Wall clock time and date at job start Tue Mar 31 2020 18:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 O 1.20917 * 124.56616 * 2 1 4 4 C 1.34172 * 112.18965 * 180.19524 * 3 2 1 5 5 C 1.48212 * 126.38089 * 179.78125 * 4 3 2 6 6 O 1.21500 * 119.99233 * 172.84983 * 5 4 3 7 7 N 1.34766 * 120.00419 * 352.85312 * 5 4 3 8 8 C 1.46945 * 120.84648 * 173.81396 * 7 5 4 9 9 C 1.53142 * 109.03026 * 233.98870 * 8 7 5 10 10 C 1.53118 * 109.47754 * 305.93209 * 9 8 7 11 11 C 1.52853 * 109.34408 * 60.64938 * 10 9 8 12 12 H 1.08997 * 109.25458 * 57.50333 * 11 10 9 13 13 C 1.52776 * 110.21323 * 177.55634 * 11 10 9 14 14 N 1.45159 * 110.12757 * 66.65379 * 13 11 10 15 15 C 1.36938 * 121.15680 * 233.76985 * 14 13 11 16 16 H 1.07998 * 120.00872 * 34.58665 * 15 14 13 17 17 C 1.38813 * 119.99464 * 214.58506 * 15 14 13 18 18 N 1.31622 * 120.00141 * 5.66233 * 17 15 14 19 19 Si 1.86803 * 120.00194 * 185.65610 * 17 15 14 20 20 H 1.48505 * 109.46763 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47120 * 119.99830 * 19 17 15 22 22 H 1.48494 * 109.47269 * 240.00358 * 19 17 15 23 23 C 1.46961 * 118.06711 * 53.74917 * 14 13 11 24 24 C 1.53097 * 108.61947 * 305.70010 * 23 14 13 25 25 C 1.47315 * 120.84466 * 353.78890 * 7 5 4 26 26 H 1.08999 * 110.06668 * 4.95162 * 25 7 5 27 27 C 1.36311 * 107.22880 * 359.51723 * 4 3 2 28 28 C 1.34828 * 124.56606 * 179.66443 * 2 1 3 29 29 O 1.21977 * 127.14822 * 0.03501 * 28 2 1 30 30 H 1.08999 * 109.46971 * 270.33597 * 1 2 3 31 31 H 1.08998 * 109.47148 * 30.33755 * 1 2 3 32 32 H 1.08997 * 109.47224 * 150.33686 * 1 2 3 33 33 H 1.09004 * 109.54768 * 114.12498 * 8 7 5 34 34 H 1.09000 * 109.54653 * 353.85599 * 8 7 5 35 35 H 1.08996 * 109.47077 * 185.92897 * 9 8 7 36 36 H 1.09000 * 109.46981 * 65.92954 * 9 8 7 37 37 H 1.09006 * 109.49412 * 300.68735 * 10 9 8 38 38 H 1.09005 * 109.49456 * 180.60904 * 10 9 8 39 39 H 1.08999 * 109.51805 * 186.46873 * 13 11 10 40 40 H 1.09001 * 109.51297 * 306.64424 * 13 11 10 41 41 H 0.97005 * 119.99922 * 180.02562 * 18 17 15 42 42 H 1.09002 * 109.61282 * 185.96319 * 23 14 13 43 43 H 1.08997 * 109.76267 * 65.52791 * 23 14 13 44 44 H 1.08993 * 109.45892 * 295.31934 * 24 23 14 45 45 H 1.09001 * 109.45545 * 175.37750 * 24 23 14 46 46 H 1.08005 * 127.99241 * 180.30083 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 8 2.1511 0.9957 0.0000 4 6 3.4616 0.7081 -0.0042 5 6 4.5760 1.6852 -0.0100 6 8 5.7215 1.3008 0.1175 7 7 4.3188 3.0000 -0.1567 8 6 5.3916 3.9962 -0.0306 9 6 4.9810 5.0433 1.0088 10 6 3.6152 5.6258 0.6347 11 6 2.5747 4.5062 0.6184 12 1 2.5522 4.0221 1.5947 13 6 1.1917 5.0755 0.3064 14 7 1.1561 5.5848 -1.0525 15 6 0.7562 6.8673 -1.3181 16 1 0.9863 7.6600 -0.6217 17 6 0.0551 7.1484 -2.4828 18 7 -0.3225 6.1686 -3.2764 19 14 -0.3527 8.9172 -2.9236 20 1 0.1799 9.8240 -1.8751 21 1 0.2646 9.2565 -4.2309 22 1 -1.8261 9.0774 -3.0155 23 6 1.5629 4.6835 -2.1396 24 6 2.9598 4.1403 -1.8274 25 6 2.9551 3.4749 -0.4479 26 1 2.2555 2.6393 -0.4265 27 6 3.5769 -0.6501 0.0038 28 6 2.2300 -1.1103 0.0065 29 8 1.8473 -2.2684 0.0127 30 1 -0.3633 0.0060 1.0276 31 1 -0.3633 0.8869 -0.5191 32 1 -0.3633 -0.8930 -0.5086 33 1 5.5534 4.4817 -0.9930 34 1 6.3100 3.5046 0.2902 35 1 5.7224 5.8419 1.0324 36 1 4.9197 4.5754 1.9913 37 1 3.6730 6.0831 -0.3531 38 1 3.3277 6.3789 1.3684 39 1 0.4428 4.2903 0.4102 40 1 0.9677 5.8875 0.9982 41 1 -0.8121 6.3651 -4.0905 42 1 1.5858 5.2326 -3.0809 43 1 0.8573 3.8562 -2.2159 44 1 3.6777 4.9604 -1.8324 45 1 3.2415 3.4071 -2.5832 46 1 4.4813 -1.2405 0.0078 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021574620.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:11 Heat of formation + Delta-G solvation = 29.452945 kcal Electronic energy + Delta-G solvation = -31264.782221 eV Core-core repulsion = 27159.605662 eV Total energy + Delta-G solvation = -4105.176559 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -46.26259 -41.78329 -39.82985 -39.36535 -37.11876 -35.49058 -34.38746 -33.96310 -33.42283 -31.72278 -31.48997 -29.15741 -27.29502 -26.72409 -24.89272 -24.36198 -24.06413 -23.41722 -22.61876 -20.97088 -19.89867 -19.53797 -19.14020 -18.40507 -18.29475 -17.42145 -16.94663 -16.39036 -16.32177 -16.24320 -16.08902 -15.54235 -15.21932 -15.10151 -15.05570 -14.88578 -14.68225 -14.32003 -14.26221 -14.04624 -13.75976 -13.64132 -13.59804 -12.99600 -12.93533 -12.67420 -12.36977 -12.17273 -12.07108 -11.91284 -11.81993 -11.62959 -11.50201 -11.36443 -11.28200 -11.11785 -10.94463 -10.53147 -9.77383 -9.67515 -8.52831 -7.84106 -5.36975 -0.63676 0.48176 1.35174 1.48075 1.52218 1.53166 1.60077 1.78019 2.13605 2.53245 3.07186 3.35413 3.53177 3.68008 3.76877 3.85560 3.90412 3.99299 4.07648 4.19316 4.24593 4.30844 4.35670 4.47388 4.56236 4.59799 4.62450 4.67702 4.81245 4.84468 4.91283 4.97522 4.99712 5.03348 5.05635 5.15098 5.20519 5.36105 5.40351 5.51197 5.66209 5.70995 5.78666 6.02574 6.39635 6.49196 6.62644 6.86934 7.21759 7.90893 8.43833 9.22075 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013657 B = 0.004221 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.806723 B = 6631.214612 C = 8021.045604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.447 5.447 3 O 0.010 5.990 4 C 0.032 3.968 5 C 0.603 3.397 6 O -0.528 6.528 7 N -0.583 5.583 8 C 0.109 3.891 9 C -0.122 4.122 10 C -0.105 4.105 11 C -0.101 4.101 12 H 0.081 0.919 13 C 0.154 3.846 14 N -0.597 5.597 15 C -0.253 4.253 16 H 0.066 0.934 17 C -0.040 4.040 18 N -0.934 5.934 19 Si 0.959 3.041 20 H -0.266 1.266 21 H -0.295 1.295 22 H -0.295 1.295 23 C 0.182 3.818 24 C -0.136 4.136 25 C 0.146 3.854 26 H 0.103 0.897 27 C -0.239 4.239 28 C 0.471 3.529 29 O -0.564 6.564 30 H 0.102 0.898 31 H 0.107 0.893 32 H 0.111 0.889 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.071 0.929 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.014 0.986 40 H 0.058 0.942 41 H 0.249 0.751 42 H 0.057 0.943 43 H 0.001 0.999 44 H 0.069 0.931 45 H 0.057 0.943 46 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.361 -5.623 8.490 12.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.209 5.209 3 O 0.000 6.000 4 C -0.027 4.027 5 C 0.387 3.613 6 O -0.406 6.406 7 N -0.313 5.313 8 C -0.012 4.012 9 C -0.160 4.160 10 C -0.143 4.143 11 C -0.122 4.122 12 H 0.099 0.901 13 C 0.027 3.973 14 N -0.319 5.319 15 C -0.383 4.383 16 H 0.084 0.916 17 C -0.236 4.236 18 N -0.580 5.580 19 Si 0.788 3.212 20 H -0.190 1.190 21 H -0.222 1.222 22 H -0.223 1.223 23 C 0.056 3.944 24 C -0.176 4.176 25 C 0.043 3.957 26 H 0.120 0.880 27 C -0.264 4.264 28 C 0.270 3.730 29 O -0.449 6.449 30 H 0.120 0.880 31 H 0.126 0.874 32 H 0.130 0.870 33 H 0.096 0.904 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.032 0.968 40 H 0.076 0.924 41 H 0.058 0.942 42 H 0.075 0.925 43 H 0.019 0.981 44 H 0.087 0.913 45 H 0.076 0.924 46 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 7.341 -6.153 8.437 12.764 hybrid contribution -0.679 0.745 -0.770 1.268 sum 6.662 -5.408 7.667 11.507 Atomic orbital electron populations 1.22539 0.68662 1.06766 1.06172 1.46534 1.07160 0.99671 1.67531 1.84342 1.15258 1.20195 1.80197 1.23366 0.82007 0.96122 1.01180 1.16835 0.85197 0.81362 0.77885 1.90838 1.19377 1.78426 1.51925 1.48511 1.11455 1.04696 1.66653 1.21885 0.89506 0.89072 1.00724 1.21891 0.97550 0.98191 0.98372 1.21440 0.93741 0.96989 1.02101 1.21777 0.96916 0.95895 0.97565 0.90050 1.20591 0.93227 0.96620 0.86838 1.43665 1.76182 1.10585 1.01504 1.19418 1.27655 0.85585 1.05663 0.91591 1.25861 0.97883 1.00236 0.99645 1.70079 1.42169 1.31452 1.14253 0.85325 0.77009 0.81179 0.77650 1.18993 1.22165 1.22259 1.20495 0.89745 0.91540 0.92662 1.22408 1.00217 0.99799 0.95189 1.21872 0.81039 0.97210 0.95558 0.87990 1.23429 0.99709 0.93277 1.09940 1.18471 0.87268 0.85418 0.81809 1.90926 1.79722 1.17156 1.57109 0.87975 0.87443 0.87048 0.90357 0.88411 0.88528 0.91077 0.92339 0.91547 0.96808 0.92362 0.94214 0.92451 0.98081 0.91277 0.92404 0.77906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.63 11.22 127.77 1.43 3.06 16 2 N -0.45 -10.97 3.68 -492.74 -1.82 -12.78 16 3 O 0.01 0.25 7.47 70.38 0.53 0.77 16 4 C 0.03 0.82 6.94 24.47 0.17 0.98 16 5 C 0.60 15.98 7.71 86.90 0.67 16.65 16 6 O -0.53 -15.76 16.36 -3.72 -0.06 -15.82 16 7 N -0.58 -14.48 2.66 -796.93 -2.12 -16.60 16 8 C 0.11 2.32 5.93 86.34 0.51 2.83 16 9 C -0.12 -2.34 6.08 30.68 0.19 -2.15 16 10 C -0.11 -2.64 4.87 30.58 0.15 -2.49 16 11 C -0.10 -2.73 2.50 -10.87 -0.03 -2.76 16 12 H 0.08 1.95 8.14 -2.39 -0.02 1.94 16 13 C 0.15 5.36 5.77 86.56 0.50 5.86 16 14 N -0.60 -25.85 2.60 -704.42 -1.83 -27.68 16 15 C -0.25 -12.40 9.56 84.03 0.80 -11.60 16 16 H 0.07 3.17 7.83 -2.91 -0.02 3.15 16 17 C -0.04 -2.08 5.15 84.86 0.44 -1.64 16 18 N -0.93 -51.15 11.01 21.65 0.24 -50.91 16 19 Si 0.96 41.87 29.56 68.60 2.03 43.90 16 20 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 21 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 22 H -0.30 -13.12 7.11 99.48 0.71 -12.41 16 23 C 0.18 7.72 5.23 86.32 0.45 8.17 16 24 C -0.14 -4.42 5.02 30.68 0.15 -4.27 16 25 C 0.15 4.01 2.53 44.94 0.11 4.13 16 26 H 0.10 2.88 3.96 -34.83 -0.14 2.74 16 27 C -0.24 -6.15 10.94 22.84 0.25 -5.90 16 28 C 0.47 13.59 8.02 85.25 0.68 14.27 16 29 O -0.56 -19.67 17.84 -5.24 -0.09 -19.76 16 30 H 0.10 1.37 8.14 -2.39 -0.02 1.36 16 31 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.11 1.81 8.03 -2.39 -0.02 1.80 16 33 H 0.08 1.66 7.25 -2.39 -0.02 1.64 16 34 H 0.10 2.01 7.06 -2.39 -0.02 1.99 16 35 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.06 1.77 6.15 -2.38 -0.01 1.76 16 38 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 39 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.06 2.02 7.90 -2.39 -0.02 2.00 16 41 H 0.25 13.36 8.31 -92.70 -0.77 12.59 16 42 H 0.06 2.86 6.17 -2.39 -0.01 2.85 16 43 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 44 H 0.07 2.25 5.32 -2.39 -0.01 2.24 16 45 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.20 4.55 8.06 -2.91 -0.02 4.52 16 Total: -1.00 -64.05 359.31 4.23 -59.81 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: 0.88 Total: 13.92 kcal Atomic # 6 Polarization: 18.66 SS G_CDS: 6.49 Total: 25.14 kcal Atomic # 7 Polarization: -102.44 SS G_CDS: -5.53 Total: -107.97 kcal Atomic # 8 Polarization: -35.18 SS G_CDS: 0.37 Total: -34.81 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -64.05 4.23 -59.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021574620.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.264 kcal (2) G-P(sol) polarization free energy of solvation -64.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds