Wall clock time and date at job start Tue Mar 31 2020 19:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36020 * 116.99773 * 2 1 4 4 C 1.35854 * 120.31421 * 359.97438 * 3 2 1 5 5 N 1.35438 * 120.77751 * 180.02562 * 4 3 2 6 6 H 0.97001 * 119.29841 * 179.97438 * 5 4 3 7 7 C 1.36428 * 121.40912 * 359.97175 * 5 4 3 8 8 C 1.48074 * 119.72224 * 179.97438 * 7 5 4 9 9 O 1.21504 * 120.00608 * 180.02562 * 8 7 5 10 10 N 1.34782 * 119.99523 * 0.02562 * 8 7 5 11 11 C 1.46498 * 119.99890 * 180.02562 * 10 8 7 12 12 C 1.52996 * 109.47235 * 179.97438 * 11 10 8 13 13 H 1.09009 * 109.69997 * 299.85314 * 12 11 10 14 14 C 1.52763 * 109.51270 * 179.73488 * 12 11 10 15 15 C 1.53040 * 109.38579 * 185.70090 * 14 12 11 16 16 C 1.53048 * 109.53384 * 61.24217 * 15 14 12 17 17 C 1.53191 * 109.31266 * 298.63130 * 16 15 14 18 18 N 1.46925 * 109.58860 * 60.20563 * 12 11 10 19 19 C 1.36939 * 120.63011 * 353.42278 * 18 12 11 20 20 H 1.07998 * 119.99377 * 30.99004 * 19 18 12 21 21 C 1.38808 * 120.00005 * 210.98937 * 19 18 12 22 22 N 1.31619 * 119.99794 * 13.58037 * 21 19 18 23 23 Si 1.86797 * 120.00020 * 193.58135 * 21 19 18 24 24 H 1.48509 * 109.47023 * 269.99996 * 23 21 19 25 25 H 1.48499 * 109.47397 * 29.99751 * 23 21 19 26 26 H 1.48493 * 109.47197 * 150.00185 * 23 21 19 27 27 C 1.36176 * 120.56198 * 0.26309 * 7 5 4 28 28 C 1.41575 * 120.31504 * 180.02562 * 3 2 1 29 29 O 1.22270 * 120.65193 * 0.02562 * 28 3 2 30 30 H 1.09001 * 109.47239 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46935 * 299.99957 * 1 2 3 32 32 H 1.09001 * 109.47652 * 60.00101 * 1 2 3 33 33 H 1.07998 * 119.61015 * 0.02562 * 4 3 2 34 34 H 0.97001 * 120.00331 * 359.97438 * 10 8 7 35 35 H 1.08998 * 109.47588 * 59.99533 * 11 10 8 36 36 H 1.08997 * 109.46833 * 299.99815 * 11 10 8 37 37 H 1.09006 * 109.55851 * 65.66964 * 14 12 11 38 38 H 1.08989 * 109.36205 * 305.61913 * 14 12 11 39 39 H 1.08998 * 109.46172 * 301.22603 * 15 14 12 40 40 H 1.09004 * 109.44902 * 181.25288 * 15 14 12 41 41 H 1.09001 * 109.49313 * 178.67904 * 16 15 14 42 42 H 1.08997 * 109.49493 * 58.58421 * 16 15 14 43 43 H 1.08990 * 109.59046 * 294.85208 * 17 16 15 44 44 H 1.08998 * 109.70224 * 174.48669 * 17 16 15 45 45 H 0.97010 * 119.99572 * 179.97438 * 22 21 19 46 46 H 1.08005 * 120.40343 * 179.72587 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2120 0.0000 4 6 1.3127 2.3554 -0.0005 5 7 1.9178 3.5671 -0.0010 6 1 1.3730 4.3697 -0.0018 7 6 3.2771 3.6830 -0.0005 8 6 3.8993 5.0267 -0.0017 9 8 5.1095 5.1359 -0.0017 10 7 3.1232 6.1286 -0.0028 11 6 3.7388 7.4580 -0.0045 12 6 2.6441 8.5269 -0.0061 13 1 2.0244 8.4168 -0.8961 14 6 3.2849 9.9136 -0.0013 15 6 2.1936 10.9770 0.1405 16 6 1.4557 10.7794 1.4667 17 6 0.7902 9.3996 1.4755 18 7 1.8110 8.3805 1.1952 19 6 1.9863 7.3176 2.0406 20 1 2.9654 6.8774 2.1586 21 6 0.9057 6.8061 2.7459 22 7 -0.3200 7.1523 2.4140 23 14 1.1910 5.6265 4.1659 24 1 1.2008 4.2316 3.6563 25 1 2.4965 5.9288 4.8059 26 1 0.1027 5.7811 5.1642 27 6 4.0667 2.5735 -0.0048 28 6 3.4598 1.2939 -0.0005 29 8 4.1430 0.2799 -0.0015 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 0.2343 2.2974 -0.0005 34 1 2.1572 6.0415 -0.0032 35 1 4.3575 7.5708 -0.8947 36 1 4.3579 7.5728 0.8852 37 1 3.8253 10.0691 -0.9351 38 1 3.9773 9.9887 0.8371 39 1 1.4877 10.8853 -0.6849 40 1 2.6476 11.9678 0.1218 41 1 0.6942 11.5513 1.5778 42 1 2.1653 10.8464 2.2913 43 1 0.0164 9.3621 0.7089 44 1 0.3458 9.2122 2.4530 45 1 -1.0753 6.7945 2.9067 46 1 5.1426 2.6683 -0.0088 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024556957.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:00 Heat of formation + Delta-G solvation = -46.881280 kcal Electronic energy + Delta-G solvation = -30134.415950 eV Core-core repulsion = 26025.929291 eV Total energy + Delta-G solvation = -4108.486659 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.28499 -39.58568 -38.22723 -37.73535 -37.42555 -34.60824 -33.30935 -31.53351 -31.29594 -30.35460 -30.09852 -27.70311 -26.40498 -25.26508 -23.77624 -23.03204 -22.34120 -21.07857 -20.46566 -19.60388 -19.25181 -17.97616 -17.61394 -16.54489 -16.11654 -16.09204 -15.84235 -15.59425 -15.04740 -14.87689 -14.43439 -14.29118 -14.21520 -14.06541 -13.78865 -13.57407 -13.40221 -13.07182 -12.95083 -12.68299 -12.60084 -12.26644 -11.99754 -11.59652 -11.45908 -11.40522 -11.16120 -10.95570 -10.76748 -10.47141 -10.33638 -10.17367 -10.12381 -9.70172 -9.57116 -9.37460 -9.34849 -8.88159 -8.59665 -7.59733 -6.90242 -6.09049 -3.56710 0.82144 1.25269 2.69289 3.01298 3.13146 3.16977 3.24626 3.28525 3.30709 3.84437 4.20309 4.44047 4.67607 4.76887 4.96299 5.01740 5.03365 5.08381 5.11739 5.27826 5.36157 5.47496 5.52263 5.57211 5.77157 5.80995 5.86494 5.94589 6.07868 6.21893 6.22179 6.23194 6.43567 6.53491 6.55218 6.58814 6.67990 6.73987 6.78165 6.82969 7.19707 7.20432 7.46557 7.54293 7.71991 8.13421 8.15990 8.27414 8.91544 9.53207 10.11776 10.96288 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013498 B = 0.003984 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.877038 B = 7027.297322 C = 8098.949178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.290 6.290 3 C -0.042 4.042 4 C 0.038 3.962 5 N -0.555 5.555 6 H 0.427 0.573 7 C 0.136 3.864 8 C 0.548 3.452 9 O -0.524 6.524 10 N -0.684 5.684 11 C 0.132 3.868 12 C 0.160 3.840 13 H 0.034 0.966 14 C -0.128 4.128 15 C -0.107 4.107 16 C -0.145 4.145 17 C 0.173 3.827 18 N -0.589 5.589 19 C -0.257 4.257 20 H 0.069 0.931 21 C 0.010 3.990 22 N -0.896 5.896 23 Si 0.886 3.114 24 H -0.285 1.285 25 H -0.277 1.277 26 H -0.287 1.287 27 C -0.224 4.224 28 C 0.402 3.598 29 O -0.509 6.509 30 H 0.101 0.899 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.169 0.831 34 H 0.410 0.590 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.053 0.947 38 H 0.062 0.938 39 H 0.053 0.947 40 H 0.046 0.954 41 H 0.047 0.953 42 H 0.053 0.947 43 H 0.019 0.981 44 H 0.085 0.915 45 H 0.256 0.744 46 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.395 -0.439 -6.684 7.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.202 6.202 3 C -0.093 4.093 4 C -0.090 4.090 5 N -0.168 5.168 6 H 0.266 0.734 7 C 0.023 3.977 8 C 0.331 3.669 9 O -0.401 6.401 10 N -0.335 5.335 11 C 0.009 3.991 12 C 0.053 3.947 13 H 0.051 0.949 14 C -0.168 4.168 15 C -0.145 4.145 16 C -0.184 4.184 17 C 0.048 3.952 18 N -0.314 5.314 19 C -0.387 4.387 20 H 0.087 0.913 21 C -0.190 4.190 22 N -0.539 5.539 23 Si 0.715 3.285 24 H -0.212 1.212 25 H -0.202 1.202 26 H -0.213 1.213 27 C -0.251 4.251 28 C 0.293 3.707 29 O -0.394 6.394 30 H 0.119 0.881 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.186 0.814 34 H 0.248 0.752 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.037 0.963 44 H 0.103 0.897 45 H 0.066 0.934 46 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -1.268 -1.152 -6.604 6.823 hybrid contribution -1.240 0.042 1.043 1.621 sum -2.509 -1.110 -5.561 6.200 Atomic orbital electron populations 1.23119 0.79367 1.04242 1.01076 1.86251 1.20166 1.24404 1.89336 1.20404 0.94827 0.84555 1.09544 1.21692 0.98895 0.84226 1.04177 1.40881 1.05400 1.08897 1.61632 0.73397 1.20534 0.82804 0.96096 0.98306 1.17871 0.87079 0.83114 0.78802 1.90798 1.12981 1.85919 1.50359 1.46002 1.10857 1.05530 1.71146 1.21456 0.95742 0.80347 1.01559 1.20664 0.91175 0.91672 0.91168 0.94881 1.21867 0.98033 0.96119 1.00763 1.21361 0.97561 0.97203 0.98389 1.22195 0.99406 1.00257 0.96564 1.20772 0.89307 0.83765 1.01384 1.44081 1.40021 1.24813 1.22456 1.19222 0.93153 1.07600 1.18695 0.91296 1.25069 0.95225 0.98623 1.00098 1.70005 0.97214 1.46205 1.40488 0.86554 0.77891 0.80872 0.83169 1.21202 1.20217 1.21305 1.22390 1.02151 0.90355 1.10223 1.16754 0.86014 0.89796 0.78137 1.90825 1.65739 1.37583 1.45231 0.88088 0.92698 0.92773 0.81408 0.75174 0.91783 0.90798 0.92818 0.91955 0.92833 0.93571 0.93448 0.92779 0.96266 0.89704 0.93410 0.81529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 101.05 0.99 1.15 16 2 O -0.29 -4.29 10.33 -35.63 -0.37 -4.66 16 3 C -0.04 -0.65 6.71 -39.16 -0.26 -0.91 16 4 C 0.04 0.47 10.22 -16.81 -0.17 0.30 16 5 N -0.56 -7.23 5.26 -9.58 -0.05 -7.28 16 6 H 0.43 5.07 7.00 -40.82 -0.29 4.78 16 7 C 0.14 2.08 6.77 -82.53 -0.56 1.53 16 8 C 0.55 9.11 7.80 -12.22 -0.10 9.02 16 9 O -0.52 -10.05 16.27 5.36 0.09 -9.96 16 10 N -0.68 -10.83 3.83 -61.19 -0.23 -11.07 16 11 C 0.13 2.11 4.42 -4.04 -0.02 2.10 16 12 C 0.16 2.64 2.99 -67.82 -0.20 2.44 16 13 H 0.03 0.55 8.14 -51.92 -0.42 0.13 16 14 C -0.13 -1.87 5.34 -26.83 -0.14 -2.02 16 15 C -0.11 -1.56 5.89 -26.69 -0.16 -1.72 16 16 C -0.15 -2.42 6.08 -26.61 -0.16 -2.58 16 17 C 0.17 3.48 5.27 -3.71 -0.02 3.46 16 18 N -0.59 -11.76 2.98 -165.03 -0.49 -12.25 16 19 C -0.26 -5.64 6.97 -15.06 -0.10 -5.74 16 20 H 0.07 1.57 5.85 -52.49 -0.31 1.26 16 21 C 0.01 0.22 4.98 -17.43 -0.09 0.14 16 22 N -0.90 -21.42 11.22 55.49 0.62 -20.80 16 23 Si 0.89 19.31 29.57 -169.99 -5.03 14.28 16 24 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 26 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 27 C -0.22 -3.72 9.53 -39.03 -0.37 -4.09 16 28 C 0.40 7.27 6.78 -37.02 -0.25 7.02 16 29 O -0.51 -10.90 17.71 -11.15 -0.20 -11.10 16 30 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.45 7.66 -51.93 -0.40 0.06 16 32 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 33 H 0.17 1.47 6.21 -52.49 -0.33 1.15 16 34 H 0.41 6.40 5.60 -40.82 -0.23 6.17 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 1.32 7.42 -51.93 -0.39 0.93 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.08 1.97 6.19 -51.93 -0.32 1.65 16 45 H 0.26 6.09 8.31 -40.82 -0.34 5.75 16 46 H 0.17 2.77 7.58 -52.48 -0.40 2.38 16 LS Contribution 368.96 15.07 5.56 5.56 Total: -1.00 -29.60 368.96 -8.12 -37.73 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -6.41 Total: 9.47 kcal Atomic # 6 Polarization: 11.70 SS G_CDS: -1.61 Total: 10.08 kcal Atomic # 7 Polarization: -51.25 SS G_CDS: -0.15 Total: -51.40 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -0.48 Total: -25.72 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.03 Total: 14.28 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.60 -8.12 -37.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024556957.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.155 kcal (2) G-P(sol) polarization free energy of solvation -29.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds