Wall clock time and date at job start Tue Mar 31 2020 19:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35520 * 117.00433 * 2 1 4 4 C 1.38821 * 120.88954 * 0.02562 * 3 2 1 5 5 C 1.38708 * 119.19832 * 179.97438 * 4 3 2 6 6 O 1.35528 * 119.47468 * 179.97438 * 5 4 3 7 7 N 1.32595 * 121.05450 * 359.97438 * 5 4 3 8 8 C 1.31610 * 121.97392 * 359.70409 * 7 5 4 9 9 C 1.39538 * 120.66922 * 0.58707 * 8 7 5 10 10 C 1.47350 * 120.55576 * 179.69960 * 9 8 7 11 11 O 1.21609 * 120.00339 * 179.72457 * 10 9 8 12 12 N 1.34779 * 119.99739 * 359.72651 * 10 9 8 13 13 C 1.46496 * 119.99949 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47305 * 179.97438 * 13 12 10 15 15 H 1.09006 * 109.51785 * 54.92441 * 14 13 12 16 16 C 1.53039 * 109.49860 * 174.99868 * 14 13 12 17 17 C 1.53033 * 109.52816 * 181.31222 * 16 14 13 18 18 C 1.53195 * 109.31118 * 298.64429 * 17 16 14 19 19 N 1.46917 * 108.77632 * 54.63683 * 18 17 16 20 20 C 1.36944 * 120.63334 * 126.41102 * 19 18 17 21 21 H 1.08002 * 119.99574 * 207.67406 * 20 19 18 22 22 C 1.38804 * 119.99723 * 27.67797 * 20 19 18 23 23 N 1.31617 * 120.00554 * 17.35018 * 22 20 19 24 24 Si 1.86804 * 119.99695 * 197.35734 * 22 20 19 25 25 H 1.48494 * 109.47415 * 59.99802 * 24 22 20 26 26 H 1.48506 * 109.47200 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.46821 * 299.99362 * 24 22 20 28 28 C 1.46923 * 118.73848 * 306.38721 * 19 18 17 29 29 H 1.08996 * 109.47231 * 60.00510 * 1 2 3 30 30 H 1.09008 * 109.46972 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47520 * 300.00002 * 1 2 3 32 32 H 1.08004 * 120.40147 * 0.02562 * 4 3 2 33 33 H 0.96701 * 113.99561 * 90.00052 * 6 5 4 34 34 H 1.07999 * 119.66253 * 180.28780 * 8 7 5 35 35 H 0.96999 * 120.00220 * 0.02562 * 12 10 9 36 36 H 1.09000 * 109.47223 * 60.00055 * 13 12 10 37 37 H 1.08998 * 109.47337 * 300.00164 * 13 12 10 38 38 H 1.09006 * 109.45966 * 61.29814 * 16 14 13 39 39 H 1.09003 * 109.46232 * 301.32767 * 16 14 13 40 40 H 1.08997 * 109.49774 * 58.59578 * 17 16 14 41 41 H 1.08996 * 109.50356 * 178.69181 * 17 16 14 42 42 H 1.09006 * 109.58302 * 174.42140 * 18 17 16 43 43 H 1.08995 * 109.58732 * 294.70108 * 18 17 16 44 44 H 0.96998 * 120.00355 * 180.02562 * 23 22 20 45 45 H 1.08995 * 109.59196 * 173.39676 * 28 19 18 46 46 H 1.08995 * 109.58955 * 293.68275 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0443 1.2074 0.0000 4 6 1.3065 2.3834 0.0005 5 6 1.9725 3.6001 0.0011 6 8 1.2577 4.7515 0.0010 7 7 3.2973 3.6547 0.0016 8 6 4.0396 2.5679 0.0074 9 6 3.4500 1.3032 0.0010 10 6 4.2835 0.0881 0.0008 11 8 3.7590 -1.0091 0.0003 12 7 5.6272 0.1927 0.0013 13 6 6.4559 -1.0153 0.0018 14 6 7.9340 -0.6199 0.0017 15 1 8.1332 0.0448 0.8423 16 6 8.7988 -1.8762 0.1279 17 6 10.2763 -1.4789 0.1608 18 6 10.6398 -0.7707 -1.1482 19 7 9.7167 0.3544 -1.3492 20 6 10.1950 1.6184 -1.5705 21 1 9.6062 2.4767 -1.2824 22 6 11.4366 1.7963 -2.1651 23 7 12.0013 0.8038 -2.8196 24 14 12.3062 3.4446 -2.0363 25 1 12.5433 3.7689 -0.6067 26 1 13.6067 3.3753 -2.7499 27 1 11.4602 4.4998 -2.6496 28 6 8.2707 0.0978 -1.3089 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 0.2269 2.3512 0.0014 33 1 1.0500 5.0855 0.8845 34 1 5.1160 2.6558 0.0123 35 1 6.0456 1.0678 0.0022 36 1 6.2381 -1.6057 -0.8882 37 1 6.2374 -1.6056 0.8917 38 1 8.6173 -2.5293 -0.7258 39 1 8.5436 -2.4019 1.0480 40 1 10.4535 -0.8060 0.9998 41 1 10.8909 -2.3719 0.2740 42 1 11.6626 -0.3984 -1.0903 43 1 10.5522 -1.4709 -1.9789 44 1 12.8690 0.9281 -3.2348 45 1 7.7302 1.0430 -1.3571 46 1 7.9870 -0.5288 -2.1544 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023596423.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:06 Heat of formation + Delta-G solvation = -82.930365 kcal Electronic energy + Delta-G solvation = -28914.070200 eV Core-core repulsion = 24804.020335 eV Total energy + Delta-G solvation = -4110.049865 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.15871 -40.50103 -39.79412 -39.23366 -37.83285 -36.22845 -34.67418 -32.85774 -32.38386 -32.24931 -31.23512 -28.56034 -27.25170 -26.88920 -25.15186 -24.05656 -23.78386 -22.55798 -21.77464 -20.66769 -20.34605 -19.03189 -18.66642 -18.48258 -17.89478 -17.10941 -16.80978 -16.63657 -16.37826 -16.24555 -16.00029 -15.70472 -15.48108 -15.36156 -15.01394 -14.75834 -14.47039 -14.17376 -13.98034 -13.75056 -13.70269 -13.45638 -13.00116 -12.98147 -12.82669 -12.56280 -12.49660 -12.44877 -12.27847 -11.95662 -11.78780 -11.54800 -11.41096 -11.13691 -11.05181 -10.56826 -10.49440 -10.30276 -10.19493 -9.89432 -8.65074 -7.83944 -5.29147 -0.57398 0.07266 1.49756 1.51803 1.58125 1.72824 2.01518 2.12494 2.45335 2.53928 2.66660 3.30857 3.39392 3.55639 3.63865 3.64126 4.02056 4.04185 4.05427 4.11958 4.19322 4.32045 4.32451 4.40226 4.44600 4.57197 4.62381 4.68646 4.71855 4.80613 4.92019 4.94945 5.04135 5.14426 5.15955 5.25442 5.36844 5.41357 5.50196 5.60692 5.70189 5.81881 6.06841 6.41691 6.48886 6.52913 6.75103 7.18080 7.19288 7.89821 8.41541 9.22225 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013187 B = 0.002850 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.771074 B = 9821.211985 C =11630.843612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 O -0.299 6.299 3 C 0.229 3.771 4 C -0.279 4.279 5 C 0.370 3.630 6 O -0.484 6.484 7 N -0.551 5.551 8 C 0.205 3.795 9 C -0.254 4.254 10 C 0.566 3.434 11 O -0.562 6.562 12 N -0.714 5.714 13 C 0.140 3.860 14 C -0.100 4.100 15 H 0.080 0.920 16 C -0.097 4.097 17 C -0.130 4.130 18 C 0.172 3.828 19 N -0.609 5.609 20 C -0.261 4.261 21 H 0.073 0.927 22 C -0.053 4.053 23 N -0.937 5.937 24 Si 0.965 3.035 25 H -0.277 1.277 26 H -0.298 1.298 27 H -0.275 1.275 28 C 0.151 3.849 29 H 0.074 0.926 30 H 0.118 0.882 31 H 0.080 0.920 32 H 0.181 0.819 33 H 0.429 0.571 34 H 0.187 0.813 35 H 0.409 0.591 36 H 0.057 0.943 37 H 0.075 0.925 38 H 0.054 0.946 39 H 0.081 0.919 40 H 0.054 0.946 41 H 0.068 0.932 42 H 0.051 0.949 43 H -0.009 1.009 44 H 0.248 0.752 45 H 0.058 0.942 46 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.870 1.357 10.956 26.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.208 6.208 3 C 0.173 3.827 4 C -0.301 4.301 5 C 0.193 3.807 6 O -0.296 6.296 7 N -0.273 5.273 8 C 0.046 3.954 9 C -0.260 4.260 10 C 0.354 3.646 11 O -0.442 6.442 12 N -0.367 5.367 13 C 0.016 3.984 14 C -0.121 4.121 15 H 0.098 0.902 16 C -0.135 4.135 17 C -0.169 4.169 18 C 0.046 3.954 19 N -0.332 5.332 20 C -0.391 4.391 21 H 0.090 0.910 22 C -0.248 4.248 23 N -0.583 5.583 24 Si 0.793 3.207 25 H -0.203 1.203 26 H -0.225 1.225 27 H -0.201 1.201 28 C 0.025 3.975 29 H 0.093 0.907 30 H 0.136 0.864 31 H 0.099 0.901 32 H 0.198 0.802 33 H 0.292 0.708 34 H 0.204 0.796 35 H 0.246 0.754 36 H 0.076 0.924 37 H 0.094 0.906 38 H 0.073 0.927 39 H 0.100 0.900 40 H 0.073 0.927 41 H 0.087 0.913 42 H 0.069 0.931 43 H 0.009 0.991 44 H 0.057 0.943 45 H 0.076 0.924 46 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges -23.700 1.137 10.276 25.857 hybrid contribution 0.481 0.527 -0.102 0.721 sum -23.219 1.664 10.173 25.405 Atomic orbital electron populations 1.23608 0.75528 1.06282 1.03276 1.86360 1.24073 1.25036 1.85291 1.19323 0.90805 0.85643 0.86954 1.22260 1.03493 0.90277 1.14045 1.19210 0.86356 0.85910 0.89207 1.84666 1.70689 1.37962 1.36308 1.67276 1.07488 1.33469 1.19113 1.22906 1.00657 0.84318 0.87546 1.20491 0.92020 0.95579 1.17932 1.17872 0.82240 0.88216 0.76278 1.90793 1.73468 1.28718 1.51173 1.45896 1.05234 1.10952 1.74612 1.21289 0.88569 0.86528 1.02007 1.21724 0.92517 0.98442 0.99399 0.90151 1.21335 0.94053 0.96068 1.02042 1.21993 0.96777 0.99643 0.98448 1.20633 0.94494 0.87741 0.92502 1.44302 1.00771 1.05089 1.83018 1.19538 1.02273 0.85068 1.32215 0.90958 1.25786 1.00945 1.00469 0.97577 1.70194 1.17496 1.33639 1.37016 0.85375 0.77440 0.80112 0.77733 1.20251 1.22469 1.20077 1.21037 0.84673 0.97615 0.94152 0.90743 0.86386 0.90109 0.80152 0.70758 0.79588 0.75400 0.92442 0.90631 0.92726 0.90049 0.92731 0.91337 0.93052 0.99075 0.94264 0.92382 0.97726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.84 113.37 1.12 1.19 16 2 O -0.30 -6.76 8.71 -67.87 -0.59 -7.35 16 3 C 0.23 5.02 6.74 23.06 0.16 5.18 16 4 C -0.28 -4.50 9.02 22.52 0.20 -4.29 16 5 C 0.37 6.81 7.73 84.69 0.65 7.46 16 6 O -0.48 -6.71 13.54 -88.31 -1.20 -7.90 16 7 N -0.55 -12.34 10.36 -307.95 -3.19 -15.53 16 8 C 0.20 4.38 10.71 85.04 0.91 5.29 16 9 C -0.25 -6.14 5.90 -19.92 -0.12 -6.26 16 10 C 0.57 16.16 7.76 86.64 0.67 16.83 16 11 O -0.56 -19.84 15.28 16.30 0.25 -19.59 16 12 N -0.71 -18.14 5.28 -466.45 -2.46 -20.60 16 13 C 0.14 3.78 5.07 86.38 0.44 4.22 16 14 C -0.10 -3.04 2.37 -10.72 -0.03 -3.06 16 15 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 16 C -0.10 -2.92 5.17 30.62 0.16 -2.76 16 17 C -0.13 -4.65 6.08 30.67 0.19 -4.46 16 18 C 0.17 8.23 5.31 86.37 0.46 8.69 16 19 N -0.61 -29.75 2.99 -699.19 -2.09 -31.84 16 20 C -0.26 -13.98 9.58 84.03 0.81 -13.18 16 21 H 0.07 3.69 7.89 -2.91 -0.02 3.67 16 22 C -0.05 -2.92 4.91 84.86 0.42 -2.50 16 23 N -0.94 -55.65 11.19 21.65 0.24 -55.41 16 24 Si 0.97 44.49 29.59 68.60 2.03 46.51 16 25 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 26 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 27 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 28 C 0.15 5.90 5.60 86.35 0.48 6.38 16 29 H 0.07 0.60 7.71 -2.39 -0.02 0.58 16 30 H 0.12 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.08 0.52 7.70 -2.39 -0.02 0.51 16 32 H 0.18 1.67 6.45 -2.91 -0.02 1.65 16 33 H 0.43 1.21 9.06 -74.06 -0.67 0.54 16 34 H 0.19 3.20 6.41 -2.91 -0.02 3.18 16 35 H 0.41 8.92 5.76 -92.71 -0.53 8.38 16 36 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 39 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.05 2.80 6.04 -2.38 -0.01 2.79 16 43 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 44 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 45 H 0.06 2.13 7.14 -2.39 -0.02 2.11 16 46 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 Total: -1.00 -77.30 373.94 -0.68 -77.97 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -0.18 Total: 15.03 kcal Atomic # 6 Polarization: 12.20 SS G_CDS: 6.51 Total: 18.72 kcal Atomic # 7 Polarization: -115.88 SS G_CDS: -7.51 Total: -123.39 kcal Atomic # 8 Polarization: -33.31 SS G_CDS: -1.54 Total: -34.85 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.51 kcal Total: -77.30 -0.68 -77.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023596423.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.956 kcal (2) G-P(sol) polarization free energy of solvation -77.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds