Wall clock time and date at job start Tue Mar 31 2020 18:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 O 1.20917 * 124.56616 * 2 1 4 4 C 1.34172 * 112.18965 * 180.19524 * 3 2 1 5 5 C 1.48212 * 126.38089 * 179.78125 * 4 3 2 6 6 O 1.21500 * 119.99233 * 172.84983 * 5 4 3 7 7 N 1.34766 * 120.00419 * 352.85312 * 5 4 3 8 8 C 1.46945 * 120.84648 * 173.81396 * 7 5 4 9 9 C 1.53142 * 109.03026 * 233.98870 * 8 7 5 10 10 C 1.53118 * 109.47754 * 305.93209 * 9 8 7 11 11 C 1.52853 * 109.34408 * 60.64938 * 10 9 8 12 12 H 1.08997 * 109.25458 * 57.50333 * 11 10 9 13 13 C 1.52776 * 110.21323 * 177.55634 * 11 10 9 14 14 N 1.45159 * 110.12757 * 66.65379 * 13 11 10 15 15 C 1.36938 * 121.15680 * 233.76985 * 14 13 11 16 16 H 1.07998 * 120.00872 * 34.58665 * 15 14 13 17 17 C 1.38813 * 119.99464 * 214.58506 * 15 14 13 18 18 N 1.31622 * 120.00141 * 5.66233 * 17 15 14 19 19 Si 1.86803 * 120.00194 * 185.65610 * 17 15 14 20 20 H 1.48505 * 109.46763 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47120 * 119.99830 * 19 17 15 22 22 H 1.48494 * 109.47269 * 240.00358 * 19 17 15 23 23 C 1.46961 * 118.06711 * 53.74917 * 14 13 11 24 24 C 1.53097 * 108.61947 * 305.70010 * 23 14 13 25 25 C 1.47315 * 120.84466 * 353.78890 * 7 5 4 26 26 H 1.08999 * 110.06668 * 4.95162 * 25 7 5 27 27 C 1.36311 * 107.22880 * 359.51723 * 4 3 2 28 28 C 1.34828 * 124.56606 * 179.66443 * 2 1 3 29 29 O 1.21977 * 127.14822 * 0.03501 * 28 2 1 30 30 H 1.08999 * 109.46971 * 270.33597 * 1 2 3 31 31 H 1.08998 * 109.47148 * 30.33755 * 1 2 3 32 32 H 1.08997 * 109.47224 * 150.33686 * 1 2 3 33 33 H 1.09004 * 109.54768 * 114.12498 * 8 7 5 34 34 H 1.09000 * 109.54653 * 353.85599 * 8 7 5 35 35 H 1.08996 * 109.47077 * 185.92897 * 9 8 7 36 36 H 1.09000 * 109.46981 * 65.92954 * 9 8 7 37 37 H 1.09006 * 109.49412 * 300.68735 * 10 9 8 38 38 H 1.09005 * 109.49456 * 180.60904 * 10 9 8 39 39 H 1.08999 * 109.51805 * 186.46873 * 13 11 10 40 40 H 1.09001 * 109.51297 * 306.64424 * 13 11 10 41 41 H 0.97005 * 119.99922 * 180.02562 * 18 17 15 42 42 H 1.09002 * 109.61282 * 185.96319 * 23 14 13 43 43 H 1.08997 * 109.76267 * 65.52791 * 23 14 13 44 44 H 1.08993 * 109.45892 * 295.31934 * 24 23 14 45 45 H 1.09001 * 109.45545 * 175.37750 * 24 23 14 46 46 H 1.08005 * 127.99241 * 180.30083 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 8 2.1511 0.9957 0.0000 4 6 3.4616 0.7081 -0.0042 5 6 4.5760 1.6852 -0.0100 6 8 5.7215 1.3008 0.1175 7 7 4.3188 3.0000 -0.1567 8 6 5.3916 3.9962 -0.0306 9 6 4.9810 5.0433 1.0088 10 6 3.6152 5.6258 0.6347 11 6 2.5747 4.5062 0.6184 12 1 2.5522 4.0221 1.5947 13 6 1.1917 5.0755 0.3064 14 7 1.1561 5.5848 -1.0525 15 6 0.7562 6.8673 -1.3181 16 1 0.9863 7.6600 -0.6217 17 6 0.0551 7.1484 -2.4828 18 7 -0.3225 6.1686 -3.2764 19 14 -0.3527 8.9172 -2.9236 20 1 0.1799 9.8240 -1.8751 21 1 0.2646 9.2565 -4.2309 22 1 -1.8261 9.0774 -3.0155 23 6 1.5629 4.6835 -2.1396 24 6 2.9598 4.1403 -1.8274 25 6 2.9551 3.4749 -0.4479 26 1 2.2555 2.6393 -0.4265 27 6 3.5769 -0.6501 0.0038 28 6 2.2300 -1.1103 0.0065 29 8 1.8473 -2.2684 0.0127 30 1 -0.3633 0.0060 1.0276 31 1 -0.3633 0.8869 -0.5191 32 1 -0.3633 -0.8930 -0.5086 33 1 5.5534 4.4817 -0.9930 34 1 6.3100 3.5046 0.2902 35 1 5.7224 5.8419 1.0324 36 1 4.9197 4.5754 1.9913 37 1 3.6730 6.0831 -0.3531 38 1 3.3277 6.3789 1.3684 39 1 0.4428 4.2903 0.4102 40 1 0.9677 5.8875 0.9982 41 1 -0.8121 6.3651 -4.0905 42 1 1.5858 5.2326 -3.0809 43 1 0.8573 3.8562 -2.2159 44 1 3.6777 4.9604 -1.8324 45 1 3.2415 3.4071 -2.5832 46 1 4.4813 -1.2405 0.0078 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021574620.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:12 Heat of formation + Delta-G solvation = 46.376677 kcal Electronic energy + Delta-G solvation = -31264.048353 eV Core-core repulsion = 27159.605662 eV Total energy + Delta-G solvation = -4104.442690 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -45.16873 -40.60132 -38.55439 -38.17911 -35.66241 -34.46157 -33.10246 -32.48657 -32.30013 -30.19692 -30.06381 -28.17501 -25.88941 -25.31166 -23.80791 -23.14947 -22.70667 -22.02413 -21.38938 -19.77157 -18.67446 -18.45112 -17.75112 -17.28067 -16.89229 -16.18813 -15.50593 -15.22539 -15.10180 -14.95145 -14.71903 -14.15645 -13.93657 -13.90307 -13.77390 -13.68049 -13.45319 -13.20847 -13.00159 -12.92627 -12.74590 -12.43721 -12.32833 -11.54348 -11.24577 -11.00627 -10.86446 -10.79863 -10.70303 -10.64824 -10.31000 -10.23875 -10.15261 -10.08852 -10.02886 -9.89397 -9.58841 -8.72050 -8.58522 -8.50506 -6.72523 -5.92988 -3.45076 0.46165 1.49802 2.49477 2.62117 2.90388 3.23541 3.27931 3.36280 3.37099 4.19761 4.36834 4.59962 4.82314 4.92597 5.01270 5.01781 5.03075 5.05649 5.14504 5.29377 5.32965 5.34404 5.39291 5.45426 5.59387 5.66681 5.69229 5.87046 5.93517 5.97137 6.07845 6.13341 6.20780 6.27386 6.37872 6.46017 6.50822 6.65020 6.70344 6.79436 7.16228 7.18971 7.51838 7.54160 7.67694 7.75042 7.96208 8.37247 9.08966 9.69893 10.27933 11.15424 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013657 B = 0.004221 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.806723 B = 6631.214612 C = 8021.045604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.453 5.453 3 O 0.007 5.993 4 C 0.036 3.964 5 C 0.597 3.403 6 O -0.513 6.513 7 N -0.588 5.588 8 C 0.113 3.887 9 C -0.133 4.133 10 C -0.109 4.109 11 C -0.110 4.110 12 H 0.061 0.939 13 C 0.156 3.844 14 N -0.584 5.584 15 C -0.255 4.255 16 H 0.065 0.935 17 C 0.011 3.989 18 N -0.903 5.903 19 Si 0.903 3.097 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.289 1.289 23 C 0.173 3.827 24 C -0.151 4.151 25 C 0.137 3.863 26 H 0.103 0.897 27 C -0.244 4.244 28 C 0.481 3.519 29 O -0.530 6.530 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.104 0.896 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.082 0.918 38 H 0.062 0.938 39 H 0.016 0.984 40 H 0.058 0.942 41 H 0.255 0.745 42 H 0.094 0.906 43 H 0.019 0.981 44 H 0.068 0.932 45 H 0.051 0.949 46 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.221 -6.023 6.948 11.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.217 5.217 3 O -0.002 6.002 4 C -0.022 4.022 5 C 0.381 3.619 6 O -0.389 6.389 7 N -0.318 5.318 8 C -0.008 4.008 9 C -0.172 4.172 10 C -0.146 4.146 11 C -0.131 4.131 12 H 0.079 0.921 13 C 0.028 3.972 14 N -0.306 5.306 15 C -0.385 4.385 16 H 0.083 0.917 17 C -0.189 4.189 18 N -0.547 5.547 19 Si 0.733 3.267 20 H -0.202 1.202 21 H -0.216 1.216 22 H -0.215 1.215 23 C 0.046 3.954 24 C -0.191 4.191 25 C 0.035 3.965 26 H 0.120 0.880 27 C -0.269 4.269 28 C 0.279 3.721 29 O -0.411 6.411 30 H 0.099 0.901 31 H 0.118 0.882 32 H 0.123 0.877 33 H 0.094 0.906 34 H 0.108 0.892 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.100 0.900 38 H 0.081 0.919 39 H 0.034 0.966 40 H 0.077 0.923 41 H 0.065 0.935 42 H 0.112 0.888 43 H 0.037 0.963 44 H 0.086 0.914 45 H 0.069 0.931 46 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 6.198 -6.580 6.863 11.349 hybrid contribution -0.295 0.853 -0.318 0.957 sum 5.903 -5.727 6.545 10.510 Atomic orbital electron populations 1.22193 0.70601 1.06022 1.04497 1.46276 1.06199 1.00190 1.69042 1.84355 1.15206 1.20095 1.80570 1.23454 0.81983 0.96200 1.00539 1.16886 0.85405 0.81332 0.78244 1.90840 1.18753 1.78248 1.51101 1.48583 1.11701 1.04553 1.66998 1.21708 0.89759 0.89215 1.00154 1.21960 0.98752 0.97970 0.98472 1.21505 0.92501 0.97339 1.03273 1.21903 0.98743 0.95609 0.96832 0.92063 1.20481 0.91152 0.96680 0.88931 1.43517 1.75919 1.11176 0.99955 1.19147 1.29012 0.84221 1.06113 0.91741 1.25244 0.97112 0.97337 0.99163 1.69928 1.40840 1.29982 1.13962 0.86214 0.77932 0.84445 0.78113 1.20176 1.21565 1.21542 1.20782 0.87742 0.92740 0.94117 1.22665 1.03217 0.99613 0.93581 1.22107 0.80236 0.97288 0.96872 0.87996 1.23258 0.99681 0.93223 1.10692 1.18310 0.86641 0.85531 0.81611 1.90948 1.79119 1.15936 1.55134 0.90095 0.88238 0.87727 0.90590 0.89166 0.90699 0.91986 0.89953 0.91941 0.96645 0.92310 0.93492 0.88811 0.96256 0.91369 0.93051 0.79210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.97 11.22 59.85 0.67 1.65 16 2 N -0.45 -5.87 3.68 -69.77 -0.26 -6.13 16 3 O 0.01 0.09 7.47 16.83 0.13 0.21 16 4 C 0.04 0.50 6.94 -36.18 -0.25 0.25 16 5 C 0.60 8.60 7.71 -12.17 -0.09 8.51 16 6 O -0.51 -8.24 16.36 5.37 0.09 -8.16 16 7 N -0.59 -8.03 2.66 -165.85 -0.44 -8.47 16 8 C 0.11 1.37 5.93 -3.73 -0.02 1.35 16 9 C -0.13 -1.51 6.08 -26.60 -0.16 -1.67 16 10 C -0.11 -1.50 4.87 -26.75 -0.13 -1.63 16 11 C -0.11 -1.62 2.50 -90.74 -0.23 -1.84 16 12 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 13 C 0.16 2.80 5.77 -4.88 -0.03 2.77 16 14 N -0.58 -12.67 2.60 -174.00 -0.45 -13.12 16 15 C -0.26 -6.27 9.56 -15.06 -0.14 -6.41 16 16 H 0.06 1.57 7.83 -52.49 -0.41 1.16 16 17 C 0.01 0.27 5.15 -17.43 -0.09 0.18 16 18 N -0.90 -24.13 11.01 55.49 0.61 -23.52 16 19 Si 0.90 20.21 29.56 -169.99 -5.02 15.18 16 20 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 21 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 23 C 0.17 3.61 5.23 -3.74 -0.02 3.59 16 24 C -0.15 -2.51 5.02 -26.60 -0.13 -2.64 16 25 C 0.14 2.01 2.53 -67.33 -0.17 1.84 16 26 H 0.10 1.53 3.96 -53.98 -0.21 1.32 16 27 C -0.24 -3.31 10.94 -38.70 -0.42 -3.73 16 28 C 0.48 7.16 8.02 -14.66 -0.12 7.05 16 29 O -0.53 -9.33 17.84 4.94 0.09 -9.24 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.10 0.91 8.03 -51.93 -0.42 0.49 16 33 H 0.08 0.90 7.25 -51.93 -0.38 0.53 16 34 H 0.09 1.07 7.06 -51.93 -0.37 0.71 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 1.32 6.15 -51.93 -0.32 1.00 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 40 H 0.06 1.06 7.90 -51.93 -0.41 0.65 16 41 H 0.25 6.65 8.31 -40.82 -0.34 6.31 16 42 H 0.09 2.27 6.17 -51.93 -0.32 1.94 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.07 1.15 5.32 -51.93 -0.28 0.87 16 45 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.19 2.27 8.06 -52.48 -0.42 1.85 16 LS Contribution 359.31 15.07 5.41 5.41 Total: -1.00 -29.73 359.31 -7.66 -37.39 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -6.47 Total: 1.18 kcal Atomic # 6 Polarization: 10.60 SS G_CDS: -1.34 Total: 9.25 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: -0.54 Total: -51.25 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: 0.30 Total: -17.18 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.73 -7.66 -37.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021574620.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.771 kcal (2) G-P(sol) polarization free energy of solvation -29.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds