Wall clock time and date at job start Tue Mar 31 2020 18:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.36016 * 116.99467 * 2 1 4 4 C 1.35848 * 120.31478 * 0.02562 * 3 2 1 5 5 N 1.35447 * 120.77531 * 179.71994 * 4 3 2 6 6 H 0.96998 * 119.29572 * 180.25742 * 5 4 3 7 7 C 1.36430 * 121.40608 * 0.52458 * 5 4 3 8 8 C 1.48073 * 119.71723 * 179.75086 * 7 5 4 9 9 O 1.21513 * 120.00277 * 208.65132 * 8 7 5 10 10 N 1.34775 * 119.99769 * 28.64847 * 8 7 5 11 11 C 1.46931 * 120.63390 * 1.70609 * 10 8 7 12 12 C 1.53190 * 108.77544 * 126.38738 * 11 10 8 13 13 C 1.53039 * 109.31436 * 54.63967 * 12 11 10 14 14 C 1.53039 * 109.53890 * 298.63296 * 13 12 11 15 15 H 1.08998 * 109.49724 * 301.38316 * 14 13 12 16 16 N 1.46495 * 109.50354 * 181.31695 * 14 13 12 17 17 C 1.46503 * 119.99373 * 300.27749 * 16 14 13 18 18 C 1.36928 * 120.00461 * 119.99879 * 16 14 13 19 19 H 1.08004 * 120.00133 * 335.69135 * 18 16 14 20 20 C 1.38812 * 120.00308 * 155.69644 * 18 16 14 21 21 N 1.31615 * 119.99961 * 359.12826 * 20 18 16 22 22 Si 1.86803 * 120.00192 * 179.13396 * 20 18 16 23 23 H 1.48495 * 109.47049 * 89.99601 * 22 20 18 24 24 H 1.48493 * 109.47251 * 209.99677 * 22 20 18 25 25 H 1.48506 * 109.46784 * 329.99698 * 22 20 18 26 26 C 1.46924 * 120.63112 * 181.70442 * 10 8 7 27 27 C 1.36173 * 120.56517 * 359.48256 * 7 5 4 28 28 C 1.41579 * 120.30943 * 180.02562 * 3 2 1 29 29 O 1.22258 * 120.65775 * 0.04365 * 28 3 2 30 30 H 1.09003 * 109.47008 * 299.99642 * 1 2 3 31 31 H 1.08997 * 109.47040 * 60.00333 * 1 2 3 32 32 H 1.09001 * 109.46824 * 180.02562 * 1 2 3 33 33 H 1.08000 * 119.61186 * 359.97438 * 4 3 2 34 34 H 1.09004 * 109.58236 * 6.60246 * 11 10 8 35 35 H 1.08999 * 109.58954 * 246.18167 * 11 10 8 36 36 H 1.09001 * 109.50133 * 294.68563 * 12 11 10 37 37 H 1.09004 * 109.49848 * 174.58860 * 12 11 10 38 38 H 1.08994 * 109.46118 * 178.61169 * 13 12 11 39 39 H 1.09001 * 109.46259 * 58.64944 * 13 12 11 40 40 H 1.09007 * 109.46876 * 272.50351 * 17 16 14 41 41 H 1.08992 * 109.47555 * 32.50878 * 17 16 14 42 42 H 1.09003 * 109.47273 * 152.51075 * 17 16 14 43 43 H 0.96997 * 120.00271 * 180.02562 * 21 20 18 44 44 H 1.08996 * 109.59033 * 113.82394 * 26 10 8 45 45 H 1.09003 * 109.58583 * 353.39582 * 26 10 8 46 46 H 1.08000 * 120.40473 * 180.27933 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2120 0.0000 4 6 1.3128 2.3553 0.0005 5 7 1.9178 3.5671 0.0062 6 1 1.3730 4.3696 0.0103 7 6 3.2772 3.6830 0.0009 8 6 3.8993 5.0267 0.0019 9 8 4.9905 5.1914 -0.5067 10 7 3.2552 6.0670 0.5668 11 6 1.9522 5.8763 1.2185 12 6 2.0273 6.4336 2.6435 13 6 2.4981 7.8889 2.5937 14 6 3.8965 7.9537 1.9755 15 1 4.5841 7.3492 2.5670 16 7 4.3592 9.3435 1.9570 17 6 3.5971 10.3595 1.2268 18 6 5.5009 9.6941 2.6268 19 1 5.8428 9.0979 3.4600 20 6 6.2187 10.8158 2.2352 21 7 5.8115 11.5326 1.2093 22 14 7.7629 11.3078 3.1642 23 1 8.9418 10.6454 2.5508 24 1 7.9325 12.7815 3.0970 25 1 7.6417 10.8877 4.5834 26 6 3.8426 7.4135 0.5428 27 6 4.0668 2.5735 0.0003 28 6 3.4599 1.2938 -0.0005 29 8 4.1431 0.2799 -0.0018 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 0.2343 2.2973 0.0005 34 1 1.7135 4.8133 1.2539 35 1 1.1824 6.4073 0.6586 36 1 2.7324 5.8430 3.2284 37 1 1.0411 6.3858 3.1053 38 1 2.5287 8.2954 3.6045 39 1 1.8059 8.4740 1.9881 40 1 3.9284 10.3858 0.1886 41 1 2.5358 10.1137 1.2634 42 1 3.7601 11.3350 1.6850 43 1 6.3132 12.3162 0.9354 44 1 3.2270 8.0699 -0.0721 45 1 4.8513 7.3649 0.1325 46 1 5.1426 2.6683 0.0007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027492151.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:21 Heat of formation + Delta-G solvation = -30.759259 kcal Electronic energy + Delta-G solvation = -29605.579486 eV Core-core repulsion = 25497.791931 eV Total energy + Delta-G solvation = -4107.787556 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.85924 -41.16967 -39.31413 -38.96648 -38.85508 -36.89894 -34.15236 -32.95642 -32.81514 -32.06412 -30.34161 -28.41137 -28.05347 -27.22026 -25.49092 -24.71736 -24.17852 -23.15369 -22.09047 -20.71312 -19.80216 -19.27240 -18.80742 -18.39372 -17.54154 -17.38967 -17.17667 -16.87562 -16.41515 -16.37584 -15.64878 -15.60959 -15.48787 -15.24491 -15.11958 -15.10988 -14.70235 -14.41272 -14.36358 -14.12591 -13.87802 -13.71290 -13.58542 -12.95143 -12.81054 -12.50917 -12.36123 -12.25456 -12.16703 -12.14952 -12.11177 -11.87202 -11.71803 -11.40539 -11.37150 -10.74439 -10.64496 -10.55838 -9.90374 -8.78293 -8.74728 -7.86647 -5.34836 -0.50934 0.11733 1.30844 1.35299 1.44366 1.46197 1.53205 1.82812 2.30978 2.47496 2.51182 2.93608 3.28953 3.52721 3.53387 3.64815 3.77997 3.87915 3.98079 3.99726 4.14632 4.32435 4.35726 4.41587 4.46960 4.52176 4.55741 4.62894 4.74226 4.79842 4.86226 4.91282 4.98756 5.01145 5.14264 5.26485 5.35033 5.39907 5.42648 5.58309 5.60251 5.73615 5.80293 6.08337 6.28482 6.34652 6.70633 6.88962 7.15233 7.86239 8.26623 9.15740 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022174 B = 0.002668 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.434829 B =10493.287150 C =11143.766974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.324 6.324 3 C -0.057 4.057 4 C 0.070 3.930 5 N -0.538 5.538 6 H 0.449 0.551 7 C 0.155 3.845 8 C 0.549 3.451 9 O -0.554 6.554 10 N -0.589 5.589 11 C 0.061 3.939 12 C -0.121 4.121 13 C -0.125 4.125 14 C 0.163 3.837 15 H 0.042 0.958 16 N -0.610 5.610 17 C 0.176 3.824 18 C -0.262 4.262 19 H 0.066 0.934 20 C -0.049 4.049 21 N -0.935 5.935 22 Si 0.965 3.035 23 H -0.292 1.292 24 H -0.290 1.290 25 H -0.269 1.269 26 C 0.112 3.888 27 C -0.237 4.237 28 C 0.381 3.619 29 O -0.568 6.568 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.109 0.891 33 H 0.234 0.766 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.057 0.943 37 H 0.119 0.881 38 H 0.055 0.945 39 H 0.073 0.927 40 H -0.011 1.011 41 H 0.033 0.967 42 H 0.036 0.964 43 H 0.248 0.752 44 H 0.078 0.922 45 H 0.050 0.950 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.360 -15.224 -0.600 27.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.237 6.237 3 C -0.107 4.107 4 C -0.057 4.057 5 N -0.160 5.160 6 H 0.299 0.701 7 C 0.040 3.960 8 C 0.335 3.665 9 O -0.432 6.432 10 N -0.321 5.321 11 C -0.059 4.059 12 C -0.160 4.160 13 C -0.164 4.164 14 C 0.055 3.945 15 H 0.061 0.939 16 N -0.332 5.332 17 C 0.032 3.968 18 C -0.393 4.393 19 H 0.083 0.917 20 C -0.244 4.244 21 N -0.582 5.582 22 Si 0.793 3.207 23 H -0.219 1.219 24 H -0.217 1.217 25 H -0.194 1.194 26 C -0.012 4.012 27 C -0.264 4.264 28 C 0.276 3.724 29 O -0.458 6.458 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.128 0.872 33 H 0.250 0.750 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.076 0.924 37 H 0.137 0.863 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.008 0.992 41 H 0.051 0.949 42 H 0.055 0.945 43 H 0.058 0.942 44 H 0.096 0.904 45 H 0.068 0.932 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -22.338 -15.648 -0.918 27.289 hybrid contribution 1.555 1.081 0.165 1.901 sum -20.784 -14.567 -0.753 25.391 Atomic orbital electron populations 1.23544 0.76080 1.06097 1.03262 1.86247 1.23548 1.24500 1.89436 1.20079 0.93313 0.86511 1.10770 1.22425 1.00860 0.82154 1.00305 1.42081 1.03747 1.10386 1.59793 0.70099 1.19801 0.84453 0.93380 0.98338 1.18322 0.85026 0.83610 0.79515 1.90877 1.21570 1.83655 1.47049 1.48321 1.21929 1.07519 1.54323 1.23034 0.83569 1.04240 0.95100 1.21869 1.03904 0.94589 0.95618 1.21944 0.95943 0.97505 1.01008 1.20828 0.95771 0.84766 0.93091 0.93935 1.44107 1.26583 1.02949 1.59608 1.20614 0.90648 0.91985 0.93600 1.19506 1.01005 1.09813 1.08942 0.91670 1.25799 1.00803 0.99673 0.98146 1.70206 1.40421 1.18830 1.28750 0.85308 0.80058 0.76762 0.78564 1.21881 1.21665 1.19390 1.22182 0.98353 0.80804 0.99859 1.22229 1.01674 0.91202 1.11291 1.17247 0.88267 0.89047 0.77807 1.90811 1.67366 1.39095 1.48536 0.90010 0.90315 0.87224 0.75001 0.86180 0.86033 0.92373 0.86271 0.92626 0.90808 0.99241 0.94857 0.94472 0.94224 0.90429 0.93168 0.84074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.02 9.81 113.37 1.11 1.13 16 2 O -0.32 -6.48 10.33 -78.60 -0.81 -7.29 16 3 C -0.06 -1.12 6.71 22.54 0.15 -0.97 16 4 C 0.07 0.53 10.22 83.58 0.85 1.39 16 5 N -0.54 -4.85 3.82 -184.21 -0.70 -5.55 16 6 H 0.45 0.76 5.43 -92.71 -0.50 0.26 16 7 C 0.15 3.22 6.24 40.56 0.25 3.47 16 8 C 0.55 15.19 7.54 86.85 0.65 15.84 16 9 O -0.55 -21.58 16.03 -3.76 -0.06 -21.64 16 10 N -0.59 -13.77 2.97 -822.05 -2.44 -16.21 16 11 C 0.06 0.66 4.94 86.36 0.43 1.09 16 12 C -0.12 -1.73 6.08 30.67 0.19 -1.55 16 13 C -0.12 -3.11 5.11 30.62 0.16 -2.95 16 14 C 0.16 5.92 2.75 45.07 0.12 6.05 16 15 H 0.04 1.72 7.87 -2.39 -0.02 1.70 16 16 N -0.61 -28.70 2.82 -702.34 -1.98 -30.69 16 17 C 0.18 8.05 7.97 127.77 1.02 9.07 16 18 C -0.26 -14.16 9.60 84.03 0.81 -13.35 16 19 H 0.07 3.48 7.80 -2.91 -0.02 3.45 16 20 C -0.05 -2.73 5.28 84.86 0.45 -2.28 16 21 N -0.94 -54.27 10.27 21.65 0.22 -54.05 16 22 Si 0.96 45.26 29.55 68.60 2.03 47.29 16 23 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 24 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 25 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 26 C 0.11 3.76 5.80 86.37 0.50 4.26 16 27 C -0.24 -6.60 9.52 22.63 0.22 -6.39 16 28 C 0.38 11.52 6.78 23.93 0.16 11.69 16 29 O -0.57 -23.01 17.71 8.97 0.16 -22.85 16 30 H 0.08 0.01 7.66 -2.39 -0.02 0.00 16 31 H 0.08 0.05 7.66 -2.39 -0.02 0.04 16 32 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.23 -1.02 6.21 -2.91 -0.02 -1.03 16 34 H 0.12 0.59 4.02 -7.25 -0.03 0.56 16 35 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.07 1.69 6.72 -2.39 -0.02 1.67 16 40 H -0.01 -0.54 7.83 -2.38 -0.02 -0.56 16 41 H 0.03 1.22 6.45 -2.39 -0.02 1.20 16 42 H 0.04 1.92 6.53 -2.39 -0.02 1.90 16 43 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 44 H 0.08 2.48 7.52 -2.39 -0.02 2.46 16 45 H 0.05 2.16 7.00 -2.39 -0.02 2.14 16 46 H 0.14 4.55 7.84 -2.91 -0.02 4.53 16 Total: -1.00 -89.90 364.72 3.98 -85.92 By element: Atomic # 1 Polarization: -1.94 SS G_CDS: 0.50 Total: -1.44 kcal Atomic # 6 Polarization: 19.43 SS G_CDS: 7.07 Total: 26.50 kcal Atomic # 7 Polarization: -101.59 SS G_CDS: -4.91 Total: -106.50 kcal Atomic # 8 Polarization: -51.06 SS G_CDS: -0.71 Total: -51.78 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -89.90 3.98 -85.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027492151.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.161 kcal (2) G-P(sol) polarization free energy of solvation -89.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds