Wall clock time and date at job start Tue Mar 31 2020 19:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35500 * 117.00080 * 2 1 4 4 C 1.39211 * 120.90057 * 5.19122 * 3 2 1 5 5 C 1.37908 * 119.39343 * 179.97438 * 4 3 2 6 6 N 1.32078 * 121.28772 * 359.97438 * 5 4 3 7 7 C 1.32194 * 121.97872 * 359.73889 * 6 5 4 8 8 O 1.35422 * 119.77655 * 180.29991 * 7 6 5 9 9 C 1.40287 * 120.44195 * 0.54554 * 7 6 5 10 10 C 1.47235 * 120.64885 * 179.72445 * 9 7 6 11 11 O 1.21624 * 119.99956 * 274.59796 * 10 9 7 12 12 N 1.34777 * 119.99866 * 94.60263 * 10 9 7 13 13 C 1.46501 * 119.99790 * 184.57479 * 12 10 9 14 14 C 1.52996 * 109.47125 * 175.12541 * 13 12 10 15 15 H 1.09002 * 109.58573 * 55.03864 * 14 13 12 16 16 C 1.53189 * 109.58762 * 294.61124 * 14 13 12 17 17 C 1.53042 * 109.31592 * 185.57459 * 16 14 13 18 18 C 1.53051 * 109.53564 * 61.36443 * 17 16 14 19 19 C 1.53191 * 109.31184 * 298.63845 * 18 17 16 20 20 N 1.46926 * 108.77950 * 54.63404 * 19 18 17 21 21 C 1.36937 * 120.63516 * 126.36582 * 20 19 18 22 22 H 1.08000 * 120.00310 * 212.21401 * 21 20 19 23 23 C 1.38817 * 119.99370 * 32.21638 * 21 20 19 24 24 N 1.31612 * 120.00127 * 10.52863 * 23 21 20 25 25 Si 1.86797 * 119.99635 * 190.53122 * 23 21 20 26 26 H 1.48501 * 109.47145 * 5.00191 * 25 23 21 27 27 H 1.48496 * 109.47215 * 124.99973 * 25 23 21 28 28 H 1.48501 * 109.47368 * 245.00136 * 25 23 21 29 29 H 1.09001 * 109.47154 * 300.00784 * 1 2 3 30 30 H 1.08998 * 109.46580 * 60.00849 * 1 2 3 31 31 H 1.09002 * 109.47075 * 180.02562 * 1 2 3 32 32 H 1.07999 * 120.30743 * 359.96347 * 4 3 2 33 33 H 1.07988 * 119.35589 * 180.02562 * 5 4 3 34 34 H 0.96705 * 113.99524 * 270.24568 * 8 7 6 35 35 H 0.97000 * 120.00221 * 4.84912 * 12 10 9 36 36 H 1.08995 * 109.46963 * 295.12548 * 13 12 10 37 37 H 1.09000 * 109.47183 * 55.12827 * 13 12 10 38 38 H 1.08996 * 109.50066 * 305.52673 * 16 14 13 39 39 H 1.09005 * 109.50092 * 65.62723 * 16 14 13 40 40 H 1.09001 * 109.46400 * 301.35223 * 17 16 14 41 41 H 1.08998 * 109.45364 * 181.37822 * 17 16 14 42 42 H 1.08999 * 109.49763 * 178.68368 * 18 17 16 43 43 H 1.08996 * 109.49407 * 58.58585 * 18 17 16 44 44 H 1.09007 * 109.58742 * 294.84697 * 19 18 17 45 45 H 1.09000 * 109.70297 * 174.48739 * 19 18 17 46 46 H 0.97000 * 120.00005 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 6 1.3089 2.3844 0.1081 5 6 1.9670 3.5963 0.1053 6 7 3.2821 3.6624 0.0026 7 6 4.0319 2.5783 -0.0971 8 8 5.3774 2.6978 -0.1941 9 6 3.4429 1.3052 -0.1083 10 6 4.2732 0.0950 -0.2252 11 8 4.6056 -0.3107 -1.3226 12 7 4.6649 -0.5633 0.8837 13 6 5.5727 -1.7079 0.7739 14 6 5.9530 -2.1934 2.1740 15 1 5.0492 -2.4106 2.7434 16 6 6.7666 -1.1105 2.8897 17 6 7.2614 -1.6535 4.2323 18 6 8.1704 -2.8612 3.9922 19 6 7.3727 -3.9639 3.2890 20 7 6.7725 -3.4083 2.0684 21 6 6.9734 -4.0111 0.8554 22 1 7.0141 -3.4144 -0.0439 23 6 7.1246 -5.3890 0.7817 24 7 6.8712 -6.1361 1.8351 25 14 7.6880 -6.1827 -0.8126 26 1 8.0209 -5.1257 -1.8012 27 1 8.8906 -7.0145 -0.5536 28 1 6.6005 -7.0389 -1.3507 29 1 -0.3633 0.5140 0.8899 30 1 -0.3632 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 0.2328 2.3489 0.1931 33 1 1.3960 4.5090 0.1896 34 1 5.7012 2.7712 -1.1024 35 1 4.3425 -0.2817 1.7542 36 1 5.0776 -2.5136 0.2320 37 1 6.4724 -1.4078 0.2366 38 1 7.6209 -0.8304 2.2735 39 1 6.1382 -0.2363 3.0603 40 1 6.4077 -1.9565 4.8384 41 1 7.8200 -0.8767 4.7544 42 1 8.5412 -3.2330 4.9474 43 1 9.0114 -2.5645 3.3655 44 1 6.5859 -4.3248 3.9515 45 1 8.0366 -4.7878 3.0273 46 1 6.9765 -7.0990 1.7835 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024764512.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:47 Heat of formation + Delta-G solvation = -53.726832 kcal Electronic energy + Delta-G solvation = -29735.668947 eV Core-core repulsion = 25626.885443 eV Total energy + Delta-G solvation = -4108.783504 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.26274 -39.21659 -38.91898 -37.64537 -36.97251 -34.35384 -33.06464 -32.24633 -31.01640 -30.52681 -29.68922 -27.89011 -26.15416 -25.06118 -24.16937 -23.10247 -22.07663 -20.87930 -20.45082 -19.45376 -19.07529 -17.98910 -17.76337 -17.28747 -16.44767 -16.23457 -15.73709 -15.50499 -15.09729 -14.79664 -14.67908 -14.54023 -14.01603 -13.76269 -13.56677 -13.34888 -13.20734 -13.02364 -12.77895 -12.48076 -12.25830 -12.06513 -11.95543 -11.81838 -11.61812 -11.10391 -10.88492 -10.67930 -10.51741 -10.28586 -10.20370 -10.08727 -9.93527 -9.61589 -9.42603 -9.34470 -9.29644 -9.21608 -8.61168 -8.44257 -6.58991 -5.76720 -3.25753 0.49477 0.87360 2.57808 2.74510 3.15451 3.33111 3.40250 3.48211 3.52156 3.62248 4.22535 4.48609 4.52327 4.62821 4.68436 4.76391 4.79934 5.12174 5.18230 5.28812 5.33718 5.39897 5.53334 5.58656 5.66596 5.74830 5.88968 5.98312 6.04119 6.21341 6.39980 6.41523 6.61033 6.66351 6.74082 6.74612 6.80498 6.83973 6.97131 7.06820 7.20629 7.43834 7.56734 7.72016 7.78134 7.84206 8.43628 8.49445 9.23519 9.84298 10.42161 11.30986 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013072 B = 0.003372 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.424236 B = 8300.465372 C = 9043.446685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.297 6.297 3 C 0.214 3.786 4 C -0.276 4.276 5 C 0.171 3.829 6 N -0.525 5.525 7 C 0.384 3.616 8 O -0.470 6.470 9 C -0.225 4.225 10 C 0.579 3.421 11 O -0.533 6.533 12 N -0.708 5.708 13 C 0.128 3.872 14 C 0.166 3.834 15 H 0.029 0.971 16 C -0.129 4.129 17 C -0.109 4.109 18 C -0.144 4.144 19 C 0.175 3.825 20 N -0.584 5.584 21 C -0.256 4.256 22 H 0.069 0.931 23 C 0.008 3.992 24 N -0.902 5.902 25 Si 0.901 3.099 26 H -0.275 1.275 27 H -0.289 1.289 28 H -0.289 1.289 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.109 0.891 32 H 0.148 0.852 33 H 0.167 0.833 34 H 0.411 0.589 35 H 0.396 0.604 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.060 0.940 39 H 0.046 0.954 40 H 0.051 0.949 41 H 0.043 0.957 42 H 0.046 0.954 43 H 0.053 0.947 44 H 0.017 0.983 45 H 0.088 0.912 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.523 17.699 0.218 21.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.206 6.206 3 C 0.159 3.841 4 C -0.297 4.297 5 C 0.015 3.985 6 N -0.247 5.247 7 C 0.205 3.795 8 O -0.279 6.279 9 C -0.233 4.233 10 C 0.362 3.638 11 O -0.410 6.410 12 N -0.357 5.357 13 C 0.006 3.994 14 C 0.059 3.941 15 H 0.046 0.954 16 C -0.169 4.169 17 C -0.146 4.146 18 C -0.184 4.184 19 C 0.050 3.950 20 N -0.308 5.308 21 C -0.386 4.386 22 H 0.087 0.913 23 C -0.191 4.191 24 N -0.546 5.546 25 Si 0.730 3.270 26 H -0.200 1.200 27 H -0.216 1.216 28 H -0.216 1.216 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.127 0.873 32 H 0.166 0.834 33 H 0.184 0.816 34 H 0.271 0.729 35 H 0.229 0.771 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.072 0.928 44 H 0.035 0.965 45 H 0.106 0.894 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.711 17.682 0.017 21.208 hybrid contribution -0.541 -0.996 -0.725 1.345 sum -12.252 16.686 -0.708 20.713 Atomic orbital electron populations 1.23256 0.76941 1.05090 1.01751 1.86145 1.22478 1.25508 1.86517 1.19135 0.90432 0.85327 0.89230 1.22166 1.02062 0.92653 1.12824 1.22394 0.88659 0.97235 0.90249 1.67316 1.07262 1.32195 1.17958 1.18789 0.84524 0.85458 0.90725 1.84681 1.14613 1.94833 1.33753 1.20468 0.91928 0.96048 1.14835 1.17383 0.79415 0.82108 0.84846 1.90823 1.56502 1.67311 1.26363 1.46020 1.48402 1.32691 1.08600 1.21639 0.92568 0.86496 0.98705 1.20541 0.92910 0.88443 0.92199 0.95371 1.22063 1.00149 0.97567 0.97095 1.21384 0.99051 0.97562 0.96632 1.22205 0.98955 0.97737 0.99454 1.20781 0.94915 0.93267 0.86075 1.43939 1.54977 1.26888 1.04994 1.19218 1.44327 0.89193 0.85865 0.91293 1.25163 1.00291 0.96516 0.97085 1.69992 1.51498 1.04360 1.28792 0.86241 0.77995 0.79359 0.83367 1.20019 1.21595 1.21598 0.91949 0.91985 0.87318 0.83406 0.81565 0.72933 0.77082 0.90118 0.91076 0.92125 0.93519 0.92983 0.93820 0.93512 0.92789 0.96484 0.89413 0.93691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.85 101.05 1.00 1.16 16 2 O -0.30 -3.56 10.03 -18.19 -0.18 -3.75 16 3 C 0.21 2.53 6.73 -38.32 -0.26 2.27 16 4 C -0.28 -2.30 9.11 -39.34 -0.36 -2.66 16 5 C 0.17 1.46 11.15 -17.57 -0.20 1.26 16 6 N -0.52 -6.18 10.37 -13.06 -0.14 -6.32 16 7 C 0.38 5.05 7.77 -16.63 -0.13 4.92 16 8 O -0.47 -5.96 13.01 -17.96 -0.23 -6.19 16 9 C -0.23 -3.18 5.67 -104.57 -0.59 -3.77 16 10 C 0.58 10.10 6.41 -12.60 -0.08 10.02 16 11 O -0.53 -11.25 17.11 5.26 0.09 -11.16 16 12 N -0.71 -11.94 5.27 -61.45 -0.32 -12.26 16 13 C 0.13 2.59 3.85 -4.04 -0.02 2.58 16 14 C 0.17 3.42 2.98 -67.60 -0.20 3.22 16 15 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 16 C -0.13 -2.29 5.18 -26.61 -0.14 -2.43 16 17 C -0.11 -1.87 5.88 -26.68 -0.16 -2.03 16 18 C -0.14 -2.80 6.08 -26.61 -0.16 -2.96 16 19 C 0.18 4.16 5.25 -3.71 -0.02 4.14 16 20 N -0.58 -14.39 2.98 -164.77 -0.49 -14.88 16 21 C -0.26 -6.95 8.44 -15.06 -0.13 -7.07 16 22 H 0.07 1.87 6.37 -52.49 -0.33 1.54 16 23 C 0.01 0.23 5.05 -17.43 -0.09 0.15 16 24 N -0.90 -25.99 11.10 55.49 0.62 -25.37 16 25 Si 0.90 22.03 29.57 -169.99 -5.03 17.01 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 28 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 29 H 0.06 0.29 7.48 -51.93 -0.39 -0.10 16 30 H 0.06 0.32 7.92 -51.93 -0.41 -0.09 16 31 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.15 0.72 6.46 -52.49 -0.34 0.39 16 33 H 0.17 0.78 8.06 -52.49 -0.42 0.36 16 34 H 0.41 3.55 9.06 45.56 0.41 3.96 16 35 H 0.40 5.80 7.88 -40.82 -0.32 5.48 16 36 H 0.08 1.86 7.37 -51.93 -0.38 1.48 16 37 H 0.07 1.54 7.69 -51.93 -0.40 1.14 16 38 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.05 0.72 7.49 -51.93 -0.39 0.33 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.09 2.34 6.16 -51.93 -0.32 2.02 16 46 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 375.57 15.07 5.66 5.66 Total: -1.00 -34.72 375.57 -7.37 -42.08 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -5.81 Total: 6.39 kcal Atomic # 6 Polarization: 10.32 SS G_CDS: -1.53 Total: 8.80 kcal Atomic # 7 Polarization: -58.50 SS G_CDS: -0.33 Total: -58.84 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.33 Total: -21.10 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.03 Total: 17.01 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.72 -7.37 -42.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024764512.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.643 kcal (2) G-P(sol) polarization free energy of solvation -34.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds