 9 C -0.257 4.257 10 C 0.371 3.629 11 O -0.459 6.459 12 N -0.320 5.320 13 C -0.059 4.059 14 C 0.050 3.950 15 C -0.164 4.164 16 C 0.022 3.978 17 N -0.343 5.343 18 C -0.375 4.375 19 H 0.077 0.923 20 C -0.225 4.225 21 N -0.600 5.600 22 Si 0.768 3.232 23 H -0.202 1.202 24 H -0.238 1.238 25 H -0.190 1.190 26 C 0.000 4.000 27 C -0.166 4.166 28 H 0.098 0.902 29 H 0.133 0.867 30 H 0.103 0.897 31 H 0.206 0.794 32 H 0.226 0.774 33 H 0.283 0.717 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.048 0.952 42 H 0.071 0.929 43 H 0.046 0.954 44 H 0.074 0.926 45 H 0.087 0.913 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -22.380 19.607 -10.426 31.528 hybrid contribution 0.813 -1.017 -0.764 1.510 sum -21.567 18.589 -11.190 30.593 Atomic orbital electron populations 1.23601 0.74410 1.06306 1.03733 1.86097 1.25174 1.25994 1.86438 1.19269 0.89603 0.86556 0.89387 1.22554 1.03685 0.90928 1.10630 1.23196 0.87744 0.99147 0.87840 1.67407 1.08863 1.31481 1.18747 1.18849 0.84892 0.85540 0.91230 1.84632 1.14202 1.95118 1.35810 1.20196 0.92810 0.94414 1.18301 1.17976 0.78770 0.82907 0.83277 1.90758 1.58190 1.64488 1.32440 1.47927 1.50241 1.27287 1.06546 1.21810 1.00249 0.98986 0.84884 1.20889 0.89768 0.84086 1.00270 1.22186 0.98465 0.94926 1.00833 1.21038 0.84463 0.95501 0.96779 1.44511 1.17945 1.31690 1.40138 1.18880 0.90634 1.25240 1.02771 0.92308 1.25823 0.98272 0.99893 0.98530 1.69944 1.12320 1.53893 1.23852 0.86034 0.78313 0.76878 0.81980 1.20233 1.23778 1.19033 1.21313 0.94803 0.87468 0.96399 1.22183 0.95668 0.97706 1.01024 0.90197 0.86659 0.89727 0.79360 0.77374 0.71669 0.92186 0.90660 0.89782 0.90376 0.90492 0.91170 0.91412 0.95159 0.92906 0.95418 0.92630 0.91348 0.91292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.84 113.37 1.12 1.21 16 2 O -0.33 -6.22 10.03 -88.04 -0.88 -7.10 16 3 C 0.21 3.94 6.32 23.09 0.15 4.09 16 4 C -0.26 -2.74 9.09 22.43 0.20 -2.53 16 5 C 0.18 2.02 11.15 84.58 0.94 2.97 16 6 N -0.54 -10.71 10.37 -308.28 -3.20 -13.90 16 7 C 0.37 8.77 7.77 85.14 0.66 9.43 16 8 O -0.49 -11.49 13.01 -87.18 -1.13 -12.62 16 9 C -0.25 -6.23 3.94 -19.83 -0.08 -6.31 16 10 C 0.58 18.46 6.28 86.60 0.54 19.00 16 11 O -0.58 -22.58 16.43 -4.11 -0.07 -22.65 16 12 N -0.59 -17.65 2.76 -826.56 -2.28 -19.93 16 13 C 0.08 1.99 9.35 127.77 1.19 3.19 16 14 C 0.15 5.21 2.48 45.02 0.11 5.32 16 15 C -0.12 -4.07 5.31 30.67 0.16 -3.91 16 16 C 0.15 5.80 6.51 86.36 0.56 6.36 16 17 N -0.62 -29.59 2.78 -699.00 -1.94 -31.53 16 18 C -0.25 -13.98 10.04 84.03 0.84 -13.14 16 19 H 0.06 3.60 8.05 -2.91 -0.02 3.58 16 20 C -0.03 -1.78 5.23 84.86 0.44 -1.34 16 21 N -0.95 -60.23 13.97 21.65 0.30 -59.92 16 22 Si 0.94 47.68 24.35 68.60 1.67 49.35 16 23 H -0.28 -13.30 6.62 99.48 0.66 -12.64 16 24 H -0.31 -15.87 7.11 99.48 0.71 -15.16 16 25 H -0.27 -13.16 6.63 99.48 0.66 -12.50 16 26 C 0.13 5.58 4.20 86.36 0.36 5.94 16 27 C -0.13 -4.60 5.34 30.67 0.16 -4.44 16 28 H 0.08 0.31 7.71 -2.38 -0.02 0.29 16 29 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.08 0.26 7.71 -2.39 -0.02 0.24 16 31 H 0.19 0.40 6.45 -2.91 -0.02 0.38 16 32 H 0.21 0.54 8.06 -2.91 -0.02 0.52 16 33 H 0.42 6.78 9.06 -74.06 -0.67 6.11 16 34 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.07 1.57 6.55 -2.38 -0.02 1.56 16 36 H 0.08 1.94 6.45 -2.39 -0.02 1.93 16 37 H 0.08 3.00 6.90 -2.39 -0.02 2.99 16 38 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.07 2.26 6.72 -2.39 -0.02 2.24 16 40 H 0.07 2.62 7.93 -2.38 -0.02 2.61 16 41 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 43 H 0.03 1.23 7.07 -2.39 -0.02 1.22 16 44 H 0.06 2.69 4.50 -2.38 -0.01 2.68 16 45 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 46 H 0.07 2.51 7.72 -2.39 -0.02 2.49 16 Total: -1.00 -81.26 366.82 0.10 -81.16 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: 0.26 Total: 11.29 kcal Atomic # 6 Polarization: 18.47 SS G_CDS: 7.38 Total: 25.85 kcal Atomic # 7 Polarization: -118.17 SS G_CDS: -7.12 Total: -125.28 kcal Atomic # 8 Polarization: -40.28 SS G_CDS: -2.09 Total: -42.37 kcal Atomic # 14 Polarization: 47.68 SS G_CDS: 1.67 Total: 49.35 kcal Total: -81.26 0.10 -81.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006299396.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.597 kcal (2) G-P(sol) polarization free energy of solvation -81.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds