Wall clock time and date at job start Tue Mar 31 2020 19:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35528 * 117.00062 * 2 1 4 4 C 1.38817 * 120.89159 * 359.97435 * 3 2 1 5 5 C 1.38713 * 119.19986 * 180.02562 * 4 3 2 6 6 O 1.35517 * 119.47318 * 180.02562 * 5 4 3 7 7 N 1.32593 * 121.05140 * 0.02562 * 5 4 3 8 8 C 1.31605 * 121.97763 * 359.65704 * 7 5 4 9 9 C 1.39555 * 120.67065 * 0.63461 * 8 7 5 10 10 C 1.47332 * 120.55734 * 179.68052 * 9 8 7 11 11 O 1.21617 * 119.99867 * 179.72014 * 10 9 8 12 12 N 1.34774 * 120.00345 * 359.71793 * 10 9 8 13 13 C 1.46499 * 120.00141 * 180.02562 * 12 10 9 14 14 C 1.53007 * 109.47178 * 180.02562 * 13 12 10 15 15 H 1.09004 * 109.51960 * 305.08379 * 14 13 12 16 16 C 1.53038 * 109.50110 * 185.00202 * 14 13 12 17 17 C 1.53036 * 109.54003 * 178.68265 * 16 14 13 18 18 C 1.53192 * 109.31293 * 61.36202 * 17 16 14 19 19 N 1.46924 * 108.77591 * 305.36430 * 18 17 16 20 20 C 1.36939 * 120.62993 * 233.58522 * 19 18 17 21 21 H 1.08002 * 119.99754 * 151.83452 * 20 19 18 22 22 C 1.38804 * 119.99958 * 331.83412 * 20 19 18 23 23 N 1.31622 * 120.00247 * 343.08098 * 22 20 19 24 24 Si 1.86810 * 119.99877 * 163.08052 * 22 20 19 25 25 H 1.48493 * 109.47005 * 90.00021 * 24 22 20 26 26 H 1.48501 * 109.47040 * 209.99959 * 24 22 20 27 27 H 1.48500 * 109.46752 * 329.99813 * 24 22 20 28 28 C 1.46920 * 118.73855 * 53.86375 * 19 18 17 29 29 H 1.09000 * 109.46670 * 299.99902 * 1 2 3 30 30 H 1.08995 * 109.47295 * 60.00292 * 1 2 3 31 31 H 1.08998 * 109.46710 * 180.02562 * 1 2 3 32 32 H 1.08003 * 120.40388 * 0.05023 * 4 3 2 33 33 H 0.96701 * 114.00201 * 90.00314 * 6 5 4 34 34 H 1.08003 * 119.67271 * 180.30736 * 8 7 5 35 35 H 0.97003 * 119.99813 * 0.02562 * 12 10 9 36 36 H 1.08996 * 109.47340 * 60.00547 * 13 12 10 37 37 H 1.09003 * 109.47133 * 299.99741 * 13 12 10 38 38 H 1.08998 * 109.46122 * 58.65861 * 16 14 13 39 39 H 1.09004 * 109.44451 * 298.69553 * 16 14 13 40 40 H 1.08996 * 109.49733 * 301.41024 * 17 16 14 41 41 H 1.09005 * 109.52294 * 181.33131 * 17 16 14 42 42 H 1.09001 * 109.58625 * 185.57745 * 18 17 16 43 43 H 1.08997 * 109.70196 * 65.22177 * 18 17 16 44 44 H 0.97001 * 120.00021 * 180.02562 * 23 22 20 45 45 H 1.08999 * 109.58855 * 65.92358 * 28 19 18 46 46 H 1.08998 * 109.58990 * 186.35233 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2076 0.0000 4 6 1.3065 2.3834 -0.0005 5 6 1.9725 3.6002 -0.0011 6 8 1.2577 4.7515 -0.0011 7 7 3.2973 3.6548 -0.0016 8 6 4.0396 2.5681 0.0051 9 6 3.4501 1.3032 -0.0003 10 6 4.2835 0.0883 0.0001 11 8 3.7590 -1.0089 0.0005 12 7 5.6272 0.1929 -0.0001 13 6 6.4559 -1.0152 -0.0002 14 6 7.9340 -0.6198 0.0003 15 1 8.1334 0.0451 -0.8402 16 6 8.7990 -1.8759 -0.1257 17 6 10.2766 -1.4788 -0.1584 18 6 10.6400 -0.7708 1.1506 19 7 9.7170 0.3546 1.3516 20 6 10.1955 1.6184 1.5730 21 1 9.6104 2.4768 1.2776 22 6 11.4325 1.7962 2.1770 23 7 11.9943 0.8020 2.8317 24 14 12.3002 3.4465 2.0608 25 1 11.8957 4.3001 3.2065 26 1 13.7699 3.2365 2.0945 27 1 11.9246 4.1145 0.7888 28 6 8.2710 0.0971 1.3166 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2270 2.3513 -0.0001 33 1 1.0506 5.0859 0.8823 34 1 5.1161 2.6559 0.0094 35 1 6.0456 1.0680 -0.0001 36 1 6.2378 -1.6054 -0.8902 37 1 6.2379 -1.6055 0.8898 38 1 8.5439 -2.4018 -1.0457 39 1 8.6172 -2.5288 0.7280 40 1 10.4540 -0.8060 -0.9973 41 1 10.8914 -2.3718 -0.2719 42 1 11.6629 -0.3986 1.0930 43 1 10.5515 -1.4690 1.9829 44 1 12.8586 0.9264 3.2541 45 1 7.9915 -0.5331 2.1609 46 1 7.7302 1.0420 1.3685 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023596424.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:11 Heat of formation + Delta-G solvation = -83.058031 kcal Electronic energy + Delta-G solvation = -28913.747694 eV Core-core repulsion = 24803.692294 eV Total energy + Delta-G solvation = -4110.055401 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.15715 -40.49338 -39.79119 -39.21756 -37.83015 -36.22264 -34.67072 -32.85644 -32.38122 -32.24089 -31.22615 -28.55916 -27.24537 -26.88738 -25.15126 -24.05546 -23.77299 -22.55363 -21.77423 -20.67099 -20.34338 -19.02968 -18.66517 -18.47757 -17.89236 -17.10163 -16.80737 -16.65535 -16.35493 -16.24842 -15.99128 -15.72403 -15.46858 -15.34957 -15.00268 -14.78227 -14.46462 -14.16862 -13.98216 -13.74024 -13.69280 -13.46656 -12.99050 -12.97298 -12.84751 -12.56411 -12.49552 -12.46118 -12.24338 -11.95387 -11.79132 -11.54867 -11.41111 -11.13355 -11.04649 -10.56738 -10.49971 -10.30242 -10.19439 -9.89279 -8.63790 -7.83821 -5.29573 -0.57444 0.07359 1.48975 1.50949 1.60091 1.72800 2.01618 2.12243 2.45023 2.53884 2.67805 3.31379 3.39331 3.55750 3.63900 3.64587 4.02370 4.04365 4.05151 4.12390 4.19365 4.31981 4.32472 4.40220 4.44715 4.57197 4.62066 4.68717 4.71901 4.81208 4.92214 4.94900 5.04378 5.14506 5.15833 5.25614 5.36795 5.41504 5.50440 5.60999 5.70498 5.82007 6.06801 6.42264 6.48639 6.52828 6.74787 7.18355 7.19425 7.89938 8.41999 9.22360 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013159 B = 0.002853 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.260048 B = 9811.643674 C =11628.455687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 O -0.299 6.299 3 C 0.229 3.771 4 C -0.279 4.279 5 C 0.370 3.630 6 O -0.484 6.484 7 N -0.551 5.551 8 C 0.205 3.795 9 C -0.254 4.254 10 C 0.566 3.434 11 O -0.562 6.562 12 N -0.714 5.714 13 C 0.140 3.860 14 C -0.101 4.101 15 H 0.079 0.921 16 C -0.097 4.097 17 C -0.130 4.130 18 C 0.172 3.828 19 N -0.609 5.609 20 C -0.259 4.259 21 H 0.073 0.927 22 C -0.053 4.053 23 N -0.937 5.937 24 Si 0.964 3.036 25 H -0.286 1.286 26 H -0.296 1.296 27 H -0.267 1.267 28 C 0.151 3.849 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.118 0.882 32 H 0.181 0.819 33 H 0.429 0.571 34 H 0.187 0.813 35 H 0.409 0.591 36 H 0.074 0.926 37 H 0.058 0.942 38 H 0.080 0.920 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.068 0.932 42 H 0.050 0.950 43 H -0.008 1.008 44 H 0.248 0.752 45 H 0.006 0.994 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.859 1.364 -7.225 24.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.208 6.208 3 C 0.173 3.827 4 C -0.301 4.301 5 C 0.193 3.807 6 O -0.296 6.296 7 N -0.273 5.273 8 C 0.046 3.954 9 C -0.260 4.260 10 C 0.354 3.646 11 O -0.442 6.442 12 N -0.367 5.367 13 C 0.016 3.984 14 C -0.121 4.121 15 H 0.098 0.902 16 C -0.135 4.135 17 C -0.169 4.169 18 C 0.047 3.953 19 N -0.332 5.332 20 C -0.390 4.390 21 H 0.090 0.910 22 C -0.248 4.248 23 N -0.584 5.584 24 Si 0.793 3.207 25 H -0.213 1.213 26 H -0.223 1.223 27 H -0.192 1.192 28 C 0.025 3.975 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.136 0.864 32 H 0.198 0.802 33 H 0.292 0.708 34 H 0.204 0.796 35 H 0.246 0.754 36 H 0.092 0.908 37 H 0.077 0.923 38 H 0.099 0.901 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.086 0.914 42 H 0.069 0.931 43 H 0.010 0.990 44 H 0.057 0.943 45 H 0.024 0.976 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -23.690 1.144 -7.725 24.944 hybrid contribution 0.493 0.521 0.969 1.206 sum -23.197 1.665 -6.756 24.218 Atomic orbital electron populations 1.23608 0.75529 1.06279 1.03276 1.86365 1.24073 1.25032 1.85296 1.19324 0.90804 0.85641 0.86955 1.22259 1.03493 0.90278 1.14038 1.19207 0.86353 0.85916 0.89205 1.84650 1.70686 1.37970 1.36319 1.67272 1.07488 1.33480 1.19099 1.22911 1.00660 0.84313 0.87536 1.20492 0.92019 0.95578 1.17932 1.17869 0.82243 0.88218 0.76281 1.90795 1.73472 1.28721 1.51183 1.45895 1.05230 1.10954 1.74601 1.21290 0.88597 0.86524 1.01988 1.21813 0.92476 0.98428 0.99414 0.90249 1.21333 0.94062 0.96088 1.02017 1.21991 0.96767 0.99637 0.98457 1.20627 0.94451 0.87763 0.92479 1.44319 1.00806 1.05070 1.83004 1.19553 1.02595 0.85079 1.31737 0.90983 1.25801 1.01005 1.00413 0.97560 1.70199 1.17818 1.33440 1.36893 0.85324 0.77239 0.80000 0.78175 1.21285 1.22285 1.19216 1.21134 0.84668 0.97606 0.94045 0.90313 0.90538 0.86391 0.80154 0.70769 0.79587 0.75397 0.90777 0.92331 0.90143 0.92676 0.92765 0.91355 0.93125 0.99023 0.94279 0.97596 0.92285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.84 113.37 1.12 1.19 16 2 O -0.30 -6.76 8.71 -67.95 -0.59 -7.35 16 3 C 0.23 5.02 6.74 23.06 0.16 5.18 16 4 C -0.28 -4.49 9.02 22.52 0.20 -4.29 16 5 C 0.37 6.80 7.73 84.69 0.65 7.46 16 6 O -0.48 -6.71 13.54 -88.20 -1.19 -7.90 16 7 N -0.55 -12.33 10.36 -307.95 -3.19 -15.52 16 8 C 0.20 4.38 10.71 85.04 0.91 5.29 16 9 C -0.25 -6.14 5.90 -19.92 -0.12 -6.26 16 10 C 0.57 16.16 7.76 86.64 0.67 16.83 16 11 O -0.56 -19.85 15.28 16.28 0.25 -19.61 16 12 N -0.71 -18.14 5.28 -466.45 -2.46 -20.60 16 13 C 0.14 3.78 5.07 86.38 0.44 4.22 16 14 C -0.10 -3.05 2.39 -10.57 -0.03 -3.08 16 15 H 0.08 2.38 8.14 -2.39 -0.02 2.37 16 16 C -0.10 -2.92 5.16 30.62 0.16 -2.76 16 17 C -0.13 -4.65 6.08 30.67 0.19 -4.46 16 18 C 0.17 8.22 5.30 86.36 0.46 8.68 16 19 N -0.61 -29.61 2.99 -698.28 -2.09 -31.69 16 20 C -0.26 -13.84 9.58 84.03 0.81 -13.03 16 21 H 0.07 3.66 7.89 -2.91 -0.02 3.64 16 22 C -0.05 -2.91 4.92 84.86 0.42 -2.49 16 23 N -0.94 -55.42 11.20 21.65 0.24 -55.18 16 24 Si 0.96 44.29 29.59 68.60 2.03 46.32 16 25 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 26 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 27 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 28 C 0.15 5.86 5.63 86.51 0.49 6.35 16 29 H 0.08 0.55 7.71 -2.39 -0.02 0.53 16 30 H 0.08 0.58 7.71 -2.39 -0.02 0.56 16 31 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.18 1.67 6.45 -2.91 -0.02 1.65 16 33 H 0.43 1.42 9.06 -74.06 -0.67 0.75 16 34 H 0.19 3.20 6.41 -2.91 -0.02 3.18 16 35 H 0.41 8.91 5.77 -92.71 -0.53 8.38 16 36 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 42 H 0.05 2.75 6.06 -2.39 -0.01 2.74 16 43 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 44 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 45 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 46 H 0.06 2.14 7.16 -2.39 -0.02 2.13 16 Total: -1.00 -76.80 374.03 -0.67 -77.47 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -0.18 Total: 15.23 kcal Atomic # 6 Polarization: 12.31 SS G_CDS: 6.52 Total: 18.82 kcal Atomic # 7 Polarization: -115.49 SS G_CDS: -7.50 Total: -122.99 kcal Atomic # 8 Polarization: -33.32 SS G_CDS: -1.54 Total: -34.86 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -76.80 -0.67 -77.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023596424.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.585 kcal (2) G-P(sol) polarization free energy of solvation -76.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds