Wall clock time and date at job start Tue Mar 31 2020 19:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35504 * 117.00293 * 2 1 4 4 C 1.39214 * 120.90115 * 0.25181 * 3 2 1 5 5 C 1.37895 * 119.39121 * 180.23117 * 4 3 2 6 6 N 1.32073 * 121.29291 * 359.76631 * 5 4 3 7 7 C 1.32184 * 121.97846 * 359.97438 * 6 5 4 8 8 O 1.35429 * 119.77726 * 180.02562 * 7 6 5 9 9 C 1.40290 * 120.44647 * 359.97438 * 7 6 5 10 10 C 1.47230 * 120.65853 * 179.97438 * 9 7 6 11 11 O 1.21623 * 119.99953 * 89.99781 * 10 9 7 12 12 N 1.34775 * 120.00095 * 270.00058 * 10 9 7 13 13 C 1.46493 * 120.00048 * 179.97438 * 12 10 9 14 14 C 1.53008 * 109.47240 * 180.02562 * 13 12 10 15 15 H 1.09002 * 109.52276 * 55.08474 * 14 13 12 16 16 C 1.53071 * 109.62164 * 175.10635 * 14 13 12 17 17 C 1.53039 * 109.65756 * 181.16888 * 16 14 13 18 18 C 1.53198 * 109.31324 * 298.70517 * 17 16 14 19 19 N 1.46917 * 108.77706 * 54.63380 * 18 17 16 20 20 C 1.36933 * 120.63328 * 126.41581 * 19 18 17 21 21 H 1.07995 * 119.99712 * 332.56573 * 20 19 18 22 22 C 1.38812 * 120.00222 * 152.56387 * 20 19 18 23 23 N 1.31625 * 120.00063 * 159.34836 * 22 20 19 24 24 Si 1.86800 * 120.00022 * 339.35463 * 22 20 19 25 25 H 1.48494 * 109.47321 * 92.89500 * 24 22 20 26 26 H 1.48501 * 109.47194 * 212.90079 * 24 22 20 27 27 H 1.48509 * 109.46983 * 332.89303 * 24 22 20 28 28 C 1.46931 * 118.73496 * 306.39247 * 19 18 17 29 29 H 1.09002 * 109.46791 * 59.99962 * 1 2 3 30 30 H 1.08997 * 109.47114 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47065 * 300.00261 * 1 2 3 32 32 H 1.08006 * 120.30202 * 0.02562 * 4 3 2 33 33 H 1.08002 * 119.35280 * 179.73592 * 5 4 3 34 34 H 0.96702 * 114.00048 * 269.97795 * 8 7 6 35 35 H 0.97001 * 119.99705 * 359.97438 * 12 10 9 36 36 H 1.09000 * 109.47210 * 60.00434 * 13 12 10 37 37 H 1.09005 * 109.47504 * 299.99847 * 13 12 10 38 38 H 1.09007 * 109.34642 * 61.14709 * 16 14 13 39 39 H 1.08998 * 109.44572 * 301.25248 * 16 14 13 40 40 H 1.08995 * 109.50085 * 178.74743 * 17 16 14 41 41 H 1.09003 * 109.49890 * 58.65335 * 17 16 14 42 42 H 1.09004 * 109.58224 * 294.84164 * 18 17 16 43 43 H 1.09005 * 109.70059 * 174.49322 * 18 17 16 44 44 H 0.97001 * 119.99891 * 179.97438 * 23 22 20 45 45 H 1.09007 * 109.58326 * 173.40228 * 28 19 18 46 46 H 1.09006 * 109.58740 * 293.67473 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 6 1.3045 2.3867 0.0052 5 6 1.9628 3.5984 0.0002 6 7 3.2819 3.6624 -0.0048 7 6 4.0355 2.5765 -0.0049 8 8 5.3847 2.6941 -0.0097 9 6 3.4472 1.3029 0.0011 10 6 4.2822 0.0902 0.0005 11 8 4.6318 -0.4079 1.0535 12 7 4.6591 -0.4679 -1.1669 13 6 5.4903 -1.6741 -1.1675 14 6 5.7735 -2.0977 -2.6103 15 1 6.2192 -1.2646 -3.1537 16 6 6.7404 -3.2843 -2.6172 17 6 7.0471 -3.6901 -4.0606 18 6 5.7496 -4.1197 -4.7527 19 7 4.7653 -3.0363 -4.6266 20 6 4.1409 -2.5284 -5.7345 21 1 4.6317 -2.5662 -6.6957 22 6 2.8773 -1.9651 -5.6220 23 7 2.4436 -1.1320 -6.5442 24 14 1.7922 -2.3891 -4.1617 25 1 1.9959 -1.3861 -3.0859 26 1 0.3685 -2.3801 -4.5838 27 1 2.1496 -3.7384 -3.6548 28 6 4.4631 -2.5085 -3.2891 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 0.2250 2.3529 0.0098 33 1 1.3883 4.5129 0.0000 34 1 5.7736 2.7259 -0.8945 35 1 4.3799 -0.0708 -2.0068 36 1 4.9660 -2.4769 -0.6491 37 1 6.4317 -1.4670 -0.6587 38 1 6.2850 -4.1244 -2.0928 39 1 7.6657 -3.0014 -2.1152 40 1 7.7529 -4.5206 -4.0630 41 1 7.4798 -2.8429 -4.5927 42 1 5.3634 -5.0215 -4.2776 43 1 5.9433 -4.3165 -5.8072 44 1 1.5604 -0.7387 -6.4658 45 1 3.8097 -1.6405 -3.3778 46 1 3.9696 -3.2781 -2.6954 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023705939.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:16 Heat of formation + Delta-G solvation = -52.009369 kcal Electronic energy + Delta-G solvation = -30230.737575 eV Core-core repulsion = 26122.028546 eV Total energy + Delta-G solvation = -4108.709030 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.24121 -39.33524 -38.97145 -37.99576 -36.97200 -34.80166 -33.14885 -32.21093 -31.12473 -30.76187 -30.38435 -27.82316 -26.14666 -25.34082 -24.30489 -23.06787 -22.52328 -21.04074 -20.69694 -19.51852 -19.33948 -17.91571 -17.68949 -17.35977 -16.85807 -16.32332 -15.80673 -15.61869 -15.47296 -15.03520 -14.77655 -14.68087 -14.17962 -13.97534 -13.79710 -13.36878 -13.30524 -13.26696 -12.91447 -12.86780 -12.39510 -12.11622 -12.04796 -11.87107 -11.77320 -11.64489 -11.49921 -10.83660 -10.64232 -10.57214 -10.31154 -10.17150 -9.96027 -9.74024 -9.62976 -9.50095 -9.28313 -9.17349 -8.92151 -8.68005 -7.03536 -6.02868 -3.38045 0.54126 0.93970 2.60916 2.64786 3.11430 3.23185 3.35021 3.39382 3.45240 3.52639 4.28197 4.44348 4.53886 4.67476 4.69231 4.79450 4.84102 4.88036 5.12992 5.16390 5.21748 5.22060 5.29146 5.33934 5.39769 5.58595 5.61131 5.77900 5.84011 5.94033 6.01607 6.08144 6.11199 6.27589 6.31345 6.48998 6.53168 6.56266 6.65556 6.69134 6.80677 6.93535 7.19664 7.56812 7.61742 7.89181 8.25682 8.26171 8.87288 9.64632 10.03560 11.12895 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011228 B = 0.004578 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2493.135738 B = 6115.280849 C = 7294.534514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.297 6.297 3 C 0.219 3.781 4 C -0.275 4.275 5 C 0.174 3.826 6 N -0.524 5.524 7 C 0.384 3.616 8 O -0.470 6.470 9 C -0.231 4.231 10 C 0.583 3.417 11 O -0.530 6.530 12 N -0.715 5.715 13 C 0.126 3.874 14 C -0.119 4.119 15 H 0.080 0.920 16 C -0.101 4.101 17 C -0.134 4.134 18 C 0.146 3.854 19 N -0.606 5.606 20 C -0.258 4.258 21 H 0.086 0.914 22 C 0.023 3.977 23 N -0.907 5.907 24 Si 0.878 3.122 25 H -0.285 1.285 26 H -0.305 1.305 27 H -0.272 1.272 28 C 0.134 3.866 29 H 0.065 0.935 30 H 0.108 0.892 31 H 0.063 0.937 32 H 0.150 0.850 33 H 0.169 0.831 34 H 0.408 0.592 35 H 0.404 0.596 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.062 0.938 42 H 0.022 0.978 43 H 0.062 0.938 44 H 0.262 0.738 45 H 0.069 0.931 46 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.603 5.414 11.842 13.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.207 6.207 3 C 0.164 3.836 4 C -0.296 4.296 5 C 0.018 3.982 6 N -0.246 5.246 7 C 0.204 3.796 8 O -0.278 6.278 9 C -0.239 4.239 10 C 0.367 3.633 11 O -0.406 6.406 12 N -0.366 5.366 13 C 0.002 3.998 14 C -0.139 4.139 15 H 0.098 0.902 16 C -0.139 4.139 17 C -0.173 4.173 18 C 0.020 3.980 19 N -0.329 5.329 20 C -0.386 4.386 21 H 0.104 0.896 22 C -0.176 4.176 23 N -0.550 5.550 24 Si 0.708 3.292 25 H -0.213 1.213 26 H -0.233 1.233 27 H -0.197 1.197 28 C 0.008 3.992 29 H 0.083 0.917 30 H 0.126 0.874 31 H 0.082 0.918 32 H 0.167 0.833 33 H 0.186 0.814 34 H 0.267 0.733 35 H 0.239 0.761 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.040 0.960 43 H 0.081 0.919 44 H 0.072 0.928 45 H 0.087 0.913 46 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -0.009 5.640 13.084 14.248 hybrid contribution -1.556 -0.639 -0.123 1.686 sum -1.565 5.001 12.962 13.981 Atomic orbital electron populations 1.23282 0.76836 1.05162 1.01937 1.86121 1.22636 1.25595 1.86319 1.19113 0.90315 0.85408 0.88801 1.22186 1.02076 0.92569 1.12735 1.22409 0.88622 0.97297 0.89845 1.67294 1.07272 1.31997 1.18046 1.18735 0.84693 0.85418 0.90726 1.84716 1.13792 1.95127 1.34184 1.20264 0.91812 0.95693 1.16105 1.17441 0.79109 0.82583 0.84137 1.90786 1.55496 1.63011 1.31318 1.46060 1.52966 1.29259 1.08311 1.21489 0.94393 0.86180 0.97693 1.21973 0.99316 0.99094 0.93564 0.90171 1.21347 0.97921 0.97219 0.97401 1.21981 0.98859 1.00709 0.95758 1.20964 0.88312 0.89879 0.98836 1.44351 1.47477 1.38518 1.02578 1.18951 0.97410 1.33611 0.88605 0.89606 1.25278 0.96902 0.98540 0.96861 1.69846 1.19520 1.29770 1.35906 0.87028 0.79977 0.79522 0.82668 1.21300 1.23292 1.19696 1.21358 0.93848 0.97416 0.86553 0.91676 0.87376 0.91837 0.83253 0.81376 0.73252 0.76079 0.91543 0.91354 0.92329 0.92666 0.92537 0.91928 0.96027 0.91918 0.92844 0.91270 0.95672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.84 101.05 0.99 1.21 16 2 O -0.30 -4.37 10.03 -18.20 -0.18 -4.55 16 3 C 0.22 3.10 6.74 -38.32 -0.26 2.84 16 4 C -0.27 -2.91 9.09 -39.34 -0.36 -3.27 16 5 C 0.17 1.80 11.15 -17.57 -0.20 1.61 16 6 N -0.52 -6.92 10.37 -13.06 -0.14 -7.06 16 7 C 0.38 5.47 7.77 -16.63 -0.13 5.34 16 8 O -0.47 -6.10 13.02 -17.98 -0.23 -6.33 16 9 C -0.23 -3.59 5.66 -104.57 -0.59 -4.18 16 10 C 0.58 10.14 6.42 -12.61 -0.08 10.06 16 11 O -0.53 -10.85 17.11 5.26 0.09 -10.76 16 12 N -0.71 -11.53 5.33 -61.45 -0.33 -11.85 16 13 C 0.13 1.97 5.08 -4.04 -0.02 1.95 16 14 C -0.12 -1.96 2.38 -90.48 -0.22 -2.17 16 15 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 16 C -0.10 -1.48 5.17 -26.67 -0.14 -1.62 16 17 C -0.13 -2.07 6.08 -26.61 -0.16 -2.23 16 18 C 0.15 2.77 6.52 -3.71 -0.02 2.74 16 19 N -0.61 -13.86 2.77 -172.32 -0.48 -14.33 16 20 C -0.26 -6.96 10.03 -15.06 -0.15 -7.11 16 21 H 0.09 2.48 8.06 -52.49 -0.42 2.06 16 22 C 0.02 0.64 5.23 -17.43 -0.09 0.55 16 23 N -0.91 -26.84 13.97 55.49 0.78 -26.07 16 24 Si 0.88 21.67 24.34 -169.99 -4.14 17.53 16 25 H -0.29 -6.69 6.62 56.52 0.37 -6.31 16 26 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 27 H -0.27 -6.78 6.64 56.52 0.38 -6.41 16 28 C 0.13 2.78 3.29 -3.71 -0.01 2.77 16 29 H 0.06 0.56 7.72 -51.93 -0.40 0.16 16 30 H 0.11 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.06 0.45 7.70 -51.93 -0.40 0.05 16 32 H 0.15 1.08 6.45 -52.48 -0.34 0.75 16 33 H 0.17 1.08 8.06 -52.49 -0.42 0.65 16 34 H 0.41 3.33 9.06 45.56 0.41 3.75 16 35 H 0.40 6.39 7.68 -40.82 -0.31 6.08 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 44 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 45 H 0.07 1.55 3.70 -51.92 -0.19 1.36 16 46 H 0.03 0.55 7.07 -51.93 -0.37 0.18 16 LS Contribution 372.74 15.07 5.62 5.62 Total: -1.00 -35.91 372.74 -6.30 -42.21 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -5.85 Total: 7.10 kcal Atomic # 6 Polarization: 9.94 SS G_CDS: -1.43 Total: 8.50 kcal Atomic # 7 Polarization: -59.15 SS G_CDS: -0.17 Total: -59.31 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: -0.33 Total: -21.64 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.14 Total: 17.53 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.91 -6.30 -42.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023705939.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.804 kcal (2) G-P(sol) polarization free energy of solvation -35.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds