Wall clock time and date at job start Tue Mar 31 2020 19:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35515 * 116.99784 * 2 1 4 4 C 1.39210 * 120.89625 * 0.02562 * 3 2 1 5 5 C 1.37913 * 119.38582 * 179.74273 * 4 3 2 6 6 N 1.32072 * 121.28641 * 0.23176 * 5 4 3 7 7 C 1.32178 * 121.98833 * 0.02562 * 6 5 4 8 8 O 1.35428 * 119.78379 * 180.02562 * 7 6 5 9 9 C 1.40300 * 120.43909 * 0.02562 * 7 6 5 10 10 C 1.47231 * 120.64945 * 180.02562 * 9 7 6 11 11 O 1.21624 * 120.00271 * 89.99263 * 10 9 7 12 12 N 1.34782 * 119.99719 * 269.99255 * 10 9 7 13 13 C 1.46499 * 119.99780 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.46724 * 180.02562 * 13 12 10 15 15 H 1.09003 * 109.49522 * 305.06621 * 14 13 12 16 16 C 1.53044 * 109.49653 * 185.00049 * 14 13 12 17 17 C 1.53034 * 109.53793 * 178.68143 * 16 14 13 18 18 C 1.53187 * 109.31258 * 61.36764 * 17 16 14 19 19 N 1.46927 * 108.77519 * 305.36418 * 18 17 16 20 20 C 1.36938 * 120.63139 * 233.58357 * 19 18 17 21 21 H 1.07994 * 120.00052 * 151.82917 * 20 19 18 22 22 C 1.38808 * 120.00073 * 331.83663 * 20 19 18 23 23 N 1.31629 * 119.99864 * 343.07349 * 22 20 19 24 24 Si 1.86797 * 120.00169 * 163.07621 * 22 20 19 25 25 H 1.48503 * 109.47381 * 89.99869 * 24 22 20 26 26 H 1.48497 * 109.47373 * 209.99666 * 24 22 20 27 27 H 1.48492 * 109.47300 * 329.99947 * 24 22 20 28 28 C 1.46923 * 118.73805 * 53.60912 * 19 18 17 29 29 H 1.09001 * 109.47222 * 60.00296 * 1 2 3 30 30 H 1.08998 * 109.47067 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47462 * 299.99853 * 1 2 3 32 32 H 1.08002 * 120.31117 * 0.02562 * 4 3 2 33 33 H 1.07995 * 119.34942 * 180.25308 * 5 4 3 34 34 H 0.96695 * 113.99742 * 89.99981 * 8 7 6 35 35 H 0.97005 * 119.99601 * 0.02562 * 12 10 9 36 36 H 1.08999 * 109.47374 * 299.99762 * 13 12 10 37 37 H 1.09002 * 109.46874 * 60.00495 * 13 12 10 38 38 H 1.09005 * 109.46040 * 298.70910 * 16 14 13 39 39 H 1.09010 * 109.45726 * 58.67576 * 16 14 13 40 40 H 1.09005 * 109.49834 * 181.31756 * 17 16 14 41 41 H 1.09000 * 109.50219 * 301.38064 * 17 16 14 42 42 H 1.09006 * 109.58794 * 65.15074 * 18 17 16 43 43 H 1.08997 * 109.58984 * 185.57752 * 18 17 16 44 44 H 0.96997 * 119.99442 * 180.02562 * 23 22 20 45 45 H 1.09001 * 109.58633 * 186.60323 * 28 19 18 46 46 H 1.08998 * 109.59034 * 66.18115 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2075 0.0000 4 6 1.3043 2.3867 0.0005 5 6 1.9625 3.5986 0.0059 6 7 3.2817 3.6626 0.0060 7 6 4.0354 2.5768 0.0005 8 8 5.3846 2.6944 0.0014 9 6 3.4470 1.3031 -0.0063 10 6 4.2822 0.0906 -0.0119 11 8 4.6266 -0.4155 1.0391 12 7 4.6650 -0.4586 -1.1817 13 6 5.4955 -1.6654 -1.1873 14 6 5.7860 -2.0777 -2.6318 15 1 4.8470 -2.1930 -3.1731 16 6 6.5471 -3.4055 -2.6407 17 6 6.8095 -3.8353 -4.0859 18 6 7.6738 -2.7780 -4.7799 19 7 7.0171 -1.4702 -4.6491 20 6 6.7629 -0.7034 -5.7549 21 1 5.9306 -0.0152 -5.7550 22 6 7.5749 -0.8108 -6.8755 23 7 8.7591 -1.3771 -6.7784 24 14 6.9870 -0.1515 -8.5215 25 1 7.4021 1.2672 -8.6633 26 1 7.5852 -0.9542 -9.6184 27 1 5.5066 -0.2435 -8.5914 28 6 6.6388 -1.0005 -3.3094 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 0.2248 2.3528 0.0014 33 1 1.3879 4.5130 0.0105 34 1 5.7762 2.7240 0.8850 35 1 4.3905 -0.0547 -2.0199 36 1 6.4343 -1.4628 -0.6719 37 1 4.9679 -2.4719 -0.6780 38 1 7.4969 -3.2832 -2.1200 39 1 5.9527 -4.1682 -2.1374 40 1 7.3309 -4.7925 -4.0918 41 1 5.8611 -3.9345 -4.6139 42 1 8.6561 -2.7423 -4.3089 43 1 7.7811 -3.0290 -5.8352 44 1 9.3266 -1.4518 -7.5615 45 1 6.0632 -0.0787 -3.3943 46 1 7.5366 -0.8199 -2.7184 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023705940.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:20 Heat of formation + Delta-G solvation = -57.073097 kcal Electronic energy + Delta-G solvation = -29385.643354 eV Core-core repulsion = 25276.714744 eV Total energy + Delta-G solvation = -4108.928609 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.32708 -39.35547 -39.02368 -37.70347 -37.01098 -34.75795 -33.02310 -32.18995 -30.94591 -30.41446 -30.10429 -27.96353 -25.92239 -25.25709 -24.20411 -23.15220 -22.09704 -21.08637 -20.62447 -19.51551 -19.09137 -17.98232 -17.80505 -17.30030 -16.61494 -16.45372 -15.85678 -15.54070 -15.17396 -14.96466 -14.84184 -14.74563 -14.08706 -13.82240 -13.64468 -13.41161 -13.38843 -12.98341 -12.75318 -12.32556 -12.17877 -12.14437 -12.07739 -12.00992 -11.88095 -11.26622 -11.00269 -10.69454 -10.48203 -10.39843 -10.21369 -10.15345 -9.90624 -9.73442 -9.50091 -9.40111 -9.37787 -9.28998 -8.89519 -8.44658 -6.64530 -5.77307 -3.19932 0.45669 0.83921 2.51237 2.56237 3.09584 3.22241 3.38064 3.44948 3.46847 3.55613 4.17854 4.44796 4.49773 4.57274 4.60654 4.68666 4.72492 5.03557 5.07336 5.17267 5.23789 5.32853 5.46334 5.48868 5.50755 5.64740 5.84797 5.86068 5.97465 6.02775 6.26630 6.35278 6.39937 6.52820 6.62407 6.66626 6.72338 6.80890 6.88181 7.00098 7.18222 7.41817 7.54063 7.59294 7.69128 7.80548 8.23197 8.46640 9.22962 9.86366 10.43412 11.31130 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012038 B = 0.003146 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2325.438153 B = 8897.077711 C = 9716.310410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.299 6.299 3 C 0.216 3.784 4 C -0.276 4.276 5 C 0.174 3.826 6 N -0.523 5.523 7 C 0.387 3.613 8 O -0.468 6.468 9 C -0.230 4.230 10 C 0.583 3.417 11 O -0.539 6.539 12 N -0.706 5.706 13 C 0.128 3.872 14 C -0.117 4.117 15 H 0.072 0.928 16 C -0.099 4.099 17 C -0.141 4.141 18 C 0.169 3.831 19 N -0.591 5.591 20 C -0.253 4.253 21 H 0.064 0.936 22 C 0.003 3.997 23 N -0.902 5.902 24 Si 0.901 3.099 25 H -0.287 1.287 26 H -0.290 1.290 27 H -0.280 1.280 28 C 0.154 3.846 29 H 0.063 0.937 30 H 0.107 0.893 31 H 0.062 0.938 32 H 0.149 0.851 33 H 0.168 0.832 34 H 0.410 0.590 35 H 0.404 0.596 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.047 0.953 40 H 0.049 0.951 41 H 0.053 0.947 42 H 0.017 0.983 43 H 0.086 0.914 44 H 0.253 0.747 45 H 0.050 0.950 46 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.885 4.073 15.276 23.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.209 6.209 3 C 0.161 3.839 4 C -0.297 4.297 5 C 0.018 3.982 6 N -0.245 5.245 7 C 0.207 3.793 8 O -0.276 6.276 9 C -0.238 4.238 10 C 0.367 3.633 11 O -0.417 6.417 12 N -0.356 5.356 13 C 0.004 3.996 14 C -0.138 4.138 15 H 0.091 0.909 16 C -0.137 4.137 17 C -0.181 4.181 18 C 0.044 3.956 19 N -0.314 5.314 20 C -0.383 4.383 21 H 0.082 0.918 22 C -0.195 4.195 23 N -0.546 5.546 24 Si 0.730 3.270 25 H -0.214 1.214 26 H -0.216 1.216 27 H -0.205 1.205 28 C 0.027 3.973 29 H 0.082 0.918 30 H 0.126 0.874 31 H 0.080 0.920 32 H 0.166 0.834 33 H 0.185 0.815 34 H 0.270 0.730 35 H 0.239 0.761 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.036 0.964 43 H 0.104 0.896 44 H 0.063 0.937 45 H 0.069 0.931 46 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -16.009 4.200 15.272 22.521 hybrid contribution -0.942 -0.101 -0.853 1.275 sum -16.952 4.100 14.419 22.629 Atomic orbital electron populations 1.23249 0.76946 1.04969 1.01914 1.86108 1.22492 1.25674 1.86625 1.19073 0.90248 0.85261 0.89305 1.22167 1.01946 0.92597 1.13035 1.22428 0.88668 0.97320 0.89809 1.67316 1.07262 1.32140 1.17811 1.18818 0.84899 0.85379 0.90195 1.84723 1.13533 1.95059 1.34315 1.20349 0.91814 0.95704 1.15915 1.17430 0.79171 0.82460 0.84238 1.90792 1.56482 1.62862 1.31540 1.46011 1.52290 1.29096 1.08193 1.21512 0.94355 0.85677 0.98050 1.21957 1.00552 0.98109 0.93193 0.90919 1.21340 0.99344 0.95138 0.97897 1.22170 1.01210 0.99325 0.95363 1.20792 0.91572 0.82731 1.00539 1.44037 1.70028 1.16568 1.00733 1.19147 1.07909 1.19496 0.91718 0.91832 1.25033 0.94763 1.00370 0.99378 1.70042 1.07850 1.48011 1.28702 0.86326 0.78258 0.78401 0.83968 1.21373 1.21556 1.20547 1.20897 0.95313 0.93649 0.87416 0.91819 0.87434 0.91970 0.83355 0.81463 0.73016 0.76100 0.91352 0.91834 0.92428 0.93454 0.93194 0.92795 0.96442 0.89595 0.93655 0.93149 0.96248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.84 101.05 0.99 1.13 16 2 O -0.30 -3.25 10.03 -18.24 -0.18 -3.43 16 3 C 0.22 2.43 6.74 -38.32 -0.26 2.17 16 4 C -0.28 -2.24 9.09 -39.34 -0.36 -2.60 16 5 C 0.17 1.50 11.15 -17.57 -0.20 1.30 16 6 N -0.52 -6.26 10.37 -13.06 -0.14 -6.40 16 7 C 0.39 5.04 7.77 -16.63 -0.13 4.91 16 8 O -0.47 -5.95 13.02 -17.98 -0.23 -6.18 16 9 C -0.23 -3.09 5.66 -104.57 -0.59 -3.69 16 10 C 0.58 9.11 6.42 -12.60 -0.08 9.03 16 11 O -0.54 -9.92 17.11 5.26 0.09 -9.83 16 12 N -0.71 -10.59 5.33 -61.44 -0.33 -10.92 16 13 C 0.13 1.96 5.07 -4.04 -0.02 1.94 16 14 C -0.12 -2.00 2.37 -90.50 -0.21 -2.21 16 15 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 16 C -0.10 -1.66 5.17 -26.69 -0.14 -1.79 16 17 C -0.14 -2.69 6.08 -26.62 -0.16 -2.85 16 18 C 0.17 4.05 5.30 -3.71 -0.02 4.03 16 19 N -0.59 -14.80 2.99 -172.33 -0.52 -15.32 16 20 C -0.25 -6.96 9.58 -15.06 -0.14 -7.10 16 21 H 0.06 1.71 7.88 -52.49 -0.41 1.30 16 22 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 23 N -0.90 -26.30 11.20 55.49 0.62 -25.68 16 24 Si 0.90 21.74 29.59 -169.99 -5.03 16.71 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 28 C 0.15 3.21 5.60 -3.71 -0.02 3.19 16 29 H 0.06 0.27 7.71 -51.93 -0.40 -0.13 16 30 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.25 7.71 -51.93 -0.40 -0.15 16 32 H 0.15 0.69 6.45 -52.49 -0.34 0.35 16 33 H 0.17 0.82 8.06 -52.49 -0.42 0.39 16 34 H 0.41 3.37 9.06 45.56 0.41 3.78 16 35 H 0.40 5.83 7.69 -40.82 -0.31 5.52 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 40 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.09 2.30 6.06 -51.93 -0.31 1.98 16 44 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 45 H 0.05 1.03 7.14 -51.93 -0.37 0.66 16 46 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 379.20 15.07 5.71 5.71 Total: -1.00 -35.37 379.20 -7.35 -42.72 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -5.93 Total: 5.15 kcal Atomic # 6 Polarization: 8.89 SS G_CDS: -1.43 Total: 7.46 kcal Atomic # 7 Polarization: -57.96 SS G_CDS: -0.36 Total: -58.32 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.33 Total: -19.44 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.71 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.37 -7.35 -42.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023705940.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.349 kcal (2) G-P(sol) polarization free energy of solvation -35.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds