Wall clock time and date at job start Tue Mar 31 2020 18:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.36008 * 116.99491 * 2 1 4 4 C 1.35850 * 120.32183 * 0.02562 * 3 2 1 5 5 N 1.35438 * 120.77956 * 179.97438 * 4 3 2 6 6 H 0.96997 * 119.29206 * 179.97438 * 5 4 3 7 7 C 1.36427 * 121.40878 * 0.02562 * 5 4 3 8 8 C 1.48068 * 119.71849 * 179.97438 * 7 5 4 9 9 O 1.21518 * 120.00518 * 150.97361 * 8 7 5 10 10 N 1.34785 * 120.00147 * 330.97442 * 8 7 5 11 11 C 1.46925 * 120.62383 * 358.59308 * 10 8 7 12 12 C 1.52763 * 109.00616 * 233.58367 * 11 10 8 13 13 C 1.53044 * 109.38356 * 305.58998 * 12 11 10 14 14 C 1.53039 * 109.53658 * 61.23968 * 13 12 11 15 15 H 1.09007 * 109.52575 * 58.60485 * 14 13 12 16 16 N 1.46498 * 109.49749 * 178.68189 * 14 13 12 17 17 C 1.46498 * 119.99732 * 59.84186 * 16 14 13 18 18 C 1.36941 * 120.00169 * 239.83761 * 16 14 13 19 19 H 1.08003 * 119.99846 * 23.95179 * 18 16 14 20 20 C 1.38810 * 120.00179 * 203.95205 * 18 16 14 21 21 N 1.31625 * 119.99795 * 10.78673 * 20 18 16 22 22 Si 1.86795 * 120.00285 * 190.78989 * 20 18 16 23 23 H 1.48509 * 109.47053 * 89.99535 * 22 20 18 24 24 H 1.48491 * 109.47360 * 209.99863 * 22 20 18 25 25 H 1.48502 * 109.47153 * 330.00048 * 22 20 18 26 26 C 1.46925 * 120.63418 * 178.87293 * 10 8 7 27 27 C 1.36182 * 120.56272 * 359.68654 * 7 5 4 28 28 C 1.41584 * 120.30645 * 180.02562 * 3 2 1 29 29 O 1.22256 * 120.65883 * 359.97438 * 28 3 2 30 30 H 1.08997 * 109.46962 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46807 * 300.00055 * 1 2 3 32 32 H 1.08995 * 109.47211 * 59.99648 * 1 2 3 33 33 H 1.08000 * 119.60602 * 0.02562 * 4 3 2 34 34 H 1.08997 * 109.59386 * 353.41917 * 11 10 8 35 35 H 1.09005 * 109.58717 * 113.84667 * 11 10 8 36 36 H 1.08998 * 109.56849 * 185.55631 * 12 11 10 37 37 H 1.09003 * 109.38649 * 65.51878 * 12 11 10 38 38 H 1.08992 * 109.46270 * 301.22153 * 13 12 11 39 39 H 1.08998 * 109.45904 * 181.25844 * 13 12 11 40 40 H 1.08997 * 109.47703 * 95.26411 * 17 16 14 41 41 H 1.09007 * 109.46682 * 215.26261 * 17 16 14 42 42 H 1.08991 * 109.47284 * 335.25782 * 17 16 14 43 43 H 0.97004 * 119.99750 * 179.97438 * 21 20 18 44 44 H 1.08999 * 109.58803 * 246.15614 * 26 10 8 45 45 H 1.09007 * 109.58371 * 6.58200 * 26 10 8 46 46 H 1.08002 * 120.40039 * 180.28314 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.3129 2.3553 0.0005 5 7 1.9180 3.5670 0.0010 6 1 1.3732 4.3695 0.0010 7 6 3.2773 3.6828 0.0006 8 6 3.8995 5.0265 0.0006 9 8 4.9900 5.1912 0.5108 10 7 3.2563 6.0670 -0.5653 11 6 1.9513 5.8775 -1.2131 12 6 2.0176 6.4285 -2.6364 13 6 2.4949 7.8821 -2.5966 14 6 3.8973 7.9438 -1.9870 15 1 4.5791 7.3334 -2.5792 16 7 4.3659 9.3317 -1.9781 17 6 3.6140 10.3541 -1.2464 18 6 5.5070 9.6735 -2.6538 19 1 5.8468 9.0676 -3.4808 20 6 6.2269 10.7985 -2.2758 21 7 5.9414 11.4142 -1.1480 22 14 7.6008 11.4386 -3.3675 23 1 7.0482 12.4221 -4.3333 24 1 8.6344 12.0961 -2.5282 25 1 8.2120 10.3065 -4.1091 26 6 3.8496 7.4111 -0.5515 27 6 4.0669 2.5733 0.0059 28 6 3.4599 1.2937 -0.0005 29 8 4.1431 0.2798 -0.0006 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 0.2344 2.2973 0.0014 34 1 1.7099 4.8151 -1.2450 35 1 1.1841 6.4119 -0.6528 36 1 1.0285 6.3828 -3.0921 37 1 2.7164 5.8321 -3.2231 38 1 1.8089 8.4730 -1.9898 39 1 2.5213 8.2835 -3.6096 40 1 4.0444 10.4804 -0.2530 41 1 3.6648 11.2992 -1.7872 42 1 2.5732 10.0436 -1.1546 43 1 6.4448 12.2002 -0.8836 44 1 3.2405 8.0731 0.0640 45 1 4.8605 7.3600 -0.1469 46 1 5.1427 2.6681 0.0101 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027492150.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:17 Heat of formation + Delta-G solvation = -32.877424 kcal Electronic energy + Delta-G solvation = -29603.585106 eV Core-core repulsion = 25495.705700 eV Total energy + Delta-G solvation = -4107.879406 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.85801 -41.17025 -39.31787 -38.96694 -38.85480 -36.88903 -34.13636 -32.96889 -32.81736 -32.06830 -30.36981 -28.41231 -28.03970 -27.21705 -25.50859 -24.71787 -24.17835 -23.15543 -22.08913 -20.71493 -19.80132 -19.26774 -18.79170 -18.39004 -17.54197 -17.38595 -17.16812 -16.86400 -16.41095 -16.37934 -15.66657 -15.61950 -15.49154 -15.24445 -15.13434 -15.10884 -14.70198 -14.41620 -14.36621 -14.11736 -13.89257 -13.75167 -13.55356 -12.91834 -12.82733 -12.50978 -12.36370 -12.25446 -12.21703 -12.14861 -12.10729 -11.86843 -11.72630 -11.39794 -11.36457 -10.74362 -10.66642 -10.55601 -9.89992 -8.78141 -8.76581 -7.85182 -5.35129 -0.50700 0.11926 1.31002 1.35117 1.45029 1.45383 1.53580 1.83413 2.31164 2.48187 2.51399 2.93878 3.28340 3.52542 3.53051 3.65054 3.78005 3.87593 3.98263 4.00567 4.14704 4.32757 4.35859 4.41719 4.47426 4.52292 4.55984 4.62967 4.73147 4.80231 4.86368 4.90272 4.98608 4.99441 5.14505 5.25700 5.31350 5.39625 5.42484 5.56885 5.62827 5.73929 5.76000 6.08662 6.28684 6.31771 6.71067 6.89138 7.14226 7.85795 8.26310 9.16145 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022524 B = 0.002651 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.803184 B =10561.137041 C =11161.210990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.324 6.324 3 C -0.057 4.057 4 C 0.071 3.929 5 N -0.538 5.538 6 H 0.449 0.551 7 C 0.155 3.845 8 C 0.549 3.451 9 O -0.555 6.555 10 N -0.589 5.589 11 C 0.062 3.938 12 C -0.122 4.122 13 C -0.124 4.124 14 C 0.163 3.837 15 H 0.041 0.959 16 N -0.607 5.607 17 C 0.176 3.824 18 C -0.264 4.264 19 H 0.064 0.936 20 C -0.049 4.049 21 N -0.934 5.934 22 Si 0.965 3.035 23 H -0.282 1.282 24 H -0.296 1.296 25 H -0.274 1.274 26 C 0.112 3.888 27 C -0.237 4.237 28 C 0.381 3.619 29 O -0.568 6.568 30 H 0.109 0.891 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.234 0.766 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.057 0.943 38 H 0.074 0.926 39 H 0.056 0.944 40 H 0.002 0.998 41 H 0.013 0.987 42 H 0.044 0.956 43 H 0.248 0.752 44 H 0.078 0.922 45 H 0.049 0.951 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.823 -15.001 0.607 28.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.237 6.237 3 C -0.107 4.107 4 C -0.057 4.057 5 N -0.160 5.160 6 H 0.299 0.701 7 C 0.040 3.960 8 C 0.335 3.665 9 O -0.432 6.432 10 N -0.321 5.321 11 C -0.059 4.059 12 C -0.160 4.160 13 C -0.163 4.163 14 C 0.055 3.945 15 H 0.060 0.940 16 N -0.330 5.330 17 C 0.032 3.968 18 C -0.395 4.395 19 H 0.082 0.918 20 C -0.245 4.245 21 N -0.581 5.581 22 Si 0.793 3.207 23 H -0.208 1.208 24 H -0.223 1.223 25 H -0.199 1.199 26 C -0.012 4.012 27 C -0.264 4.264 28 C 0.276 3.724 29 O -0.458 6.458 30 H 0.128 0.872 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.250 0.750 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.076 0.924 38 H 0.093 0.907 39 H 0.074 0.926 40 H 0.020 0.980 41 H 0.032 0.968 42 H 0.062 0.938 43 H 0.057 0.943 44 H 0.097 0.903 45 H 0.068 0.932 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -22.796 -15.439 0.941 27.548 hybrid contribution 1.502 1.177 -0.281 1.929 sum -21.294 -14.262 0.661 25.637 Atomic orbital electron populations 1.23543 0.76077 1.06095 1.03267 1.86246 1.23551 1.24502 1.89434 1.20077 0.93305 0.86517 1.10777 1.22423 1.00860 0.82147 1.00307 1.42059 1.03731 1.10385 1.59793 0.70091 1.19799 0.84456 0.93375 0.98321 1.18328 0.85013 0.83609 0.79550 1.90880 1.21644 1.83651 1.46990 1.48332 1.21705 1.07650 1.54394 1.22941 0.83505 1.04269 0.95215 1.21801 1.03939 0.94657 0.95652 1.21950 0.95760 0.97524 1.01108 1.20836 0.95752 0.84791 0.93075 0.94018 1.44128 1.26462 1.02960 1.59432 1.20549 0.91395 0.90345 0.94541 1.19486 1.01603 1.09594 1.08797 0.91776 1.25778 1.00481 1.00600 0.97622 1.70203 1.43446 1.21963 1.22438 0.85304 0.79034 0.78256 0.78075 1.20826 1.22289 1.19868 1.22217 0.98274 0.80906 0.99821 1.22231 1.01675 0.91215 1.11314 1.17247 0.88274 0.89040 0.77812 1.90811 1.67371 1.39094 1.48546 0.87228 0.90314 0.90003 0.74986 0.86231 0.86001 0.86192 0.92439 0.90717 0.92556 0.97973 0.96823 0.93818 0.94251 0.90346 0.93249 0.84101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.02 9.81 113.37 1.11 1.13 16 2 O -0.32 -6.48 10.33 -78.50 -0.81 -7.29 16 3 C -0.06 -1.12 6.71 22.54 0.15 -0.97 16 4 C 0.07 0.53 10.22 83.58 0.85 1.39 16 5 N -0.54 -4.83 3.82 -184.22 -0.70 -5.53 16 6 H 0.45 0.72 5.44 -92.71 -0.50 0.22 16 7 C 0.15 3.23 6.23 40.56 0.25 3.48 16 8 C 0.55 15.22 7.54 86.85 0.65 15.88 16 9 O -0.55 -21.67 16.03 -3.77 -0.06 -21.74 16 10 N -0.59 -13.75 2.98 -822.88 -2.45 -16.20 16 11 C 0.06 0.65 4.92 86.22 0.42 1.08 16 12 C -0.12 -1.72 6.06 30.53 0.19 -1.53 16 13 C -0.12 -3.05 5.13 30.62 0.16 -2.90 16 14 C 0.16 5.90 2.74 45.07 0.12 6.02 16 15 H 0.04 1.69 7.87 -2.38 -0.02 1.67 16 16 N -0.61 -28.49 2.81 -702.35 -1.98 -30.47 16 17 C 0.18 7.98 7.91 127.77 1.01 8.99 16 18 C -0.26 -14.30 9.58 84.03 0.81 -13.50 16 19 H 0.06 3.44 7.82 -2.91 -0.02 3.42 16 20 C -0.05 -2.74 5.15 84.86 0.44 -2.31 16 21 N -0.93 -54.60 10.65 21.65 0.23 -54.37 16 22 Si 0.96 45.30 29.57 68.60 2.03 47.33 16 23 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 24 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 25 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 26 C 0.11 3.74 5.80 86.36 0.50 4.25 16 27 C -0.24 -6.64 9.52 22.63 0.22 -6.42 16 28 C 0.38 11.55 6.78 23.93 0.16 11.71 16 29 O -0.57 -23.06 17.71 8.98 0.16 -22.90 16 30 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.08 0.05 7.66 -2.39 -0.02 0.03 16 32 H 0.08 0.01 7.66 -2.39 -0.02 0.00 16 33 H 0.23 -1.03 6.21 -2.91 -0.02 -1.05 16 34 H 0.12 0.57 4.01 -7.11 -0.03 0.54 16 35 H 0.12 0.46 8.14 -2.38 -0.02 0.44 16 36 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.07 1.67 6.71 -2.39 -0.02 1.65 16 39 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.00 0.10 7.32 -2.39 -0.02 0.08 16 41 H 0.01 0.66 7.35 -2.38 -0.02 0.65 16 42 H 0.04 1.55 6.45 -2.39 -0.02 1.53 16 43 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 44 H 0.08 2.48 7.51 -2.39 -0.02 2.46 16 45 H 0.05 2.14 7.00 -2.38 -0.02 2.12 16 46 H 0.14 4.56 7.84 -2.91 -0.02 4.54 16 Total: -1.00 -90.68 365.20 3.96 -86.72 By element: Atomic # 1 Polarization: -2.36 SS G_CDS: 0.50 Total: -1.86 kcal Atomic # 6 Polarization: 19.26 SS G_CDS: 7.05 Total: 26.31 kcal Atomic # 7 Polarization: -101.67 SS G_CDS: -4.90 Total: -106.57 kcal Atomic # 8 Polarization: -51.21 SS G_CDS: -0.71 Total: -51.93 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -90.68 3.96 -86.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027492150.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.841 kcal (2) G-P(sol) polarization free energy of solvation -90.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds