Wall clock time and date at job start Tue Mar 31 2020 19:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36020 * 116.99773 * 2 1 4 4 C 1.35854 * 120.31421 * 359.97438 * 3 2 1 5 5 N 1.35438 * 120.77751 * 180.02562 * 4 3 2 6 6 H 0.97001 * 119.29841 * 179.97438 * 5 4 3 7 7 C 1.36428 * 121.40912 * 359.97175 * 5 4 3 8 8 C 1.48074 * 119.72224 * 179.97438 * 7 5 4 9 9 O 1.21504 * 120.00608 * 180.02562 * 8 7 5 10 10 N 1.34782 * 119.99523 * 0.02562 * 8 7 5 11 11 C 1.46498 * 119.99890 * 180.02562 * 10 8 7 12 12 C 1.52996 * 109.47235 * 179.97438 * 11 10 8 13 13 H 1.09009 * 109.69997 * 299.85314 * 12 11 10 14 14 C 1.52763 * 109.51270 * 179.73488 * 12 11 10 15 15 C 1.53040 * 109.38579 * 185.70090 * 14 12 11 16 16 C 1.53048 * 109.53384 * 61.24217 * 15 14 12 17 17 C 1.53191 * 109.31266 * 298.63130 * 16 15 14 18 18 N 1.46925 * 109.58860 * 60.20563 * 12 11 10 19 19 C 1.36939 * 120.63011 * 353.42278 * 18 12 11 20 20 H 1.07998 * 119.99377 * 30.99004 * 19 18 12 21 21 C 1.38808 * 120.00005 * 210.98937 * 19 18 12 22 22 N 1.31619 * 119.99794 * 13.58037 * 21 19 18 23 23 Si 1.86797 * 120.00020 * 193.58135 * 21 19 18 24 24 H 1.48509 * 109.47023 * 269.99996 * 23 21 19 25 25 H 1.48499 * 109.47397 * 29.99751 * 23 21 19 26 26 H 1.48493 * 109.47197 * 150.00185 * 23 21 19 27 27 C 1.36176 * 120.56198 * 0.26309 * 7 5 4 28 28 C 1.41575 * 120.31504 * 180.02562 * 3 2 1 29 29 O 1.22270 * 120.65193 * 0.02562 * 28 3 2 30 30 H 1.09001 * 109.47239 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46935 * 299.99957 * 1 2 3 32 32 H 1.09001 * 109.47652 * 60.00101 * 1 2 3 33 33 H 1.07998 * 119.61015 * 0.02562 * 4 3 2 34 34 H 0.97001 * 120.00331 * 359.97438 * 10 8 7 35 35 H 1.08998 * 109.47588 * 59.99533 * 11 10 8 36 36 H 1.08997 * 109.46833 * 299.99815 * 11 10 8 37 37 H 1.09006 * 109.55851 * 65.66964 * 14 12 11 38 38 H 1.08989 * 109.36205 * 305.61913 * 14 12 11 39 39 H 1.08998 * 109.46172 * 301.22603 * 15 14 12 40 40 H 1.09004 * 109.44902 * 181.25288 * 15 14 12 41 41 H 1.09001 * 109.49313 * 178.67904 * 16 15 14 42 42 H 1.08997 * 109.49493 * 58.58421 * 16 15 14 43 43 H 1.08990 * 109.59046 * 294.85208 * 17 16 15 44 44 H 1.08998 * 109.70224 * 174.48669 * 17 16 15 45 45 H 0.97010 * 119.99572 * 179.97438 * 22 21 19 46 46 H 1.08005 * 120.40343 * 179.72587 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2120 0.0000 4 6 1.3127 2.3554 -0.0005 5 7 1.9178 3.5671 -0.0010 6 1 1.3730 4.3697 -0.0018 7 6 3.2771 3.6830 -0.0005 8 6 3.8993 5.0267 -0.0017 9 8 5.1095 5.1359 -0.0017 10 7 3.1232 6.1286 -0.0028 11 6 3.7388 7.4580 -0.0045 12 6 2.6441 8.5269 -0.0061 13 1 2.0244 8.4168 -0.8961 14 6 3.2849 9.9136 -0.0013 15 6 2.1936 10.9770 0.1405 16 6 1.4557 10.7794 1.4667 17 6 0.7902 9.3996 1.4755 18 7 1.8110 8.3805 1.1952 19 6 1.9863 7.3176 2.0406 20 1 2.9654 6.8774 2.1586 21 6 0.9057 6.8061 2.7459 22 7 -0.3200 7.1523 2.4140 23 14 1.1910 5.6265 4.1659 24 1 1.2008 4.2316 3.6563 25 1 2.4965 5.9288 4.8059 26 1 0.1027 5.7811 5.1642 27 6 4.0667 2.5735 -0.0048 28 6 3.4598 1.2939 -0.0005 29 8 4.1430 0.2799 -0.0015 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 0.2343 2.2974 -0.0005 34 1 2.1572 6.0415 -0.0032 35 1 4.3575 7.5708 -0.8947 36 1 4.3579 7.5728 0.8852 37 1 3.8253 10.0691 -0.9351 38 1 3.9773 9.9887 0.8371 39 1 1.4877 10.8853 -0.6849 40 1 2.6476 11.9678 0.1218 41 1 0.6942 11.5513 1.5778 42 1 2.1653 10.8464 2.2913 43 1 0.0164 9.3621 0.7089 44 1 0.3458 9.2122 2.4530 45 1 -1.0753 6.7945 2.9067 46 1 5.1426 2.6683 -0.0088 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024556957.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:59 Heat of formation + Delta-G solvation = -65.372815 kcal Electronic energy + Delta-G solvation = -30135.217804 eV Core-core repulsion = 26025.929291 eV Total energy + Delta-G solvation = -4109.288512 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.52308 -40.89122 -39.50591 -38.97506 -38.76602 -35.96974 -34.91935 -32.82618 -32.63308 -31.77226 -31.47076 -28.54752 -27.78641 -26.77332 -25.10431 -24.19069 -23.78736 -22.42993 -21.81548 -20.83085 -20.58945 -19.25424 -18.80529 -18.08401 -17.44497 -17.32706 -17.08698 -16.93895 -16.31855 -16.22528 -15.81483 -15.64171 -15.52097 -15.23971 -15.13155 -14.84342 -14.68911 -14.53726 -14.26772 -14.03809 -13.84199 -13.63983 -13.45258 -12.87069 -12.82776 -12.58573 -12.43530 -12.33661 -12.30904 -12.07305 -11.77758 -11.55827 -11.49735 -11.08829 -11.02100 -10.73103 -10.58843 -10.51356 -10.03460 -8.81412 -8.56217 -7.84619 -5.31197 -0.49660 0.08913 1.35942 1.46753 1.50714 1.52872 1.67901 1.88758 2.27923 2.45264 2.55594 3.28858 3.39764 3.50509 3.59871 3.63089 3.82692 3.98067 4.24756 4.29243 4.31587 4.41225 4.41579 4.45324 4.54252 4.59390 4.67401 4.75320 4.77729 4.89914 4.98770 5.02901 5.17259 5.24358 5.26146 5.30841 5.41235 5.48319 5.51060 5.66602 5.68918 5.75503 5.87075 6.20081 6.38428 6.44268 6.86347 6.93362 7.18673 7.87924 8.41996 9.18424 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013498 B = 0.003984 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.877038 B = 7027.297322 C = 8098.949178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.318 6.318 3 C -0.059 4.059 4 C 0.067 3.933 5 N -0.538 5.538 6 H 0.437 0.563 7 C 0.145 3.855 8 C 0.552 3.448 9 O -0.551 6.551 10 N -0.677 5.677 11 C 0.134 3.866 12 C 0.161 3.839 13 H 0.044 0.956 14 C -0.125 4.125 15 C -0.103 4.103 16 C -0.138 4.138 17 C 0.178 3.822 18 N -0.600 5.600 19 C -0.240 4.240 20 H 0.061 0.939 21 C -0.018 4.018 22 N -0.912 5.912 23 Si 0.919 3.081 24 H -0.279 1.279 25 H -0.293 1.293 26 H -0.298 1.298 27 C -0.234 4.234 28 C 0.384 3.616 29 O -0.565 6.565 30 H 0.118 0.882 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.215 0.785 34 H 0.413 0.587 35 H 0.086 0.914 36 H 0.054 0.946 37 H 0.084 0.916 38 H 0.052 0.948 39 H 0.060 0.940 40 H 0.069 0.931 41 H 0.061 0.939 42 H 0.042 0.958 43 H 0.007 0.993 44 H 0.049 0.951 45 H 0.250 0.750 46 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.722 1.099 -8.027 8.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.231 6.231 3 C -0.109 4.109 4 C -0.062 4.062 5 N -0.150 5.150 6 H 0.278 0.722 7 C 0.030 3.970 8 C 0.336 3.664 9 O -0.429 6.429 10 N -0.328 5.328 11 C 0.011 3.989 12 C 0.055 3.945 13 H 0.061 0.939 14 C -0.164 4.164 15 C -0.141 4.141 16 C -0.177 4.177 17 C 0.053 3.947 18 N -0.325 5.325 19 C -0.371 4.371 20 H 0.079 0.921 21 C -0.215 4.215 22 N -0.558 5.558 23 Si 0.750 3.250 24 H -0.205 1.205 25 H -0.220 1.220 26 H -0.225 1.225 27 C -0.261 4.261 28 C 0.279 3.721 29 O -0.456 6.456 30 H 0.136 0.864 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.232 0.768 34 H 0.251 0.749 35 H 0.105 0.895 36 H 0.072 0.928 37 H 0.102 0.898 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.080 0.920 42 H 0.061 0.939 43 H 0.026 0.974 44 H 0.068 0.932 45 H 0.060 0.940 46 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -2.630 0.434 -7.962 8.397 hybrid contribution -0.896 -0.326 1.465 1.747 sum -3.525 0.109 -6.498 7.393 Atomic orbital electron populations 1.23505 0.76469 1.06157 1.02752 1.86217 1.23178 1.24226 1.89519 1.20172 0.93873 0.85973 1.10921 1.22242 1.00569 0.82645 1.00779 1.41012 1.04670 1.09871 1.59446 0.72198 1.20265 0.83654 0.95009 0.98089 1.17931 0.86723 0.83510 0.78281 1.90790 1.14187 1.86299 1.51615 1.45955 1.10867 1.05460 1.70494 1.21478 0.95593 0.80114 1.01696 1.20823 0.90822 0.93099 0.89784 0.93885 1.21841 0.97957 0.94620 1.01988 1.21343 0.97429 0.98387 0.96899 1.22074 0.99522 0.98340 0.97792 1.20579 0.89425 0.85786 0.98949 1.44228 1.40320 1.24345 1.23615 1.19197 0.92381 1.07190 1.18287 0.92128 1.25278 0.95328 0.99743 1.01175 1.70068 0.97334 1.47263 1.41130 0.86063 0.76285 0.80673 0.82029 1.20538 1.21973 1.22470 1.22260 1.02057 0.90548 1.11266 1.17164 0.87582 0.89476 0.77840 1.90784 1.66989 1.38893 1.48916 0.86404 0.91427 0.90381 0.76839 0.74869 0.89546 0.92771 0.89776 0.92946 0.92143 0.91194 0.92045 0.93917 0.97449 0.93249 0.93978 0.82500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.81 113.37 1.11 1.19 16 2 O -0.32 -9.12 10.33 -78.65 -0.81 -9.93 16 3 C -0.06 -1.76 6.71 22.54 0.15 -1.61 16 4 C 0.07 1.45 10.22 83.58 0.85 2.31 16 5 N -0.54 -12.70 5.26 -184.21 -0.97 -13.67 16 6 H 0.44 8.99 7.00 -92.71 -0.65 8.34 16 7 C 0.15 4.30 6.77 40.56 0.27 4.58 16 8 C 0.55 17.78 7.80 86.85 0.68 18.46 16 9 O -0.55 -20.91 16.27 -3.73 -0.06 -20.97 16 10 N -0.68 -20.24 3.83 -465.78 -1.78 -22.02 16 11 C 0.13 4.01 4.42 86.38 0.38 4.39 16 12 C 0.16 4.87 2.99 44.83 0.13 5.00 16 13 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 14 C -0.12 -3.22 5.34 30.53 0.16 -3.05 16 15 C -0.10 -2.61 5.89 30.62 0.18 -2.43 16 16 C -0.14 -4.32 6.08 30.67 0.19 -4.14 16 17 C 0.18 6.98 5.27 86.36 0.46 7.44 16 18 N -0.60 -23.06 2.98 -676.03 -2.01 -25.08 16 19 C -0.24 -10.29 6.97 84.03 0.59 -9.70 16 20 H 0.06 2.71 5.85 -2.91 -0.02 2.70 16 21 C -0.02 -0.79 4.98 84.86 0.42 -0.37 16 22 N -0.91 -43.12 11.22 21.65 0.24 -42.88 16 23 Si 0.92 39.22 29.57 68.60 2.03 41.25 16 24 H -0.28 -11.49 7.11 99.48 0.71 -10.79 16 25 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 26 H -0.30 -13.20 7.11 99.48 0.71 -12.50 16 27 C -0.23 -7.94 9.53 22.63 0.22 -7.73 16 28 C 0.38 14.27 6.78 23.93 0.16 14.43 16 29 O -0.57 -25.62 17.71 8.93 0.16 -25.47 16 30 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.07 0.88 7.66 -2.38 -0.02 0.86 16 32 H 0.08 0.84 7.66 -2.39 -0.02 0.82 16 33 H 0.22 2.68 6.21 -2.91 -0.02 2.67 16 34 H 0.41 11.96 5.60 -92.71 -0.52 11.44 16 35 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.05 1.86 7.42 -2.39 -0.02 1.84 16 37 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 38 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.06 1.73 8.14 -2.39 -0.02 1.72 16 42 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.01 0.30 8.14 -2.39 -0.02 0.29 16 44 H 0.05 2.29 6.19 -2.39 -0.01 2.27 16 45 H 0.25 11.83 8.31 -92.70 -0.77 11.06 16 46 H 0.16 5.53 7.58 -2.91 -0.02 5.50 16 Total: -1.00 -66.53 368.96 2.61 -63.92 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: -0.14 Total: 26.07 kcal Atomic # 6 Polarization: 22.82 SS G_CDS: 5.96 Total: 28.77 kcal Atomic # 7 Polarization: -99.12 SS G_CDS: -4.52 Total: -103.65 kcal Atomic # 8 Polarization: -55.66 SS G_CDS: -0.71 Total: -56.37 kcal Atomic # 14 Polarization: 39.22 SS G_CDS: 2.03 Total: 41.25 kcal Total: -66.53 2.61 -63.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024556957.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.450 kcal (2) G-P(sol) polarization free energy of solvation -66.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds