Wall clock time and date at job start Tue Mar 31 2020 19:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35504 * 117.00293 * 2 1 4 4 C 1.39214 * 120.90115 * 0.25181 * 3 2 1 5 5 C 1.37895 * 119.39121 * 180.23117 * 4 3 2 6 6 N 1.32073 * 121.29291 * 359.76631 * 5 4 3 7 7 C 1.32184 * 121.97846 * 359.97438 * 6 5 4 8 8 O 1.35429 * 119.77726 * 180.02562 * 7 6 5 9 9 C 1.40290 * 120.44647 * 359.97438 * 7 6 5 10 10 C 1.47230 * 120.65853 * 179.97438 * 9 7 6 11 11 O 1.21623 * 119.99953 * 89.99781 * 10 9 7 12 12 N 1.34775 * 120.00095 * 270.00058 * 10 9 7 13 13 C 1.46493 * 120.00048 * 179.97438 * 12 10 9 14 14 C 1.53008 * 109.47240 * 180.02562 * 13 12 10 15 15 H 1.09002 * 109.52276 * 55.08474 * 14 13 12 16 16 C 1.53071 * 109.62164 * 175.10635 * 14 13 12 17 17 C 1.53039 * 109.65756 * 181.16888 * 16 14 13 18 18 C 1.53198 * 109.31324 * 298.70517 * 17 16 14 19 19 N 1.46917 * 108.77706 * 54.63380 * 18 17 16 20 20 C 1.36933 * 120.63328 * 126.41581 * 19 18 17 21 21 H 1.07995 * 119.99712 * 332.56573 * 20 19 18 22 22 C 1.38812 * 120.00222 * 152.56387 * 20 19 18 23 23 N 1.31625 * 120.00063 * 159.34836 * 22 20 19 24 24 Si 1.86800 * 120.00022 * 339.35463 * 22 20 19 25 25 H 1.48494 * 109.47321 * 92.89500 * 24 22 20 26 26 H 1.48501 * 109.47194 * 212.90079 * 24 22 20 27 27 H 1.48509 * 109.46983 * 332.89303 * 24 22 20 28 28 C 1.46931 * 118.73496 * 306.39247 * 19 18 17 29 29 H 1.09002 * 109.46791 * 59.99962 * 1 2 3 30 30 H 1.08997 * 109.47114 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47065 * 300.00261 * 1 2 3 32 32 H 1.08006 * 120.30202 * 0.02562 * 4 3 2 33 33 H 1.08002 * 119.35280 * 179.73592 * 5 4 3 34 34 H 0.96702 * 114.00048 * 269.97795 * 8 7 6 35 35 H 0.97001 * 119.99705 * 359.97438 * 12 10 9 36 36 H 1.09000 * 109.47210 * 60.00434 * 13 12 10 37 37 H 1.09005 * 109.47504 * 299.99847 * 13 12 10 38 38 H 1.09007 * 109.34642 * 61.14709 * 16 14 13 39 39 H 1.08998 * 109.44572 * 301.25248 * 16 14 13 40 40 H 1.08995 * 109.50085 * 178.74743 * 17 16 14 41 41 H 1.09003 * 109.49890 * 58.65335 * 17 16 14 42 42 H 1.09004 * 109.58224 * 294.84164 * 18 17 16 43 43 H 1.09005 * 109.70059 * 174.49322 * 18 17 16 44 44 H 0.97001 * 119.99891 * 179.97438 * 23 22 20 45 45 H 1.09007 * 109.58326 * 173.40228 * 28 19 18 46 46 H 1.09006 * 109.58740 * 293.67473 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 6 1.3045 2.3867 0.0052 5 6 1.9628 3.5984 0.0002 6 7 3.2819 3.6624 -0.0048 7 6 4.0355 2.5765 -0.0049 8 8 5.3847 2.6941 -0.0097 9 6 3.4472 1.3029 0.0011 10 6 4.2822 0.0902 0.0005 11 8 4.6318 -0.4079 1.0535 12 7 4.6591 -0.4679 -1.1669 13 6 5.4903 -1.6741 -1.1675 14 6 5.7735 -2.0977 -2.6103 15 1 6.2192 -1.2646 -3.1537 16 6 6.7404 -3.2843 -2.6172 17 6 7.0471 -3.6901 -4.0606 18 6 5.7496 -4.1197 -4.7527 19 7 4.7653 -3.0363 -4.6266 20 6 4.1409 -2.5284 -5.7345 21 1 4.6317 -2.5662 -6.6957 22 6 2.8773 -1.9651 -5.6220 23 7 2.4436 -1.1320 -6.5442 24 14 1.7922 -2.3891 -4.1617 25 1 1.9959 -1.3861 -3.0859 26 1 0.3685 -2.3801 -4.5838 27 1 2.1496 -3.7384 -3.6548 28 6 4.4631 -2.5085 -3.2891 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 0.2250 2.3529 0.0098 33 1 1.3883 4.5129 0.0000 34 1 5.7736 2.7259 -0.8945 35 1 4.3799 -0.0708 -2.0068 36 1 4.9660 -2.4769 -0.6491 37 1 6.4317 -1.4670 -0.6587 38 1 6.2850 -4.1244 -2.0928 39 1 7.6657 -3.0014 -2.1152 40 1 7.7529 -4.5206 -4.0630 41 1 7.4798 -2.8429 -4.5927 42 1 5.3634 -5.0215 -4.2776 43 1 5.9433 -4.3165 -5.8072 44 1 1.5604 -0.7387 -6.4658 45 1 3.8097 -1.6405 -3.3778 46 1 3.9696 -3.2781 -2.6954 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023705939.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:15 Heat of formation + Delta-G solvation = -82.951395 kcal Electronic energy + Delta-G solvation = -30232.079322 eV Core-core repulsion = 26122.028546 eV Total energy + Delta-G solvation = -4110.050776 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.23224 -40.59887 -39.95509 -39.46812 -37.90614 -36.28907 -34.86654 -33.36981 -32.71808 -32.06252 -31.53341 -28.60631 -27.48538 -27.13601 -25.40896 -24.11552 -23.98882 -22.49854 -21.96930 -20.90470 -20.35125 -19.03849 -18.79424 -18.69610 -18.33288 -17.45041 -17.30474 -16.90155 -16.43586 -16.26182 -15.94551 -15.75161 -15.69067 -15.42249 -15.04308 -14.97401 -14.75064 -14.50764 -14.22354 -13.97246 -13.79769 -13.55304 -13.38205 -13.09874 -12.99456 -12.66119 -12.60554 -12.58584 -12.22026 -12.11379 -11.71792 -11.65415 -11.56146 -11.30800 -11.25751 -10.69956 -10.64908 -10.24835 -10.22783 -10.12756 -8.93950 -8.18765 -5.49519 -0.38078 -0.00547 1.25121 1.32478 1.35859 1.44649 1.78773 2.00754 2.36556 2.37646 2.61701 3.01431 3.29973 3.40141 3.65518 3.70927 3.80653 3.83007 3.90428 3.95953 4.16613 4.23971 4.26938 4.29728 4.41312 4.44401 4.47499 4.57845 4.60618 4.69842 4.74565 4.77106 4.86807 4.96986 5.09195 5.15443 5.17376 5.22628 5.29280 5.33979 5.58141 5.85741 5.94439 6.11625 6.26010 6.38715 6.71649 6.90212 6.96344 7.60803 8.02380 9.00979 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011228 B = 0.004578 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2493.135738 B = 6115.280849 C = 7294.534514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.331 6.331 3 C 0.202 3.798 4 C -0.263 4.263 5 C 0.179 3.821 6 N -0.540 5.540 7 C 0.379 3.621 8 O -0.482 6.482 9 C -0.263 4.263 10 C 0.587 3.413 11 O -0.569 6.569 12 N -0.711 5.711 13 C 0.131 3.869 14 C -0.105 4.105 15 H 0.078 0.922 16 C -0.099 4.099 17 C -0.124 4.124 18 C 0.137 3.863 19 N -0.620 5.620 20 C -0.247 4.247 21 H 0.055 0.945 22 C -0.028 4.028 23 N -0.952 5.952 24 Si 0.940 3.060 25 H -0.270 1.270 26 H -0.311 1.311 27 H -0.276 1.276 28 C 0.133 3.867 29 H 0.076 0.924 30 H 0.113 0.887 31 H 0.091 0.909 32 H 0.187 0.813 33 H 0.213 0.787 34 H 0.424 0.576 35 H 0.405 0.595 36 H 0.059 0.941 37 H 0.085 0.915 38 H 0.064 0.936 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.055 0.945 42 H 0.030 0.970 43 H 0.054 0.946 44 H 0.261 0.739 45 H 0.049 0.951 46 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.731 5.843 13.529 14.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.241 6.241 3 C 0.147 3.853 4 C -0.284 4.284 5 C 0.024 3.976 6 N -0.263 5.263 7 C 0.199 3.801 8 O -0.293 6.293 9 C -0.271 4.271 10 C 0.372 3.628 11 O -0.449 6.449 12 N -0.361 5.361 13 C 0.008 3.992 14 C -0.125 4.125 15 H 0.096 0.904 16 C -0.137 4.137 17 C -0.162 4.162 18 C 0.012 3.988 19 N -0.344 5.344 20 C -0.376 4.376 21 H 0.073 0.927 22 C -0.223 4.223 23 N -0.598 5.598 24 Si 0.769 3.231 25 H -0.197 1.197 26 H -0.240 1.240 27 H -0.201 1.201 28 C 0.008 3.992 29 H 0.094 0.906 30 H 0.132 0.868 31 H 0.109 0.891 32 H 0.204 0.796 33 H 0.230 0.770 34 H 0.286 0.714 35 H 0.240 0.760 36 H 0.077 0.923 37 H 0.103 0.897 38 H 0.083 0.917 39 H 0.105 0.895 40 H 0.108 0.892 41 H 0.074 0.926 42 H 0.048 0.952 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.067 0.933 46 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -0.108 6.052 14.770 15.963 hybrid contribution -1.505 -0.793 -0.719 1.847 sum -1.613 5.259 14.051 15.089 Atomic orbital electron populations 1.23619 0.74643 1.06295 1.03823 1.86068 1.25113 1.26444 1.86507 1.19411 0.90145 0.86467 0.89310 1.22577 1.03716 0.91191 1.10883 1.23212 0.87898 0.98953 0.87520 1.67404 1.08667 1.31403 1.18778 1.18818 0.85062 0.85387 0.90819 1.84660 1.13712 1.95108 1.35824 1.20305 0.92653 0.95212 1.18957 1.17741 0.78589 0.82860 0.83594 1.90745 1.57189 1.64424 1.32505 1.46098 1.52676 1.29205 1.08169 1.21471 0.94959 0.85851 0.96967 1.21798 0.97343 0.99960 0.93405 0.90383 1.21386 0.98720 0.96391 0.97176 1.21880 0.97140 1.01632 0.95589 1.21194 0.89213 0.89158 0.99215 1.44500 1.47930 1.39816 1.02189 1.18900 0.97309 1.32436 0.88992 0.92733 1.25794 0.98114 0.98911 0.99487 1.69958 1.19952 1.31573 1.38289 0.86023 0.77651 0.79179 0.80197 1.19656 1.23954 1.20101 1.21334 0.95876 0.96293 0.85728 0.90561 0.86832 0.89095 0.79626 0.77037 0.71365 0.75986 0.92291 0.89702 0.91707 0.89531 0.89193 0.92647 0.95183 0.92720 0.92942 0.93285 0.96228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.84 113.37 1.12 1.28 16 2 O -0.33 -9.41 10.03 -88.05 -0.88 -10.29 16 3 C 0.20 5.48 6.74 23.09 0.16 5.64 16 4 C -0.26 -4.83 9.09 22.42 0.20 -4.63 16 5 C 0.18 3.16 11.15 84.58 0.94 4.11 16 6 N -0.54 -13.36 10.37 -308.28 -3.20 -16.56 16 7 C 0.38 10.60 7.77 85.14 0.66 11.26 16 8 O -0.48 -12.41 13.02 -87.25 -1.14 -13.55 16 9 C -0.26 -8.13 5.66 -19.83 -0.11 -8.24 16 10 C 0.59 20.47 6.42 86.61 0.56 21.02 16 11 O -0.57 -23.55 17.11 -4.10 -0.07 -23.62 16 12 N -0.71 -22.71 5.33 -466.56 -2.49 -25.19 16 13 C 0.13 3.92 5.08 86.38 0.44 4.36 16 14 C -0.10 -3.28 2.38 -10.71 -0.03 -3.30 16 15 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 16 C -0.10 -2.58 5.17 30.63 0.16 -2.42 16 17 C -0.12 -3.47 6.08 30.67 0.19 -3.29 16 18 C 0.14 5.03 6.52 86.37 0.56 5.60 16 19 N -0.62 -28.24 2.77 -699.09 -1.94 -30.17 16 20 C -0.25 -13.62 10.03 84.03 0.84 -12.78 16 21 H 0.05 3.29 8.06 -2.91 -0.02 3.27 16 22 C -0.03 -1.59 5.23 84.86 0.44 -1.15 16 23 N -0.95 -57.79 13.97 21.65 0.30 -57.49 16 24 Si 0.94 45.72 24.34 68.60 1.67 47.39 16 25 H -0.27 -12.30 6.62 99.48 0.66 -11.64 16 26 H -0.31 -15.28 7.11 99.48 0.71 -14.58 16 27 H -0.28 -13.41 6.64 99.48 0.66 -12.75 16 28 C 0.13 5.41 3.29 86.36 0.28 5.70 16 29 H 0.08 1.11 7.72 -2.39 -0.02 1.09 16 30 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.09 1.01 7.70 -2.39 -0.02 0.99 16 32 H 0.19 1.90 6.45 -2.91 -0.02 1.88 16 33 H 0.21 1.72 8.06 -2.91 -0.02 1.70 16 34 H 0.42 6.88 9.06 -74.06 -0.67 6.21 16 35 H 0.40 12.81 7.68 -92.71 -0.71 12.10 16 36 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 38 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 39 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 43 H 0.05 2.06 7.93 -2.38 -0.02 2.04 16 44 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 45 H 0.05 2.19 3.70 -2.38 -0.01 2.18 16 46 H 0.02 0.83 7.07 -2.38 -0.02 0.81 16 Total: -1.00 -80.51 372.74 -1.77 -82.28 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: -0.45 Total: 24.04 kcal Atomic # 6 Polarization: 16.74 SS G_CDS: 6.41 Total: 23.15 kcal Atomic # 7 Polarization: -122.09 SS G_CDS: -7.32 Total: -129.41 kcal Atomic # 8 Polarization: -45.36 SS G_CDS: -2.09 Total: -47.45 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 1.67 Total: 47.39 kcal Total: -80.51 -1.77 -82.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023705939.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.674 kcal (2) G-P(sol) polarization free energy of solvation -80.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds