Wall clock time and date at job start Tue Mar 31 2020 19:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35682 * 117.00148 * 2 1 4 4 C 1.38739 * 119.58238 * 179.97438 * 3 2 1 5 5 C 1.39723 * 119.07474 * 180.02562 * 4 3 2 6 6 C 1.48179 * 120.86030 * 179.97438 * 5 4 3 7 7 O 1.21512 * 120.00030 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00038 * 179.97438 * 6 5 4 9 9 C 1.46501 * 120.00022 * 179.97438 * 8 6 5 10 10 H 1.09007 * 109.49353 * 35.06755 * 9 8 6 11 11 C 1.53039 * 109.49714 * 155.15970 * 9 8 6 12 12 C 1.53037 * 109.53825 * 181.31814 * 11 9 8 13 13 C 1.53194 * 109.31546 * 298.63656 * 12 11 9 14 14 N 1.46926 * 108.77264 * 54.63474 * 13 12 11 15 15 C 1.36941 * 120.63170 * 126.41601 * 14 13 12 16 16 H 1.08001 * 119.99840 * 207.67501 * 15 14 13 17 17 C 1.38808 * 119.99743 * 27.67008 * 15 14 13 18 18 N 1.31615 * 119.99919 * 17.36296 * 17 15 14 19 19 Si 1.86803 * 119.99890 * 197.35495 * 17 15 14 20 20 H 1.48502 * 109.46880 * 60.00728 * 19 17 15 21 21 H 1.48501 * 109.47157 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47242 * 300.00464 * 19 17 15 23 23 C 1.46930 * 118.73909 * 306.39072 * 14 13 12 24 24 C 1.39719 * 118.27992 * 0.25178 * 5 4 3 25 25 C 1.38741 * 119.07324 * 359.50489 * 24 5 4 26 26 O 1.35685 * 119.58150 * 180.27515 * 25 24 5 27 27 C 1.42905 * 116.99941 * 180.23401 * 26 25 24 28 28 N 1.32254 * 120.83847 * 0.50982 * 25 24 5 29 29 H 1.09003 * 109.47485 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47240 * 299.99597 * 1 2 3 31 31 H 1.09001 * 109.47269 * 59.99736 * 1 2 3 32 32 H 1.07994 * 120.46134 * 0.04565 * 4 3 2 33 33 H 0.96995 * 119.99845 * 359.97438 * 8 6 5 34 34 H 1.09002 * 109.45842 * 301.33985 * 11 9 8 35 35 H 1.09000 * 109.45699 * 61.31368 * 11 9 8 36 36 H 1.09001 * 109.49949 * 178.68578 * 12 11 9 37 37 H 1.09007 * 109.49796 * 58.58800 * 12 11 9 38 38 H 1.08996 * 109.58426 * 294.84952 * 13 12 11 39 39 H 1.08998 * 109.58505 * 174.41995 * 13 12 11 40 40 H 0.97007 * 119.99487 * 179.97438 * 18 17 15 41 41 H 1.08999 * 109.58472 * 173.39269 * 23 14 13 42 42 H 1.08997 * 109.58585 * 293.68093 * 23 14 13 43 43 H 1.07998 * 120.46529 * 179.74918 * 24 5 4 44 44 H 1.08999 * 109.46981 * 299.99406 * 27 26 25 45 45 H 1.08999 * 109.47168 * 60.00104 * 27 26 25 46 46 H 1.08997 * 109.46911 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4310 1.2714 0.0005 5 6 4.0543 2.5219 0.0011 6 6 5.5318 2.6347 0.0022 7 8 6.2177 1.6317 0.0032 8 7 6.1149 3.8498 0.0022 9 6 7.5756 3.9614 0.0039 10 1 8.0031 3.1501 -0.5855 11 6 7.9860 5.3052 -0.6024 12 6 9.5126 5.4089 -0.6312 13 6 10.0523 5.3396 0.8008 14 7 9.5423 4.1188 1.4397 15 6 10.4012 3.2248 2.0215 16 1 10.1330 2.1805 2.0836 17 6 11.6164 3.6609 2.5311 18 7 11.8080 4.9406 2.7716 19 14 12.9798 2.4313 2.8759 20 1 13.3480 1.7347 1.6172 21 1 14.1663 3.1454 3.4123 22 1 12.5088 1.4365 3.8729 23 6 8.0933 3.8756 1.4431 24 6 3.2484 3.6632 0.0065 25 6 1.8690 3.5146 0.0006 26 8 1.0766 4.6160 0.0000 27 6 -0.3359 4.3990 -0.0010 28 7 1.3166 2.3129 0.0001 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 4.0198 0.3661 0.0002 33 1 5.5673 4.6505 0.0011 34 1 7.5977 5.3790 -1.6183 35 1 7.5785 6.1158 0.0019 36 1 9.8044 6.3563 -1.0845 37 1 9.9223 4.5844 -1.2147 38 1 9.7164 6.2126 1.3604 39 1 11.1417 5.3133 0.7798 40 1 12.6572 5.2453 3.1281 41 1 7.8903 2.8833 1.8459 42 1 7.5980 4.6277 2.0573 43 1 3.6930 4.6474 0.0111 44 1 -0.6164 3.8361 -0.8912 45 1 -0.6176 3.8359 0.8888 46 1 -0.8510 5.3596 -0.0008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007791979.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:15 Heat of formation + Delta-G solvation = -44.560610 kcal Electronic energy + Delta-G solvation = -28832.580973 eV Core-core repulsion = 24724.194946 eV Total energy + Delta-G solvation = -4108.386027 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.33986 -39.70264 -39.23101 -37.60213 -36.96942 -34.44221 -32.98797 -32.23220 -30.81109 -30.45691 -28.85229 -28.12461 -26.89013 -25.27735 -24.52914 -23.60544 -22.16781 -21.90380 -20.55492 -19.67488 -18.77916 -18.24223 -16.85587 -16.83606 -16.72773 -16.42171 -15.88791 -15.87325 -15.43119 -15.16407 -14.90022 -14.69410 -14.03705 -14.02454 -13.79959 -13.55657 -13.34872 -13.09392 -12.68547 -12.45231 -12.39097 -12.36906 -11.95868 -11.95389 -11.83089 -11.11848 -10.99953 -10.89589 -10.77068 -10.48020 -10.26626 -10.23823 -10.11193 -10.04490 -9.89640 -9.65006 -9.61437 -8.88650 -8.51927 -8.39335 -6.66443 -5.76687 -3.18696 0.46486 0.88047 2.51240 2.73190 2.82653 3.21068 3.43168 3.47563 3.50811 3.59375 3.88584 4.50626 4.56604 4.67688 4.78563 4.87039 4.90277 4.91346 4.94656 4.99913 5.20491 5.24036 5.28590 5.38490 5.47906 5.54274 5.61792 5.69985 5.76427 5.91446 6.06559 6.12683 6.23446 6.46654 6.50734 6.59921 6.63065 6.68529 6.83051 6.96838 6.99476 7.33911 7.36666 7.60973 7.65766 7.84965 8.25639 8.47722 9.23876 9.86077 10.41480 11.32088 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018292 B = 0.002491 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.334674 B =11237.748752 C =12205.774989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.300 6.300 3 C 0.358 3.642 4 C -0.170 4.170 5 C -0.012 4.012 6 C 0.556 3.444 7 O -0.516 6.516 8 N -0.710 5.710 9 C 0.125 3.875 10 H 0.090 0.910 11 C -0.115 4.115 12 C -0.139 4.139 13 C 0.167 3.833 14 N -0.587 5.587 15 C -0.251 4.251 16 H 0.067 0.933 17 C 0.002 3.998 18 N -0.904 5.904 19 Si 0.904 3.096 20 H -0.283 1.283 21 H -0.291 1.291 22 H -0.282 1.282 23 C 0.142 3.858 24 C -0.198 4.198 25 C 0.357 3.643 26 O -0.302 6.302 27 C 0.040 3.960 28 N -0.584 5.584 29 H 0.098 0.902 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.159 0.841 33 H 0.397 0.603 34 H 0.052 0.948 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.058 0.942 38 H 0.019 0.981 39 H 0.090 0.910 40 H 0.254 0.746 41 H 0.059 0.941 42 H 0.019 0.981 43 H 0.149 0.851 44 H 0.058 0.942 45 H 0.059 0.941 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.982 -0.594 -8.303 26.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.206 6.206 3 C 0.180 3.820 4 C -0.191 4.191 5 C -0.023 4.023 6 C 0.340 3.660 7 O -0.392 6.392 8 N -0.361 5.361 9 C 0.020 3.980 10 H 0.108 0.892 11 C -0.153 4.153 12 C -0.179 4.179 13 C 0.041 3.959 14 N -0.310 5.310 15 C -0.381 4.381 16 H 0.085 0.915 17 C -0.196 4.196 18 N -0.549 5.549 19 Si 0.733 3.267 20 H -0.210 1.210 21 H -0.217 1.217 22 H -0.208 1.208 23 C 0.014 3.986 24 C -0.220 4.220 25 C 0.180 3.820 26 O -0.208 6.208 27 C -0.055 4.055 28 N -0.324 5.324 29 H 0.116 0.884 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.176 0.824 33 H 0.231 0.769 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.037 0.963 39 H 0.108 0.892 40 H 0.064 0.936 41 H 0.077 0.923 42 H 0.037 0.963 43 H 0.167 0.833 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -25.021 -1.296 -8.208 26.365 hybrid contribution 0.610 -0.064 0.243 0.659 sum -24.411 -1.360 -7.965 25.714 Atomic orbital electron populations 1.22886 0.77064 1.03221 1.02343 1.86306 1.22998 1.23863 1.87473 1.19167 0.88677 0.83403 0.90768 1.20978 0.91418 0.99406 1.07341 1.20018 0.94107 0.92287 0.95840 1.17908 0.86077 0.84271 0.77722 1.90835 1.63903 1.36014 1.48456 1.46071 1.08901 1.07263 1.73820 1.21858 0.76607 0.98767 1.00774 0.89238 1.21687 0.98258 0.96023 0.99372 1.22183 0.93493 1.00488 1.01759 1.20857 1.00346 0.87756 0.86957 1.43996 0.99381 1.23468 1.64139 1.19188 0.97902 0.89189 1.31803 0.91543 1.25018 0.99929 0.96036 0.98611 1.70032 1.24324 1.13445 1.47070 0.86347 0.81573 0.80579 0.78175 1.20952 1.21661 1.20844 1.21185 0.86399 0.99365 0.91676 1.21023 0.90483 1.00133 1.10316 1.19127 0.88315 0.83788 0.90818 1.86289 1.19502 1.27452 1.87597 1.22880 0.77289 1.02953 1.02375 1.66620 1.41935 0.98585 1.25306 0.88356 0.92262 0.92312 0.82358 0.76869 0.92946 0.92107 0.92632 0.92358 0.96255 0.89210 0.93609 0.92293 0.96337 0.83296 0.92311 0.92274 0.88371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.38 101.05 1.05 1.33 16 2 O -0.30 -3.21 10.47 -18.75 -0.20 -3.41 16 3 C 0.36 4.23 7.48 -17.18 -0.13 4.10 16 4 C -0.17 -2.17 9.60 -38.84 -0.37 -2.54 16 5 C -0.01 -0.16 5.90 -104.71 -0.62 -0.77 16 6 C 0.56 8.62 7.76 -12.18 -0.09 8.53 16 7 O -0.52 -10.07 16.10 5.36 0.09 -9.98 16 8 N -0.71 -10.08 5.04 -54.53 -0.27 -10.36 16 9 C 0.12 2.20 2.60 -67.81 -0.18 2.02 16 10 H 0.09 1.80 7.58 -51.92 -0.39 1.40 16 11 C -0.12 -1.81 5.35 -26.69 -0.14 -1.95 16 12 C -0.14 -2.55 6.08 -26.61 -0.16 -2.72 16 13 C 0.17 3.90 5.31 -3.71 -0.02 3.88 16 14 N -0.59 -14.87 2.99 -172.32 -0.52 -15.39 16 15 C -0.25 -7.07 9.59 -15.06 -0.14 -7.21 16 16 H 0.07 1.88 7.89 -52.49 -0.41 1.47 16 17 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 18 N -0.90 -26.29 11.19 55.49 0.62 -25.67 16 19 Si 0.90 22.13 29.59 -169.99 -5.03 17.10 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 C 0.14 3.06 6.09 -3.71 -0.02 3.04 16 24 C -0.20 -2.15 9.54 -38.84 -0.37 -2.52 16 25 C 0.36 3.93 7.48 -17.18 -0.13 3.81 16 26 O -0.30 -2.93 10.47 -18.76 -0.20 -3.13 16 27 C 0.04 0.26 10.38 101.05 1.05 1.31 16 28 N -0.58 -6.51 8.02 -13.45 -0.11 -6.62 16 29 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.40 8.10 -51.93 -0.42 -0.02 16 31 H 0.06 0.39 8.10 -51.93 -0.42 -0.03 16 32 H 0.16 2.06 7.74 -52.49 -0.41 1.65 16 33 H 0.40 4.34 6.74 -40.82 -0.28 4.06 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.09 2.36 6.04 -51.93 -0.31 2.05 16 40 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 41 H 0.06 1.37 7.93 -51.93 -0.41 0.96 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.15 1.29 6.53 -52.49 -0.34 0.95 16 44 H 0.06 0.37 8.10 -51.93 -0.42 -0.05 16 45 H 0.06 0.38 8.10 -51.93 -0.42 -0.04 16 46 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 379.95 15.07 5.73 5.73 Total: -1.00 -32.94 379.95 -7.01 -39.95 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -6.76 Total: 1.51 kcal Atomic # 6 Polarization: 10.64 SS G_CDS: -0.37 Total: 10.27 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: -0.28 Total: -58.04 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -0.31 Total: -16.52 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.03 Total: 17.10 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.94 -7.01 -39.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007791979.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.607 kcal (2) G-P(sol) polarization free energy of solvation -32.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds