Wall clock time and date at job start Tue Mar 31 2020 19:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35515 * 116.99784 * 2 1 4 4 C 1.39210 * 120.89625 * 0.02562 * 3 2 1 5 5 C 1.37913 * 119.38582 * 179.74273 * 4 3 2 6 6 N 1.32072 * 121.28641 * 0.23176 * 5 4 3 7 7 C 1.32178 * 121.98833 * 0.02562 * 6 5 4 8 8 O 1.35428 * 119.78379 * 180.02562 * 7 6 5 9 9 C 1.40300 * 120.43909 * 0.02562 * 7 6 5 10 10 C 1.47231 * 120.64945 * 180.02562 * 9 7 6 11 11 O 1.21624 * 120.00271 * 89.99263 * 10 9 7 12 12 N 1.34782 * 119.99719 * 269.99255 * 10 9 7 13 13 C 1.46499 * 119.99780 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.46724 * 180.02562 * 13 12 10 15 15 H 1.09003 * 109.49522 * 305.06621 * 14 13 12 16 16 C 1.53044 * 109.49653 * 185.00049 * 14 13 12 17 17 C 1.53034 * 109.53793 * 178.68143 * 16 14 13 18 18 C 1.53187 * 109.31258 * 61.36764 * 17 16 14 19 19 N 1.46927 * 108.77519 * 305.36418 * 18 17 16 20 20 C 1.36938 * 120.63139 * 233.58357 * 19 18 17 21 21 H 1.07994 * 120.00052 * 151.82917 * 20 19 18 22 22 C 1.38808 * 120.00073 * 331.83663 * 20 19 18 23 23 N 1.31629 * 119.99864 * 343.07349 * 22 20 19 24 24 Si 1.86797 * 120.00169 * 163.07621 * 22 20 19 25 25 H 1.48503 * 109.47381 * 89.99869 * 24 22 20 26 26 H 1.48497 * 109.47373 * 209.99666 * 24 22 20 27 27 H 1.48492 * 109.47300 * 329.99947 * 24 22 20 28 28 C 1.46923 * 118.73805 * 53.60912 * 19 18 17 29 29 H 1.09001 * 109.47222 * 60.00296 * 1 2 3 30 30 H 1.08998 * 109.47067 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47462 * 299.99853 * 1 2 3 32 32 H 1.08002 * 120.31117 * 0.02562 * 4 3 2 33 33 H 1.07995 * 119.34942 * 180.25308 * 5 4 3 34 34 H 0.96695 * 113.99742 * 89.99981 * 8 7 6 35 35 H 0.97005 * 119.99601 * 0.02562 * 12 10 9 36 36 H 1.08999 * 109.47374 * 299.99762 * 13 12 10 37 37 H 1.09002 * 109.46874 * 60.00495 * 13 12 10 38 38 H 1.09005 * 109.46040 * 298.70910 * 16 14 13 39 39 H 1.09010 * 109.45726 * 58.67576 * 16 14 13 40 40 H 1.09005 * 109.49834 * 181.31756 * 17 16 14 41 41 H 1.09000 * 109.50219 * 301.38064 * 17 16 14 42 42 H 1.09006 * 109.58794 * 65.15074 * 18 17 16 43 43 H 1.08997 * 109.58984 * 185.57752 * 18 17 16 44 44 H 0.96997 * 119.99442 * 180.02562 * 23 22 20 45 45 H 1.09001 * 109.58633 * 186.60323 * 28 19 18 46 46 H 1.08998 * 109.59034 * 66.18115 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2075 0.0000 4 6 1.3043 2.3867 0.0005 5 6 1.9625 3.5986 0.0059 6 7 3.2817 3.6626 0.0060 7 6 4.0354 2.5768 0.0005 8 8 5.3846 2.6944 0.0014 9 6 3.4470 1.3031 -0.0063 10 6 4.2822 0.0906 -0.0119 11 8 4.6266 -0.4155 1.0391 12 7 4.6650 -0.4586 -1.1817 13 6 5.4955 -1.6654 -1.1873 14 6 5.7860 -2.0777 -2.6318 15 1 4.8470 -2.1930 -3.1731 16 6 6.5471 -3.4055 -2.6407 17 6 6.8095 -3.8353 -4.0859 18 6 7.6738 -2.7780 -4.7799 19 7 7.0171 -1.4702 -4.6491 20 6 6.7629 -0.7034 -5.7549 21 1 5.9306 -0.0152 -5.7550 22 6 7.5749 -0.8108 -6.8755 23 7 8.7591 -1.3771 -6.7784 24 14 6.9870 -0.1515 -8.5215 25 1 7.4021 1.2672 -8.6633 26 1 7.5852 -0.9542 -9.6184 27 1 5.5066 -0.2435 -8.5914 28 6 6.6388 -1.0005 -3.3094 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 0.2248 2.3528 0.0014 33 1 1.3879 4.5130 0.0105 34 1 5.7762 2.7240 0.8850 35 1 4.3905 -0.0547 -2.0199 36 1 6.4343 -1.4628 -0.6719 37 1 4.9679 -2.4719 -0.6780 38 1 7.4969 -3.2832 -2.1200 39 1 5.9527 -4.1682 -2.1374 40 1 7.3309 -4.7925 -4.0918 41 1 5.8611 -3.9345 -4.6139 42 1 8.6561 -2.7423 -4.3089 43 1 7.7811 -3.0290 -5.8352 44 1 9.3266 -1.4518 -7.5615 45 1 6.0632 -0.0787 -3.3943 46 1 7.5366 -0.8199 -2.7184 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023705940.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:19 Heat of formation + Delta-G solvation = -86.176833 kcal Electronic energy + Delta-G solvation = -29386.905386 eV Core-core repulsion = 25276.714744 eV Total energy + Delta-G solvation = -4110.190642 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.16326 -40.48545 -39.86553 -39.27051 -37.85106 -36.28287 -34.70716 -33.15018 -32.30913 -31.93207 -31.38755 -28.47924 -27.35155 -27.07221 -25.24767 -23.92749 -23.82803 -22.61948 -21.83315 -20.73550 -20.26195 -19.00882 -18.68763 -18.53775 -18.13462 -17.38283 -16.85233 -16.79054 -16.40108 -16.26488 -15.91573 -15.69615 -15.54187 -15.23321 -14.99212 -14.89022 -14.52650 -14.18570 -14.01981 -13.78458 -13.71585 -13.48920 -13.02455 -12.94087 -12.89126 -12.56963 -12.51377 -12.48595 -12.29074 -11.98811 -11.83969 -11.62230 -11.53255 -11.22847 -11.10644 -10.58378 -10.54009 -10.17935 -10.15364 -10.05383 -8.68106 -7.87780 -5.33785 -0.32986 0.06543 1.39735 1.45992 1.46833 1.56763 1.86221 2.09652 2.40787 2.50432 2.73539 3.26938 3.44333 3.57454 3.71893 3.78576 3.90034 3.96455 3.99101 4.05058 4.29784 4.32799 4.36861 4.40129 4.48764 4.54927 4.59643 4.73102 4.73665 4.82326 4.86357 4.87893 4.99975 5.09800 5.19843 5.22936 5.31077 5.35396 5.43247 5.55505 5.65784 5.77955 6.03514 6.36265 6.39577 6.40817 6.79251 7.03972 7.14487 7.85328 8.37466 9.18515 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012038 B = 0.003146 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2325.438153 B = 8897.077711 C = 9716.310410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.325 6.325 3 C 0.209 3.791 4 C -0.259 4.259 5 C 0.175 3.825 6 N -0.545 5.545 7 C 0.374 3.626 8 O -0.487 6.487 9 C -0.259 4.259 10 C 0.587 3.413 11 O -0.574 6.574 12 N -0.705 5.705 13 C 0.137 3.863 14 C -0.099 4.099 15 H 0.075 0.925 16 C -0.096 4.096 17 C -0.129 4.129 18 C 0.173 3.827 19 N -0.609 5.609 20 C -0.264 4.264 21 H 0.066 0.934 22 C -0.050 4.050 23 N -0.935 5.935 24 Si 0.966 3.034 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.269 1.269 28 C 0.154 3.846 29 H 0.081 0.919 30 H 0.118 0.882 31 H 0.081 0.919 32 H 0.190 0.810 33 H 0.209 0.791 34 H 0.422 0.578 35 H 0.406 0.594 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.056 0.944 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.053 0.947 42 H -0.007 1.007 43 H 0.052 0.948 44 H 0.250 0.750 45 H 0.048 0.952 46 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.158 4.442 15.855 26.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.236 6.236 3 C 0.154 3.846 4 C -0.280 4.280 5 C 0.021 3.979 6 N -0.268 5.268 7 C 0.195 3.805 8 O -0.298 6.298 9 C -0.267 4.267 10 C 0.372 3.628 11 O -0.454 6.454 12 N -0.354 5.354 13 C 0.014 3.986 14 C -0.119 4.119 15 H 0.093 0.907 16 C -0.134 4.134 17 C -0.168 4.168 18 C 0.048 3.952 19 N -0.332 5.332 20 C -0.395 4.395 21 H 0.083 0.917 22 C -0.245 4.245 23 N -0.581 5.581 24 Si 0.794 3.206 25 H -0.213 1.213 26 H -0.218 1.218 27 H -0.194 1.194 28 C 0.028 3.972 29 H 0.099 0.901 30 H 0.136 0.864 31 H 0.100 0.900 32 H 0.207 0.793 33 H 0.226 0.774 34 H 0.285 0.715 35 H 0.242 0.758 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.075 0.925 39 H 0.101 0.899 40 H 0.090 0.910 41 H 0.072 0.928 42 H 0.011 0.989 43 H 0.071 0.929 44 H 0.059 0.941 45 H 0.067 0.933 46 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges -19.318 4.573 15.872 25.417 hybrid contribution 0.009 -0.171 -0.986 1.000 sum -19.309 4.402 14.886 24.775 Atomic orbital electron populations 1.23612 0.74418 1.06409 1.03697 1.86078 1.25178 1.25870 1.86460 1.19262 0.89658 0.86547 0.89109 1.22561 1.03715 0.91000 1.10705 1.23203 0.87747 0.99226 0.87768 1.67380 1.08919 1.31685 1.18833 1.18910 0.84914 0.85713 0.91005 1.84666 1.14201 1.95149 1.35794 1.20270 0.92929 0.94632 1.18836 1.17759 0.78675 0.82780 0.83561 1.90755 1.57922 1.64167 1.32578 1.46016 1.52027 1.28965 1.08385 1.21356 0.94333 0.86300 0.96642 1.21710 0.99631 0.96940 0.93663 0.90693 1.21339 0.99922 0.95665 0.96478 1.21997 1.00168 0.98459 0.96220 1.20644 0.91661 0.84037 0.98900 1.44306 1.70174 1.17037 1.01719 1.19496 1.07729 1.19440 0.92793 0.91658 1.25802 0.94866 1.01233 1.02618 1.70201 1.08995 1.49674 1.29229 0.85300 0.78187 0.77467 0.79646 1.21266 1.21764 1.19353 1.20978 0.95297 0.95117 0.85763 0.90065 0.86398 0.90015 0.79307 0.77420 0.71541 0.75815 0.92158 0.90588 0.92509 0.89931 0.91000 0.92818 0.98902 0.92930 0.94117 0.93337 0.97635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.84 113.37 1.12 1.21 16 2 O -0.33 -6.49 10.03 -88.17 -0.88 -7.37 16 3 C 0.21 4.36 6.74 23.08 0.16 4.51 16 4 C -0.26 -3.34 9.09 22.43 0.20 -3.13 16 5 C 0.18 2.50 11.15 84.58 0.94 3.44 16 6 N -0.55 -12.40 10.37 -308.27 -3.20 -15.59 16 7 C 0.37 9.77 7.77 85.14 0.66 10.43 16 8 O -0.49 -12.86 13.02 -87.24 -1.14 -13.99 16 9 C -0.26 -6.91 5.66 -19.83 -0.11 -7.02 16 10 C 0.59 18.47 6.42 86.61 0.56 19.03 16 11 O -0.57 -21.43 17.11 -4.11 -0.07 -21.50 16 12 N -0.70 -21.06 5.33 -466.55 -2.49 -23.55 16 13 C 0.14 4.11 5.07 86.38 0.44 4.55 16 14 C -0.10 -3.27 2.37 -10.71 -0.03 -3.29 16 15 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 16 C -0.10 -3.03 5.17 30.62 0.16 -2.87 16 17 C -0.13 -4.78 6.08 30.67 0.19 -4.59 16 18 C 0.17 8.48 5.30 86.36 0.46 8.94 16 19 N -0.61 -31.09 2.99 -699.12 -2.09 -33.19 16 20 C -0.26 -14.76 9.58 84.03 0.81 -13.95 16 21 H 0.07 3.54 7.88 -2.91 -0.02 3.52 16 22 C -0.05 -2.82 4.92 84.86 0.42 -2.40 16 23 N -0.93 -56.23 11.20 21.65 0.24 -55.99 16 24 Si 0.97 45.26 29.59 68.60 2.03 47.29 16 25 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 26 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 27 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 28 C 0.15 6.51 5.60 86.36 0.48 6.99 16 29 H 0.08 0.39 7.71 -2.39 -0.02 0.38 16 30 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.08 0.36 7.71 -2.39 -0.02 0.34 16 32 H 0.19 0.78 6.45 -2.91 -0.02 0.76 16 33 H 0.21 1.09 8.06 -2.91 -0.02 1.07 16 34 H 0.42 7.51 9.06 -74.06 -0.67 6.84 16 35 H 0.41 11.74 7.69 -92.70 -0.71 11.03 16 36 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 39 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 40 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 41 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 42 H -0.01 -0.38 8.14 -2.38 -0.02 -0.39 16 43 H 0.05 2.91 6.06 -2.39 -0.01 2.90 16 44 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 45 H 0.05 2.02 7.14 -2.39 -0.02 2.01 16 46 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 Total: -1.00 -79.47 379.20 -1.51 -80.98 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: -0.36 Total: 21.06 kcal Atomic # 6 Polarization: 15.40 SS G_CDS: 6.44 Total: 21.84 kcal Atomic # 7 Polarization: -120.78 SS G_CDS: -7.53 Total: -128.32 kcal Atomic # 8 Polarization: -40.77 SS G_CDS: -2.09 Total: -42.86 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -79.47 -1.51 -80.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023705940.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.197 kcal (2) G-P(sol) polarization free energy of solvation -79.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds