Wall clock time and date at job start Tue Mar 31 2020 18:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.36008 * 116.99491 * 2 1 4 4 C 1.35850 * 120.32183 * 0.02562 * 3 2 1 5 5 N 1.35438 * 120.77956 * 179.97438 * 4 3 2 6 6 H 0.96997 * 119.29206 * 179.97438 * 5 4 3 7 7 C 1.36427 * 121.40878 * 0.02562 * 5 4 3 8 8 C 1.48068 * 119.71849 * 179.97438 * 7 5 4 9 9 O 1.21518 * 120.00518 * 150.97361 * 8 7 5 10 10 N 1.34785 * 120.00147 * 330.97442 * 8 7 5 11 11 C 1.46925 * 120.62383 * 358.59308 * 10 8 7 12 12 C 1.52763 * 109.00616 * 233.58367 * 11 10 8 13 13 C 1.53044 * 109.38356 * 305.58998 * 12 11 10 14 14 C 1.53039 * 109.53658 * 61.23968 * 13 12 11 15 15 H 1.09007 * 109.52575 * 58.60485 * 14 13 12 16 16 N 1.46498 * 109.49749 * 178.68189 * 14 13 12 17 17 C 1.46498 * 119.99732 * 59.84186 * 16 14 13 18 18 C 1.36941 * 120.00169 * 239.83761 * 16 14 13 19 19 H 1.08003 * 119.99846 * 23.95179 * 18 16 14 20 20 C 1.38810 * 120.00179 * 203.95205 * 18 16 14 21 21 N 1.31625 * 119.99795 * 10.78673 * 20 18 16 22 22 Si 1.86795 * 120.00285 * 190.78989 * 20 18 16 23 23 H 1.48509 * 109.47053 * 89.99535 * 22 20 18 24 24 H 1.48491 * 109.47360 * 209.99863 * 22 20 18 25 25 H 1.48502 * 109.47153 * 330.00048 * 22 20 18 26 26 C 1.46925 * 120.63418 * 178.87293 * 10 8 7 27 27 C 1.36182 * 120.56272 * 359.68654 * 7 5 4 28 28 C 1.41584 * 120.30645 * 180.02562 * 3 2 1 29 29 O 1.22256 * 120.65883 * 359.97438 * 28 3 2 30 30 H 1.08997 * 109.46962 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46807 * 300.00055 * 1 2 3 32 32 H 1.08995 * 109.47211 * 59.99648 * 1 2 3 33 33 H 1.08000 * 119.60602 * 0.02562 * 4 3 2 34 34 H 1.08997 * 109.59386 * 353.41917 * 11 10 8 35 35 H 1.09005 * 109.58717 * 113.84667 * 11 10 8 36 36 H 1.08998 * 109.56849 * 185.55631 * 12 11 10 37 37 H 1.09003 * 109.38649 * 65.51878 * 12 11 10 38 38 H 1.08992 * 109.46270 * 301.22153 * 13 12 11 39 39 H 1.08998 * 109.45904 * 181.25844 * 13 12 11 40 40 H 1.08997 * 109.47703 * 95.26411 * 17 16 14 41 41 H 1.09007 * 109.46682 * 215.26261 * 17 16 14 42 42 H 1.08991 * 109.47284 * 335.25782 * 17 16 14 43 43 H 0.97004 * 119.99750 * 179.97438 * 21 20 18 44 44 H 1.08999 * 109.58803 * 246.15614 * 26 10 8 45 45 H 1.09007 * 109.58371 * 6.58200 * 26 10 8 46 46 H 1.08002 * 120.40039 * 180.28314 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.3129 2.3553 0.0005 5 7 1.9180 3.5670 0.0010 6 1 1.3732 4.3695 0.0010 7 6 3.2773 3.6828 0.0006 8 6 3.8995 5.0265 0.0006 9 8 4.9900 5.1912 0.5108 10 7 3.2563 6.0670 -0.5653 11 6 1.9513 5.8775 -1.2131 12 6 2.0176 6.4285 -2.6364 13 6 2.4949 7.8821 -2.5966 14 6 3.8973 7.9438 -1.9870 15 1 4.5791 7.3334 -2.5792 16 7 4.3659 9.3317 -1.9781 17 6 3.6140 10.3541 -1.2464 18 6 5.5070 9.6735 -2.6538 19 1 5.8468 9.0676 -3.4808 20 6 6.2269 10.7985 -2.2758 21 7 5.9414 11.4142 -1.1480 22 14 7.6008 11.4386 -3.3675 23 1 7.0482 12.4221 -4.3333 24 1 8.6344 12.0961 -2.5282 25 1 8.2120 10.3065 -4.1091 26 6 3.8496 7.4111 -0.5515 27 6 4.0669 2.5733 0.0059 28 6 3.4599 1.2937 -0.0005 29 8 4.1431 0.2798 -0.0006 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 0.2344 2.2973 0.0014 34 1 1.7099 4.8151 -1.2450 35 1 1.1841 6.4119 -0.6528 36 1 1.0285 6.3828 -3.0921 37 1 2.7164 5.8321 -3.2231 38 1 1.8089 8.4730 -1.9898 39 1 2.5213 8.2835 -3.6096 40 1 4.0444 10.4804 -0.2530 41 1 3.6648 11.2992 -1.7872 42 1 2.5732 10.0436 -1.1546 43 1 6.4448 12.2002 -0.8836 44 1 3.2405 8.0731 0.0640 45 1 4.8605 7.3600 -0.1469 46 1 5.1427 2.6681 0.0101 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027492150.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:18 Heat of formation + Delta-G solvation = -7.453241 kcal Electronic energy + Delta-G solvation = -29602.482631 eV Core-core repulsion = 25495.705700 eV Total energy + Delta-G solvation = -4106.776931 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.90883 -40.14275 -38.42726 -37.85796 -37.71092 -35.31970 -32.67990 -31.84540 -31.62059 -30.97040 -28.96768 -27.93688 -26.15576 -26.09170 -24.12457 -23.66698 -23.23371 -21.90094 -20.99520 -19.48976 -18.84130 -18.32224 -17.45420 -16.91244 -16.60947 -16.41987 -16.13409 -15.57441 -15.39466 -14.97746 -14.71073 -14.55497 -14.41984 -14.26266 -13.90964 -13.73171 -13.56787 -13.29900 -13.02310 -12.97768 -12.72974 -12.45986 -12.04718 -11.90519 -11.76553 -11.32404 -11.16764 -10.88022 -10.77732 -10.56600 -10.51035 -10.32679 -10.28794 -9.93467 -9.87439 -9.70089 -9.64260 -8.78184 -8.57516 -7.91741 -6.85634 -5.80419 -3.29315 0.53706 0.90492 2.23023 2.51844 2.82713 2.93583 3.34917 3.41744 3.42986 3.48423 3.87032 4.11805 4.35459 4.37196 4.47692 4.63631 4.73301 4.77279 4.78690 4.95865 5.08375 5.20078 5.25815 5.27901 5.34324 5.48219 5.55799 5.67964 5.75458 5.88363 5.91713 6.02353 6.15027 6.23426 6.31151 6.36685 6.41430 6.61729 6.75041 6.79761 6.88634 7.19699 7.27265 7.63368 7.73926 7.81635 7.86157 8.31551 9.14731 9.76000 10.24082 11.23730 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022524 B = 0.002651 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.803184 B =10561.137041 C =11161.210990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.288 6.288 3 C -0.032 4.032 4 C 0.020 3.980 5 N -0.570 5.570 6 H 0.429 0.571 7 C 0.133 3.867 8 C 0.550 3.450 9 O -0.501 6.501 10 N -0.596 5.596 11 C 0.069 3.931 12 C -0.129 4.129 13 C -0.135 4.135 14 C 0.168 3.832 15 H 0.067 0.933 16 N -0.590 5.590 17 C 0.160 3.840 18 C -0.260 4.260 19 H 0.069 0.931 20 C 0.006 3.994 21 N -0.905 5.905 22 Si 0.907 3.093 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.279 1.279 26 C 0.096 3.904 27 C -0.217 4.217 28 C 0.402 3.598 29 O -0.497 6.497 30 H 0.102 0.898 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.170 0.830 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.032 0.968 41 H 0.043 0.957 42 H -0.001 1.001 43 H 0.254 0.746 44 H 0.068 0.932 45 H 0.097 0.903 46 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.416 -14.637 1.359 23.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.200 6.200 3 C -0.083 4.083 4 C -0.106 4.106 5 N -0.191 5.191 6 H 0.274 0.726 7 C 0.021 3.979 8 C 0.334 3.666 9 O -0.374 6.374 10 N -0.330 5.330 11 C -0.055 4.055 12 C -0.168 4.168 13 C -0.174 4.174 14 C 0.058 3.942 15 H 0.086 0.914 16 N -0.311 5.311 17 C 0.015 3.985 18 C -0.389 4.389 19 H 0.087 0.913 20 C -0.193 4.193 21 N -0.550 5.550 22 Si 0.737 3.263 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.204 1.204 26 C -0.026 4.026 27 C -0.244 4.244 28 C 0.291 3.709 29 O -0.380 6.380 30 H 0.121 0.879 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.187 0.813 34 H 0.110 0.890 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.050 0.950 41 H 0.061 0.939 42 H 0.018 0.982 43 H 0.064 0.936 44 H 0.087 0.913 45 H 0.115 0.885 46 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -17.278 -15.088 1.729 23.003 hybrid contribution -0.029 1.049 -0.485 1.156 sum -17.307 -14.039 1.244 22.320 Atomic orbital electron populations 1.23134 0.79181 1.04514 1.00917 1.86285 1.20316 1.24368 1.89028 1.20440 0.94815 0.84660 1.08375 1.21696 0.98810 0.84452 1.05681 1.41938 1.05394 1.08817 1.62975 0.72572 1.20470 0.82827 0.95999 0.98626 1.18013 0.85651 0.82661 0.80246 1.90892 1.19117 1.82761 1.44623 1.48382 1.20269 1.09657 1.54730 1.22454 0.85407 1.01811 0.95779 1.21800 1.01938 0.98351 0.94674 1.22118 0.99119 0.93945 1.02247 1.20648 0.93456 0.87678 0.92404 0.91448 1.43928 1.27010 1.00686 1.59484 1.20827 0.89391 0.91396 0.96854 1.19218 1.00882 1.09950 1.08852 0.91315 1.25090 0.98083 0.99848 0.96299 1.70048 1.42317 1.21608 1.20982 0.86213 0.81591 0.78841 0.79639 1.21451 1.21630 1.20385 1.22791 1.00106 0.78597 1.01155 1.22450 1.02226 0.90343 1.09361 1.16795 0.86108 0.89788 0.78193 1.90857 1.65733 1.37542 1.43891 0.87916 0.92765 0.92700 0.81343 0.89043 0.90395 0.90802 0.91313 0.92072 0.91317 0.94968 0.93866 0.98243 0.93602 0.91345 0.88460 0.81526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.81 101.05 0.99 1.08 16 2 O -0.29 -3.18 10.33 -35.59 -0.37 -3.54 16 3 C -0.03 -0.35 6.71 -39.16 -0.26 -0.61 16 4 C 0.02 0.14 10.22 -16.82 -0.17 -0.03 16 5 N -0.57 -4.15 3.82 -9.58 -0.04 -4.19 16 6 H 0.43 2.01 5.44 -40.82 -0.22 1.79 16 7 C 0.13 1.51 6.23 -82.53 -0.51 1.00 16 8 C 0.55 7.81 7.54 -12.22 -0.09 7.72 16 9 O -0.50 -9.28 16.03 5.35 0.09 -9.19 16 10 N -0.60 -7.69 2.98 -174.06 -0.52 -8.21 16 11 C 0.07 0.58 4.92 -3.93 -0.02 0.56 16 12 C -0.13 -1.26 6.06 -26.83 -0.16 -1.42 16 13 C -0.13 -1.89 5.13 -26.69 -0.14 -2.03 16 14 C 0.17 3.07 2.74 -67.81 -0.19 2.88 16 15 H 0.07 1.33 7.87 -51.93 -0.41 0.93 16 16 N -0.59 -13.66 2.81 -173.35 -0.49 -14.14 16 17 C 0.16 3.61 7.91 59.85 0.47 4.08 16 18 C -0.26 -6.84 9.58 -15.06 -0.14 -6.98 16 19 H 0.07 1.79 7.82 -52.48 -0.41 1.38 16 20 C 0.01 0.16 5.15 -17.43 -0.09 0.07 16 21 N -0.91 -25.56 10.65 55.49 0.59 -24.97 16 22 Si 0.91 21.48 29.57 -169.99 -5.03 16.45 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 C 0.10 1.63 5.80 -3.71 -0.02 1.61 16 27 C -0.22 -2.91 9.52 -39.03 -0.37 -3.28 16 28 C 0.40 5.87 6.78 -37.02 -0.25 5.62 16 29 O -0.50 -9.23 17.71 -11.14 -0.20 -9.43 16 30 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.18 7.66 -51.93 -0.40 -0.21 16 32 H 0.05 0.18 7.66 -51.93 -0.40 -0.22 16 33 H 0.17 0.43 6.21 -52.49 -0.33 0.11 16 34 H 0.09 0.56 4.01 -54.32 -0.22 0.34 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.84 6.71 -51.93 -0.35 0.49 16 39 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.03 0.80 7.32 -51.93 -0.38 0.42 16 41 H 0.04 1.07 7.35 -51.93 -0.38 0.69 16 42 H 0.00 -0.02 6.45 -51.93 -0.34 -0.35 16 43 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 44 H 0.07 1.14 7.51 -51.93 -0.39 0.75 16 45 H 0.10 2.00 7.00 -51.92 -0.36 1.64 16 46 H 0.17 2.37 7.84 -52.49 -0.41 1.96 16 LS Contribution 365.20 15.07 5.50 5.50 Total: -1.00 -35.40 365.20 -7.65 -43.05 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -6.24 Total: -1.59 kcal Atomic # 6 Polarization: 11.21 SS G_CDS: -0.96 Total: 10.25 kcal Atomic # 7 Polarization: -51.06 SS G_CDS: -0.45 Total: -51.51 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -0.48 Total: -22.17 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.40 -7.65 -43.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027492150.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.601 kcal (2) G-P(sol) polarization free energy of solvation -35.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds