Wall clock time and date at job start Tue Mar 31 2020 19:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35528 * 117.00062 * 2 1 4 4 C 1.38817 * 120.89159 * 359.97435 * 3 2 1 5 5 C 1.38713 * 119.19986 * 180.02562 * 4 3 2 6 6 O 1.35517 * 119.47318 * 180.02562 * 5 4 3 7 7 N 1.32593 * 121.05140 * 0.02562 * 5 4 3 8 8 C 1.31605 * 121.97763 * 359.65704 * 7 5 4 9 9 C 1.39555 * 120.67065 * 0.63461 * 8 7 5 10 10 C 1.47332 * 120.55734 * 179.68052 * 9 8 7 11 11 O 1.21617 * 119.99867 * 179.72014 * 10 9 8 12 12 N 1.34774 * 120.00345 * 359.71793 * 10 9 8 13 13 C 1.46499 * 120.00141 * 180.02562 * 12 10 9 14 14 C 1.53007 * 109.47178 * 180.02562 * 13 12 10 15 15 H 1.09004 * 109.51960 * 305.08379 * 14 13 12 16 16 C 1.53038 * 109.50110 * 185.00202 * 14 13 12 17 17 C 1.53036 * 109.54003 * 178.68265 * 16 14 13 18 18 C 1.53192 * 109.31293 * 61.36202 * 17 16 14 19 19 N 1.46924 * 108.77591 * 305.36430 * 18 17 16 20 20 C 1.36939 * 120.62993 * 233.58522 * 19 18 17 21 21 H 1.08002 * 119.99754 * 151.83452 * 20 19 18 22 22 C 1.38804 * 119.99958 * 331.83412 * 20 19 18 23 23 N 1.31622 * 120.00247 * 343.08098 * 22 20 19 24 24 Si 1.86810 * 119.99877 * 163.08052 * 22 20 19 25 25 H 1.48493 * 109.47005 * 90.00021 * 24 22 20 26 26 H 1.48501 * 109.47040 * 209.99959 * 24 22 20 27 27 H 1.48500 * 109.46752 * 329.99813 * 24 22 20 28 28 C 1.46920 * 118.73855 * 53.86375 * 19 18 17 29 29 H 1.09000 * 109.46670 * 299.99902 * 1 2 3 30 30 H 1.08995 * 109.47295 * 60.00292 * 1 2 3 31 31 H 1.08998 * 109.46710 * 180.02562 * 1 2 3 32 32 H 1.08003 * 120.40388 * 0.05023 * 4 3 2 33 33 H 0.96701 * 114.00201 * 90.00314 * 6 5 4 34 34 H 1.08003 * 119.67271 * 180.30736 * 8 7 5 35 35 H 0.97003 * 119.99813 * 0.02562 * 12 10 9 36 36 H 1.08996 * 109.47340 * 60.00547 * 13 12 10 37 37 H 1.09003 * 109.47133 * 299.99741 * 13 12 10 38 38 H 1.08998 * 109.46122 * 58.65861 * 16 14 13 39 39 H 1.09004 * 109.44451 * 298.69553 * 16 14 13 40 40 H 1.08996 * 109.49733 * 301.41024 * 17 16 14 41 41 H 1.09005 * 109.52294 * 181.33131 * 17 16 14 42 42 H 1.09001 * 109.58625 * 185.57745 * 18 17 16 43 43 H 1.08997 * 109.70196 * 65.22177 * 18 17 16 44 44 H 0.97001 * 120.00021 * 180.02562 * 23 22 20 45 45 H 1.08999 * 109.58855 * 65.92358 * 28 19 18 46 46 H 1.08998 * 109.58990 * 186.35233 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2076 0.0000 4 6 1.3065 2.3834 -0.0005 5 6 1.9725 3.6002 -0.0011 6 8 1.2577 4.7515 -0.0011 7 7 3.2973 3.6548 -0.0016 8 6 4.0396 2.5681 0.0051 9 6 3.4501 1.3032 -0.0003 10 6 4.2835 0.0883 0.0001 11 8 3.7590 -1.0089 0.0005 12 7 5.6272 0.1929 -0.0001 13 6 6.4559 -1.0152 -0.0002 14 6 7.9340 -0.6198 0.0003 15 1 8.1334 0.0451 -0.8402 16 6 8.7990 -1.8759 -0.1257 17 6 10.2766 -1.4788 -0.1584 18 6 10.6400 -0.7708 1.1506 19 7 9.7170 0.3546 1.3516 20 6 10.1955 1.6184 1.5730 21 1 9.6104 2.4768 1.2776 22 6 11.4325 1.7962 2.1770 23 7 11.9943 0.8020 2.8317 24 14 12.3002 3.4465 2.0608 25 1 11.8957 4.3001 3.2065 26 1 13.7699 3.2365 2.0945 27 1 11.9246 4.1145 0.7888 28 6 8.2710 0.0971 1.3166 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2270 2.3513 -0.0001 33 1 1.0506 5.0859 0.8823 34 1 5.1161 2.6559 0.0094 35 1 6.0456 1.0680 -0.0001 36 1 6.2378 -1.6054 -0.8902 37 1 6.2379 -1.6055 0.8898 38 1 8.5439 -2.4018 -1.0457 39 1 8.6172 -2.5288 0.7280 40 1 10.4540 -0.8060 -0.9973 41 1 10.8914 -2.3718 -0.2719 42 1 11.6629 -0.3986 1.0930 43 1 10.5515 -1.4690 1.9829 44 1 12.8586 0.9264 3.2541 45 1 7.9915 -0.5331 2.1609 46 1 7.7302 1.0420 1.3685 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023596424.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:12 Heat of formation + Delta-G solvation = -56.035676 kcal Electronic energy + Delta-G solvation = -28912.575917 eV Core-core repulsion = 24803.692294 eV Total energy + Delta-G solvation = -4108.883623 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.33910 -39.40002 -39.03970 -37.73943 -37.07800 -34.80165 -33.04477 -31.97936 -31.31763 -30.43760 -29.99876 -27.95896 -25.73497 -25.26739 -24.20032 -23.25420 -22.11335 -21.09102 -20.65732 -19.65757 -19.14574 -18.02564 -17.79099 -17.15058 -16.61793 -16.35404 -15.69372 -15.39337 -15.22473 -15.19261 -14.83207 -14.74463 -14.22570 -13.84175 -13.66661 -13.42924 -13.28719 -13.00667 -12.77074 -12.34538 -12.32099 -12.18732 -12.15586 -11.96452 -11.88691 -11.27984 -11.01750 -10.70127 -10.49662 -10.31055 -10.23160 -10.16951 -9.92925 -9.70109 -9.55846 -9.50635 -9.41650 -9.25451 -8.86363 -8.46627 -6.67116 -5.79536 -3.22739 0.23872 0.86220 2.64321 2.69567 3.13866 3.21708 3.36961 3.44387 3.46318 3.54910 4.12522 4.32819 4.46329 4.48339 4.66487 4.72503 4.88168 5.01868 5.05118 5.10332 5.18896 5.30177 5.38840 5.44527 5.47979 5.62722 5.83992 5.87659 5.96553 6.00727 6.24702 6.32895 6.37680 6.50143 6.59237 6.70475 6.73584 6.77814 6.86321 6.96619 7.02814 7.39997 7.48898 7.56765 7.67586 7.78261 8.27133 8.44185 9.20322 9.83859 10.40788 11.28648 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013159 B = 0.002853 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.260048 B = 9811.643674 C =11628.455687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.270 6.270 3 C 0.237 3.763 4 C -0.291 4.291 5 C 0.368 3.632 6 O -0.480 6.480 7 N -0.527 5.527 8 C 0.200 3.800 9 C -0.232 4.232 10 C 0.565 3.435 11 O -0.524 6.524 12 N -0.720 5.720 13 C 0.129 3.871 14 C -0.119 4.119 15 H 0.074 0.926 16 C -0.099 4.099 17 C -0.141 4.141 18 C 0.169 3.831 19 N -0.591 5.591 20 C -0.254 4.254 21 H 0.065 0.935 22 C 0.003 3.997 23 N -0.902 5.902 24 Si 0.901 3.099 25 H -0.287 1.287 26 H -0.290 1.290 27 H -0.279 1.279 28 C 0.153 3.847 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.108 0.892 32 H 0.151 0.849 33 H 0.407 0.593 34 H 0.174 0.826 35 H 0.400 0.600 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.047 0.953 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.049 0.951 42 H 0.086 0.914 43 H 0.017 0.983 44 H 0.254 0.746 45 H 0.019 0.981 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.769 0.426 -5.877 22.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.178 6.178 3 C 0.181 3.819 4 C -0.313 4.313 5 C 0.191 3.809 6 O -0.289 6.289 7 N -0.249 5.249 8 C 0.041 3.959 9 C -0.238 4.238 10 C 0.350 3.650 11 O -0.401 6.401 12 N -0.373 5.373 13 C 0.006 3.994 14 C -0.139 4.139 15 H 0.092 0.908 16 C -0.137 4.137 17 C -0.181 4.181 18 C 0.043 3.957 19 N -0.314 5.314 20 C -0.384 4.384 21 H 0.083 0.917 22 C -0.196 4.196 23 N -0.546 5.546 24 Si 0.730 3.270 25 H -0.214 1.214 26 H -0.216 1.216 27 H -0.204 1.204 28 C 0.027 3.973 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.126 0.874 32 H 0.169 0.831 33 H 0.266 0.734 34 H 0.191 0.809 35 H 0.236 0.764 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.104 0.896 43 H 0.035 0.965 44 H 0.064 0.936 45 H 0.037 0.963 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -21.557 0.175 -6.376 22.481 hybrid contribution -0.026 0.788 0.508 0.938 sum -21.583 0.963 -5.867 22.387 Atomic orbital electron populations 1.23282 0.77954 1.04925 1.01600 1.86401 1.21401 1.24547 1.85411 1.19132 0.90840 0.84871 0.87083 1.22086 1.02209 0.91636 1.15373 1.19012 0.86617 0.85001 0.90237 1.84693 1.71193 1.38691 1.34294 1.67233 1.06403 1.33248 1.17970 1.22766 1.00036 0.84836 0.88236 1.20567 0.91460 0.96148 1.15650 1.17592 0.82085 0.88015 0.77262 1.90824 1.72828 1.27261 1.49223 1.45970 1.05437 1.10812 1.75037 1.21480 0.89845 0.86175 1.01911 1.22053 0.91378 0.98745 1.01770 0.90754 1.21334 0.96022 0.95974 1.00409 1.22165 0.94598 0.99519 1.01774 1.20792 0.96053 0.88141 0.90699 1.44048 0.98914 1.05580 1.82824 1.19149 1.02513 0.83740 1.32982 0.91716 1.25049 1.00017 0.97270 0.97224 1.70037 1.17733 1.31456 1.35364 0.86328 0.78947 0.83718 0.77958 1.21400 1.21598 1.20431 1.20993 0.87064 0.96850 0.92438 0.92175 0.92153 0.87387 0.83128 0.73386 0.80866 0.76400 0.91816 0.91410 0.93426 0.92471 0.92734 0.93207 0.89609 0.96454 0.93633 0.96268 0.93158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.84 101.05 0.99 1.11 16 2 O -0.27 -3.19 8.71 -39.58 -0.34 -3.53 16 3 C 0.24 2.75 6.74 -38.36 -0.26 2.49 16 4 C -0.29 -2.68 9.02 -39.19 -0.35 -3.04 16 5 C 0.37 3.78 7.73 -17.05 -0.13 3.65 16 6 O -0.48 -3.96 13.54 -18.25 -0.25 -4.21 16 7 N -0.53 -6.29 10.36 -13.04 -0.14 -6.43 16 8 C 0.20 2.25 10.71 -17.16 -0.18 2.06 16 9 C -0.23 -2.89 5.90 -104.70 -0.62 -3.51 16 10 C 0.56 8.21 7.76 -12.56 -0.10 8.11 16 11 O -0.52 -9.30 15.28 -16.04 -0.25 -9.55 16 12 N -0.72 -9.55 5.28 -61.41 -0.32 -9.87 16 13 C 0.13 1.85 5.07 -4.04 -0.02 1.83 16 14 C -0.12 -1.90 2.39 -90.27 -0.22 -2.11 16 15 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 16 C -0.10 -1.60 5.16 -26.69 -0.14 -1.73 16 17 C -0.14 -2.61 6.08 -26.61 -0.16 -2.78 16 18 C 0.17 3.94 5.30 -3.71 -0.02 3.92 16 19 N -0.59 -14.26 2.99 -172.06 -0.51 -14.78 16 20 C -0.25 -6.75 9.58 -15.06 -0.14 -6.90 16 21 H 0.07 1.67 7.89 -52.49 -0.41 1.25 16 22 C 0.00 0.08 4.92 -17.43 -0.09 0.00 16 23 N -0.90 -25.84 11.20 55.49 0.62 -25.22 16 24 Si 0.90 21.30 29.59 -169.99 -5.03 16.27 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 27 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 28 C 0.15 3.01 5.63 -3.49 -0.02 2.99 16 29 H 0.06 0.29 7.71 -51.93 -0.40 -0.11 16 30 H 0.06 0.31 7.71 -51.93 -0.40 -0.09 16 31 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.15 0.96 6.45 -52.48 -0.34 0.62 16 33 H 0.41 1.24 9.06 45.56 0.41 1.65 16 34 H 0.17 1.59 6.41 -52.48 -0.34 1.25 16 35 H 0.40 4.63 5.77 -40.82 -0.24 4.40 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.09 2.25 6.06 -51.93 -0.31 1.94 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.05 0.93 7.16 -51.93 -0.37 0.56 16 LS Contribution 374.03 15.07 5.64 5.64 Total: -1.00 -34.85 374.03 -7.80 -42.65 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -5.76 Total: 2.94 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: -1.45 Total: 6.09 kcal Atomic # 7 Polarization: -55.94 SS G_CDS: -0.35 Total: -56.29 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: -0.84 Total: -17.29 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.85 -7.80 -42.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023596424.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.389 kcal (2) G-P(sol) polarization free energy of solvation -34.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds