Wall clock time and date at job start Tue Mar 31 2020 19:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35520 * 117.00433 * 2 1 4 4 C 1.38821 * 120.88954 * 0.02562 * 3 2 1 5 5 C 1.38708 * 119.19832 * 179.97438 * 4 3 2 6 6 O 1.35528 * 119.47468 * 179.97438 * 5 4 3 7 7 N 1.32595 * 121.05450 * 359.97438 * 5 4 3 8 8 C 1.31610 * 121.97392 * 359.70409 * 7 5 4 9 9 C 1.39538 * 120.66922 * 0.58707 * 8 7 5 10 10 C 1.47350 * 120.55576 * 179.69960 * 9 8 7 11 11 O 1.21609 * 120.00339 * 179.72457 * 10 9 8 12 12 N 1.34779 * 119.99739 * 359.72651 * 10 9 8 13 13 C 1.46496 * 119.99949 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47305 * 179.97438 * 13 12 10 15 15 H 1.09006 * 109.51785 * 54.92441 * 14 13 12 16 16 C 1.53039 * 109.49860 * 174.99868 * 14 13 12 17 17 C 1.53033 * 109.52816 * 181.31222 * 16 14 13 18 18 C 1.53195 * 109.31118 * 298.64429 * 17 16 14 19 19 N 1.46917 * 108.77632 * 54.63683 * 18 17 16 20 20 C 1.36944 * 120.63334 * 126.41102 * 19 18 17 21 21 H 1.08002 * 119.99574 * 207.67406 * 20 19 18 22 22 C 1.38804 * 119.99723 * 27.67797 * 20 19 18 23 23 N 1.31617 * 120.00554 * 17.35018 * 22 20 19 24 24 Si 1.86804 * 119.99695 * 197.35734 * 22 20 19 25 25 H 1.48494 * 109.47415 * 59.99802 * 24 22 20 26 26 H 1.48506 * 109.47200 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.46821 * 299.99362 * 24 22 20 28 28 C 1.46923 * 118.73848 * 306.38721 * 19 18 17 29 29 H 1.08996 * 109.47231 * 60.00510 * 1 2 3 30 30 H 1.09008 * 109.46972 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47520 * 300.00002 * 1 2 3 32 32 H 1.08004 * 120.40147 * 0.02562 * 4 3 2 33 33 H 0.96701 * 113.99561 * 90.00052 * 6 5 4 34 34 H 1.07999 * 119.66253 * 180.28780 * 8 7 5 35 35 H 0.96999 * 120.00220 * 0.02562 * 12 10 9 36 36 H 1.09000 * 109.47223 * 60.00055 * 13 12 10 37 37 H 1.08998 * 109.47337 * 300.00164 * 13 12 10 38 38 H 1.09006 * 109.45966 * 61.29814 * 16 14 13 39 39 H 1.09003 * 109.46232 * 301.32767 * 16 14 13 40 40 H 1.08997 * 109.49774 * 58.59578 * 17 16 14 41 41 H 1.08996 * 109.50356 * 178.69181 * 17 16 14 42 42 H 1.09006 * 109.58302 * 174.42140 * 18 17 16 43 43 H 1.08995 * 109.58732 * 294.70108 * 18 17 16 44 44 H 0.96998 * 120.00355 * 180.02562 * 23 22 20 45 45 H 1.08995 * 109.59196 * 173.39676 * 28 19 18 46 46 H 1.08995 * 109.58955 * 293.68275 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0443 1.2074 0.0000 4 6 1.3065 2.3834 0.0005 5 6 1.9725 3.6001 0.0011 6 8 1.2577 4.7515 0.0010 7 7 3.2973 3.6547 0.0016 8 6 4.0396 2.5679 0.0074 9 6 3.4500 1.3032 0.0010 10 6 4.2835 0.0881 0.0008 11 8 3.7590 -1.0091 0.0003 12 7 5.6272 0.1927 0.0013 13 6 6.4559 -1.0153 0.0018 14 6 7.9340 -0.6199 0.0017 15 1 8.1332 0.0448 0.8423 16 6 8.7988 -1.8762 0.1279 17 6 10.2763 -1.4789 0.1608 18 6 10.6398 -0.7707 -1.1482 19 7 9.7167 0.3544 -1.3492 20 6 10.1950 1.6184 -1.5705 21 1 9.6062 2.4767 -1.2824 22 6 11.4366 1.7963 -2.1651 23 7 12.0013 0.8038 -2.8196 24 14 12.3062 3.4446 -2.0363 25 1 12.5433 3.7689 -0.6067 26 1 13.6067 3.3753 -2.7499 27 1 11.4602 4.4998 -2.6496 28 6 8.2707 0.0978 -1.3089 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 0.2269 2.3512 0.0014 33 1 1.0500 5.0855 0.8845 34 1 5.1160 2.6558 0.0123 35 1 6.0456 1.0678 0.0022 36 1 6.2381 -1.6057 -0.8882 37 1 6.2374 -1.6056 0.8917 38 1 8.6173 -2.5293 -0.7258 39 1 8.5436 -2.4019 1.0480 40 1 10.4535 -0.8060 0.9998 41 1 10.8909 -2.3719 0.2740 42 1 11.6626 -0.3984 -1.0903 43 1 10.5522 -1.4709 -1.9789 44 1 12.8690 0.9281 -3.2348 45 1 7.7302 1.0430 -1.3571 46 1 7.9870 -0.5288 -2.1544 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023596423.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:07 Heat of formation + Delta-G solvation = -55.716769 kcal Electronic energy + Delta-G solvation = -28912.890130 eV Core-core repulsion = 24804.020335 eV Total energy + Delta-G solvation = -4108.869794 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.34141 -39.40613 -39.04334 -37.75587 -37.08192 -34.80436 -33.04504 -31.98043 -31.32056 -30.43914 -30.00606 -27.96065 -25.73820 -25.26620 -24.20120 -23.25596 -22.11827 -21.09404 -20.65743 -19.66081 -19.14022 -18.02715 -17.79224 -17.15981 -16.61132 -16.35740 -15.69396 -15.38509 -15.24784 -15.18024 -14.83696 -14.74516 -14.21057 -13.91253 -13.57993 -13.43812 -13.29769 -13.03022 -12.75994 -12.35015 -12.31769 -12.19371 -12.14887 -11.96600 -11.88745 -11.28924 -11.00451 -10.69766 -10.50177 -10.31246 -10.22932 -10.16383 -9.92189 -9.69710 -9.56181 -9.50312 -9.42289 -9.25577 -8.86586 -8.45669 -6.67685 -5.78771 -3.21444 0.23778 0.86061 2.64767 2.69104 3.14688 3.20167 3.38858 3.44797 3.45612 3.54241 4.12502 4.32710 4.46281 4.48944 4.66225 4.72538 4.87965 5.01756 5.05040 5.10018 5.18771 5.30306 5.38775 5.44741 5.47455 5.62943 5.83948 5.87531 5.96517 6.00968 6.24339 6.33102 6.38088 6.50072 6.59484 6.70552 6.73526 6.77949 6.86369 6.96955 7.02515 7.40259 7.48763 7.56546 7.67861 7.78694 8.26927 8.44515 9.20925 9.84551 10.41134 11.29503 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013187 B = 0.002850 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.771074 B = 9821.211985 C =11630.843612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.270 6.270 3 C 0.237 3.763 4 C -0.291 4.291 5 C 0.368 3.632 6 O -0.480 6.480 7 N -0.526 5.526 8 C 0.200 3.800 9 C -0.232 4.232 10 C 0.565 3.435 11 O -0.524 6.524 12 N -0.720 5.720 13 C 0.129 3.871 14 C -0.118 4.118 15 H 0.074 0.926 16 C -0.099 4.099 17 C -0.142 4.142 18 C 0.169 3.831 19 N -0.591 5.591 20 C -0.255 4.255 21 H 0.065 0.935 22 C 0.003 3.997 23 N -0.902 5.902 24 Si 0.902 3.098 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.282 1.282 28 C 0.153 3.847 29 H 0.060 0.940 30 H 0.108 0.892 31 H 0.059 0.941 32 H 0.151 0.849 33 H 0.406 0.594 34 H 0.174 0.826 35 H 0.400 0.600 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.057 0.943 39 H 0.047 0.953 40 H 0.054 0.946 41 H 0.049 0.951 42 H 0.086 0.914 43 H 0.017 0.983 44 H 0.254 0.746 45 H 0.050 0.950 46 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.787 0.410 9.336 23.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.178 6.178 3 C 0.181 3.819 4 C -0.313 4.313 5 C 0.191 3.809 6 O -0.288 6.288 7 N -0.248 5.248 8 C 0.041 3.959 9 C -0.238 4.238 10 C 0.351 3.649 11 O -0.401 6.401 12 N -0.373 5.373 13 C 0.006 3.994 14 C -0.139 4.139 15 H 0.092 0.908 16 C -0.137 4.137 17 C -0.181 4.181 18 C 0.043 3.957 19 N -0.313 5.313 20 C -0.385 4.385 21 H 0.083 0.917 22 C -0.195 4.195 23 N -0.546 5.546 24 Si 0.731 3.269 25 H -0.210 1.210 26 H -0.217 1.217 27 H -0.208 1.208 28 C 0.026 3.974 29 H 0.079 0.921 30 H 0.126 0.874 31 H 0.078 0.922 32 H 0.169 0.831 33 H 0.265 0.735 34 H 0.191 0.809 35 H 0.236 0.764 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.104 0.896 43 H 0.035 0.965 44 H 0.064 0.936 45 H 0.068 0.932 46 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -21.575 0.160 8.617 23.233 hybrid contribution -0.034 0.794 0.426 0.902 sum -21.609 0.954 9.043 23.444 Atomic orbital electron populations 1.23281 0.77952 1.04926 1.01600 1.86396 1.21402 1.24550 1.85406 1.19130 0.90843 0.84873 0.87087 1.22087 1.02208 0.91634 1.15363 1.19014 0.86620 0.84995 0.90259 1.84712 1.71196 1.38684 1.34186 1.67234 1.06403 1.33238 1.17967 1.22760 1.00032 0.84841 0.88253 1.20566 0.91462 0.96151 1.15636 1.17595 0.82083 0.88010 0.77259 1.90822 1.72827 1.27257 1.49212 1.45970 1.05438 1.10809 1.75049 1.21477 0.89825 0.86180 1.01927 1.21963 0.91413 0.98746 1.01777 0.90774 1.21336 0.96025 0.95964 1.00417 1.22169 0.94597 0.99519 1.01795 1.20794 0.96091 0.88131 0.90689 1.44029 0.98881 1.05592 1.82837 1.19127 1.02164 0.83716 1.33450 0.91698 1.25027 0.99968 0.97297 0.97255 1.70028 1.17453 1.31651 1.35466 0.86386 0.79007 0.83764 0.77712 1.21023 1.21676 1.20838 1.20896 0.87052 0.96889 0.92521 0.92106 0.87385 0.92225 0.83126 0.73486 0.80870 0.76400 0.91402 0.91799 0.92456 0.93422 0.92745 0.93206 0.89560 0.96471 0.93572 0.93184 0.96294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.84 101.05 0.99 1.11 16 2 O -0.27 -3.18 8.71 -39.55 -0.34 -3.53 16 3 C 0.24 2.74 6.74 -38.36 -0.26 2.49 16 4 C -0.29 -2.68 9.02 -39.19 -0.35 -3.03 16 5 C 0.37 3.78 7.73 -17.05 -0.13 3.65 16 6 O -0.48 -3.96 13.54 -18.28 -0.25 -4.20 16 7 N -0.53 -6.29 10.36 -13.04 -0.14 -6.43 16 8 C 0.20 2.24 10.71 -17.16 -0.18 2.06 16 9 C -0.23 -2.89 5.90 -104.70 -0.62 -3.51 16 10 C 0.56 8.21 7.76 -12.55 -0.10 8.11 16 11 O -0.52 -9.30 15.28 -16.03 -0.24 -9.54 16 12 N -0.72 -9.54 5.28 -61.41 -0.32 -9.87 16 13 C 0.13 1.85 5.07 -4.04 -0.02 1.83 16 14 C -0.12 -1.89 2.37 -90.51 -0.21 -2.10 16 15 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 16 C -0.10 -1.60 5.17 -26.69 -0.14 -1.74 16 17 C -0.14 -2.62 6.08 -26.61 -0.16 -2.78 16 18 C 0.17 3.94 5.31 -3.71 -0.02 3.92 16 19 N -0.59 -14.31 2.99 -172.35 -0.52 -14.83 16 20 C -0.26 -6.80 9.58 -15.06 -0.14 -6.95 16 21 H 0.07 1.68 7.89 -52.49 -0.41 1.26 16 22 C 0.00 0.09 4.91 -17.43 -0.09 0.00 16 23 N -0.90 -25.94 11.19 55.49 0.62 -25.32 16 24 Si 0.90 21.40 29.59 -169.99 -5.03 16.37 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 28 C 0.15 3.02 5.60 -3.73 -0.02 3.00 16 29 H 0.06 0.32 7.71 -51.93 -0.40 -0.08 16 30 H 0.11 0.55 8.14 -51.92 -0.42 0.13 16 31 H 0.06 0.28 7.70 -51.93 -0.40 -0.12 16 32 H 0.15 0.96 6.45 -52.48 -0.34 0.62 16 33 H 0.41 1.16 9.06 45.56 0.41 1.57 16 34 H 0.17 1.59 6.41 -52.49 -0.34 1.25 16 35 H 0.40 4.63 5.76 -40.82 -0.24 4.40 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.09 2.27 6.04 -51.93 -0.31 1.96 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 45 H 0.05 0.93 7.14 -51.93 -0.37 0.56 16 46 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 373.94 15.07 5.64 5.64 Total: -1.00 -35.01 373.94 -7.80 -42.81 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -5.76 Total: 2.84 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: -1.45 Total: 6.06 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: -0.35 Total: -56.44 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.84 Total: -17.27 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.01 -7.80 -42.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023596423.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.910 kcal (2) G-P(sol) polarization free energy of solvation -35.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds