Wall clock time and date at job start Tue Mar 31 2020 18:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.36016 * 116.99467 * 2 1 4 4 C 1.35848 * 120.31478 * 0.02562 * 3 2 1 5 5 N 1.35447 * 120.77531 * 179.71994 * 4 3 2 6 6 H 0.96998 * 119.29572 * 180.25742 * 5 4 3 7 7 C 1.36430 * 121.40608 * 0.52458 * 5 4 3 8 8 C 1.48073 * 119.71723 * 179.75086 * 7 5 4 9 9 O 1.21513 * 120.00277 * 208.65132 * 8 7 5 10 10 N 1.34775 * 119.99769 * 28.64847 * 8 7 5 11 11 C 1.46931 * 120.63390 * 1.70609 * 10 8 7 12 12 C 1.53190 * 108.77544 * 126.38738 * 11 10 8 13 13 C 1.53039 * 109.31436 * 54.63967 * 12 11 10 14 14 C 1.53039 * 109.53890 * 298.63296 * 13 12 11 15 15 H 1.08998 * 109.49724 * 301.38316 * 14 13 12 16 16 N 1.46495 * 109.50354 * 181.31695 * 14 13 12 17 17 C 1.46503 * 119.99373 * 300.27749 * 16 14 13 18 18 C 1.36928 * 120.00461 * 119.99879 * 16 14 13 19 19 H 1.08004 * 120.00133 * 335.69135 * 18 16 14 20 20 C 1.38812 * 120.00308 * 155.69644 * 18 16 14 21 21 N 1.31615 * 119.99961 * 359.12826 * 20 18 16 22 22 Si 1.86803 * 120.00192 * 179.13396 * 20 18 16 23 23 H 1.48495 * 109.47049 * 89.99601 * 22 20 18 24 24 H 1.48493 * 109.47251 * 209.99677 * 22 20 18 25 25 H 1.48506 * 109.46784 * 329.99698 * 22 20 18 26 26 C 1.46924 * 120.63112 * 181.70442 * 10 8 7 27 27 C 1.36173 * 120.56517 * 359.48256 * 7 5 4 28 28 C 1.41579 * 120.30943 * 180.02562 * 3 2 1 29 29 O 1.22258 * 120.65775 * 0.04365 * 28 3 2 30 30 H 1.09003 * 109.47008 * 299.99642 * 1 2 3 31 31 H 1.08997 * 109.47040 * 60.00333 * 1 2 3 32 32 H 1.09001 * 109.46824 * 180.02562 * 1 2 3 33 33 H 1.08000 * 119.61186 * 359.97438 * 4 3 2 34 34 H 1.09004 * 109.58236 * 6.60246 * 11 10 8 35 35 H 1.08999 * 109.58954 * 246.18167 * 11 10 8 36 36 H 1.09001 * 109.50133 * 294.68563 * 12 11 10 37 37 H 1.09004 * 109.49848 * 174.58860 * 12 11 10 38 38 H 1.08994 * 109.46118 * 178.61169 * 13 12 11 39 39 H 1.09001 * 109.46259 * 58.64944 * 13 12 11 40 40 H 1.09007 * 109.46876 * 272.50351 * 17 16 14 41 41 H 1.08992 * 109.47555 * 32.50878 * 17 16 14 42 42 H 1.09003 * 109.47273 * 152.51075 * 17 16 14 43 43 H 0.96997 * 120.00271 * 180.02562 * 21 20 18 44 44 H 1.08996 * 109.59033 * 113.82394 * 26 10 8 45 45 H 1.09003 * 109.58583 * 353.39582 * 26 10 8 46 46 H 1.08000 * 120.40473 * 180.27933 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2120 0.0000 4 6 1.3128 2.3553 0.0005 5 7 1.9178 3.5671 0.0062 6 1 1.3730 4.3696 0.0103 7 6 3.2772 3.6830 0.0009 8 6 3.8993 5.0267 0.0019 9 8 4.9905 5.1914 -0.5067 10 7 3.2552 6.0670 0.5668 11 6 1.9522 5.8763 1.2185 12 6 2.0273 6.4336 2.6435 13 6 2.4981 7.8889 2.5937 14 6 3.8965 7.9537 1.9755 15 1 4.5841 7.3492 2.5670 16 7 4.3592 9.3435 1.9570 17 6 3.5971 10.3595 1.2268 18 6 5.5009 9.6941 2.6268 19 1 5.8428 9.0979 3.4600 20 6 6.2187 10.8158 2.2352 21 7 5.8115 11.5326 1.2093 22 14 7.7629 11.3078 3.1642 23 1 8.9418 10.6454 2.5508 24 1 7.9325 12.7815 3.0970 25 1 7.6417 10.8877 4.5834 26 6 3.8426 7.4135 0.5428 27 6 4.0668 2.5735 0.0003 28 6 3.4599 1.2938 -0.0005 29 8 4.1431 0.2799 -0.0018 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 0.2343 2.2973 0.0005 34 1 1.7135 4.8133 1.2539 35 1 1.1824 6.4073 0.6586 36 1 2.7324 5.8430 3.2284 37 1 1.0411 6.3858 3.1053 38 1 2.5287 8.2954 3.6045 39 1 1.8059 8.4740 1.9881 40 1 3.9284 10.3858 0.1886 41 1 2.5358 10.1137 1.2634 42 1 3.7601 11.3350 1.6850 43 1 6.3132 12.3162 0.9354 44 1 3.2270 8.0699 -0.0721 45 1 4.8513 7.3649 0.1325 46 1 5.1426 2.6683 0.0007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027492151.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:22 Heat of formation + Delta-G solvation = -5.605002 kcal Electronic energy + Delta-G solvation = -29604.488716 eV Core-core repulsion = 25497.791931 eV Total energy + Delta-G solvation = -4106.696785 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.91094 -40.14243 -38.42570 -37.86057 -37.70451 -35.32631 -32.69136 -31.84912 -31.61486 -30.96997 -28.93756 -27.93429 -26.15627 -26.09987 -24.11475 -23.66683 -23.23213 -21.89218 -20.99755 -19.48384 -18.83976 -18.32505 -17.45830 -16.93232 -16.61095 -16.41807 -16.13809 -15.57881 -15.39621 -14.99442 -14.71203 -14.55226 -14.41890 -14.25542 -13.89683 -13.70961 -13.57061 -13.30191 -13.02217 -12.97932 -12.71528 -12.47124 -12.01556 -11.90395 -11.76693 -11.33145 -11.18740 -10.87511 -10.78216 -10.54652 -10.41178 -10.33334 -10.28324 -9.95744 -9.89194 -9.70196 -9.65014 -8.77917 -8.54733 -7.92066 -6.85194 -5.81923 -3.29876 0.53298 0.90220 2.22849 2.51798 2.82171 2.93245 3.35269 3.41762 3.42006 3.48074 3.86820 4.11585 4.35251 4.37035 4.47173 4.63473 4.73221 4.77055 4.78773 4.95020 5.08255 5.19821 5.26114 5.27468 5.35892 5.47873 5.55904 5.68238 5.75609 5.88597 5.91815 6.02592 6.15335 6.23370 6.31210 6.36518 6.41487 6.66584 6.77612 6.80214 6.88401 7.19313 7.35137 7.64563 7.75698 7.81324 7.85634 8.34264 9.15964 9.75882 10.23947 11.22689 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022174 B = 0.002668 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.434829 B =10493.287150 C =11143.766974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.288 6.288 3 C -0.032 4.032 4 C 0.020 3.980 5 N -0.570 5.570 6 H 0.429 0.571 7 C 0.133 3.867 8 C 0.550 3.450 9 O -0.501 6.501 10 N -0.596 5.596 11 C 0.069 3.931 12 C -0.128 4.128 13 C -0.135 4.135 14 C 0.168 3.832 15 H 0.067 0.933 16 N -0.591 5.591 17 C 0.159 3.841 18 C -0.257 4.257 19 H 0.069 0.931 20 C 0.005 3.995 21 N -0.908 5.908 22 Si 0.908 3.092 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.097 3.903 27 C -0.217 4.217 28 C 0.402 3.598 29 O -0.497 6.497 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.102 0.898 33 H 0.170 0.830 34 H 0.093 0.907 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.061 0.939 40 H 0.015 0.985 41 H -0.008 1.008 42 H 0.069 0.931 43 H 0.254 0.746 44 H 0.069 0.931 45 H 0.096 0.904 46 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.084 -14.793 -1.331 23.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.200 6.200 3 C -0.083 4.083 4 C -0.106 4.106 5 N -0.191 5.191 6 H 0.274 0.726 7 C 0.021 3.979 8 C 0.334 3.666 9 O -0.374 6.374 10 N -0.330 5.330 11 C -0.055 4.055 12 C -0.167 4.167 13 C -0.175 4.175 14 C 0.058 3.942 15 H 0.085 0.915 16 N -0.313 5.313 17 C 0.015 3.985 18 C -0.386 4.386 19 H 0.087 0.913 20 C -0.193 4.193 21 N -0.553 5.553 22 Si 0.737 3.263 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.205 1.205 26 C -0.026 4.026 27 C -0.244 4.244 28 C 0.291 3.709 29 O -0.380 6.380 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.121 0.879 33 H 0.187 0.813 34 H 0.110 0.890 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.033 0.967 41 H 0.010 0.990 42 H 0.087 0.913 43 H 0.064 0.936 44 H 0.087 0.913 45 H 0.115 0.885 46 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -16.954 -15.231 -1.684 22.853 hybrid contribution 0.067 0.926 0.360 0.996 sum -16.887 -14.305 -1.324 22.171 Atomic orbital electron populations 1.23136 0.79178 1.04517 1.00918 1.86286 1.20319 1.24366 1.89029 1.20440 0.94814 0.84661 1.08373 1.21700 0.98814 0.84453 1.05666 1.41960 1.05398 1.08826 1.62958 0.72560 1.20469 0.82835 0.95993 0.98631 1.18009 0.85661 0.82674 0.80218 1.90889 1.19066 1.82772 1.44709 1.48371 1.20502 1.09520 1.54641 1.22552 0.85432 1.01798 0.95717 1.21871 1.01922 0.98306 0.94592 1.22111 0.99229 0.93918 1.02217 1.20644 0.93532 0.87652 0.92375 0.91484 1.43914 1.27034 1.00697 1.59654 1.20913 0.88600 0.93333 0.95646 1.19235 1.00242 1.10220 1.08936 0.91308 1.25126 0.98148 0.99087 0.96932 1.70046 1.39504 1.18492 1.27276 0.86208 0.83413 0.77437 0.79204 1.21220 1.21605 1.20493 1.22750 1.00131 0.78515 1.01233 1.22447 1.02214 0.90348 1.09368 1.16796 0.86110 0.89787 0.78191 1.90858 1.65733 1.37544 1.43891 0.92704 0.92756 0.87915 0.81338 0.89011 0.90361 0.91297 0.90836 0.91339 0.92033 0.96666 0.99016 0.91262 0.93576 0.91321 0.88519 0.81535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.81 101.05 0.99 1.08 16 2 O -0.29 -3.18 10.33 -35.62 -0.37 -3.54 16 3 C -0.03 -0.35 6.71 -39.17 -0.26 -0.61 16 4 C 0.02 0.14 10.22 -16.81 -0.17 -0.03 16 5 N -0.57 -4.16 3.82 -9.58 -0.04 -4.19 16 6 H 0.43 2.02 5.43 -40.82 -0.22 1.80 16 7 C 0.13 1.51 6.24 -82.53 -0.51 0.99 16 8 C 0.55 7.80 7.54 -12.23 -0.09 7.71 16 9 O -0.50 -9.26 16.03 5.35 0.09 -9.18 16 10 N -0.60 -7.70 2.97 -173.79 -0.52 -8.22 16 11 C 0.07 0.58 4.94 -3.71 -0.02 0.56 16 12 C -0.13 -1.26 6.08 -26.61 -0.16 -1.43 16 13 C -0.14 -1.91 5.11 -26.69 -0.14 -2.05 16 14 C 0.17 3.08 2.75 -67.81 -0.19 2.89 16 15 H 0.07 1.33 7.87 -51.93 -0.41 0.92 16 16 N -0.59 -13.75 2.82 -173.34 -0.49 -14.24 16 17 C 0.16 3.64 7.97 59.85 0.48 4.12 16 18 C -0.26 -6.76 9.60 -15.06 -0.14 -6.91 16 19 H 0.07 1.79 7.80 -52.48 -0.41 1.38 16 20 C 0.01 0.14 5.28 -17.43 -0.09 0.05 16 21 N -0.91 -25.50 10.27 55.49 0.57 -24.93 16 22 Si 0.91 21.46 29.55 -169.99 -5.02 16.43 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 C 0.10 1.63 5.80 -3.71 -0.02 1.61 16 27 C -0.22 -2.90 9.52 -39.03 -0.37 -3.28 16 28 C 0.40 5.86 6.78 -37.02 -0.25 5.61 16 29 O -0.50 -9.23 17.71 -11.14 -0.20 -9.42 16 30 H 0.05 0.18 7.66 -51.93 -0.40 -0.22 16 31 H 0.05 0.18 7.66 -51.93 -0.40 -0.21 16 32 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.17 0.44 6.21 -52.49 -0.33 0.11 16 34 H 0.09 0.56 4.02 -54.39 -0.22 0.34 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.06 0.86 6.72 -51.93 -0.35 0.51 16 40 H 0.01 0.37 7.83 -51.92 -0.41 -0.04 16 41 H -0.01 -0.17 6.45 -51.93 -0.33 -0.50 16 42 H 0.07 1.77 6.53 -51.93 -0.34 1.43 16 43 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 44 H 0.07 1.15 7.52 -51.93 -0.39 0.76 16 45 H 0.10 1.98 7.00 -51.93 -0.36 1.62 16 46 H 0.17 2.36 7.84 -52.49 -0.41 1.95 16 LS Contribution 364.72 15.07 5.50 5.50 Total: -1.00 -35.22 364.72 -7.66 -42.88 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -6.22 Total: -1.41 kcal Atomic # 6 Polarization: 11.28 SS G_CDS: -0.96 Total: 10.33 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: -0.47 Total: -51.58 kcal Atomic # 8 Polarization: -21.66 SS G_CDS: -0.48 Total: -22.14 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.22 -7.66 -42.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027492151.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.274 kcal (2) G-P(sol) polarization free energy of solvation -35.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds