Wall clock time and date at job start Tue Mar 31 2020 18:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36939 * 120.00260 * 2 1 4 4 H 1.07997 * 119.99963 * 199.84161 * 3 2 1 5 5 C 1.38805 * 119.99992 * 19.83454 * 3 2 1 6 6 N 1.31620 * 120.00129 * 10.29668 * 5 3 2 7 7 Si 1.86796 * 120.00342 * 190.29665 * 5 3 2 8 8 H 1.48498 * 109.47462 * 89.99739 * 7 5 3 9 9 H 1.48495 * 109.47436 * 210.00387 * 7 5 3 10 10 H 1.48507 * 109.46733 * 330.00140 * 7 5 3 11 11 C 1.46504 * 120.00192 * 179.97438 * 2 1 3 12 12 H 1.08993 * 109.52714 * 180.08531 * 11 2 1 13 13 C 1.53080 * 109.61898 * 300.11190 * 11 2 1 14 14 C 1.53037 * 109.65471 * 181.16830 * 13 11 2 15 15 C 1.53189 * 109.31543 * 298.69498 * 14 13 11 16 16 N 1.46930 * 108.77368 * 54.63530 * 15 14 13 17 17 C 1.34779 * 120.62733 * 126.41215 * 16 15 14 18 18 O 1.21616 * 120.00237 * 355.00130 * 17 16 15 19 19 C 1.47384 * 119.99827 * 174.99377 * 17 16 15 20 20 C 1.47021 * 127.19234 * 325.57494 * 19 17 16 21 21 C 1.34174 * 105.95011 * 179.97438 * 20 19 17 22 22 O 1.34212 * 109.12926 * 359.97438 * 21 20 19 23 23 C 1.33661 * 110.90753 * 359.72749 * 22 21 20 24 24 C 1.50693 * 125.80227 * 180.28292 * 23 22 21 25 25 C 1.50695 * 109.47398 * 270.19127 * 24 23 22 26 26 N 1.34782 * 120.00189 * 180.02562 * 25 24 23 27 27 O 1.21286 * 120.00013 * 0.02562 * 25 24 23 28 28 C 1.46922 * 118.74042 * 306.39274 * 16 15 14 29 29 H 1.08992 * 109.47732 * 275.96718 * 1 2 3 30 30 H 1.09007 * 109.46763 * 35.96729 * 1 2 3 31 31 H 1.09001 * 109.47118 * 155.96054 * 1 2 3 32 32 H 0.96999 * 120.00288 * 179.97438 * 6 5 3 33 33 H 1.08993 * 109.34755 * 61.14103 * 13 11 2 34 34 H 1.09000 * 109.44936 * 301.25293 * 13 11 2 35 35 H 1.09007 * 109.49850 * 178.74558 * 14 13 11 36 36 H 1.09003 * 109.50401 * 58.65262 * 14 13 11 37 37 H 1.09001 * 109.58890 * 294.85499 * 15 14 13 38 38 H 1.08998 * 109.71087 * 174.49598 * 15 14 13 39 39 H 1.07998 * 127.02268 * 359.97178 * 20 19 17 40 40 H 1.08007 * 125.43662 * 180.02562 * 21 20 19 41 41 H 1.08997 * 109.47265 * 30.19298 * 24 23 22 42 42 H 1.09000 * 109.46963 * 150.19213 * 24 23 22 43 43 H 0.96998 * 119.99506 * 0.02562 * 26 25 24 44 44 H 0.96997 * 119.99636 * 179.97438 * 26 25 24 45 45 H 1.09000 * 109.58748 * 173.39205 * 28 16 15 46 46 H 1.08998 * 109.58868 * 293.67890 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1816 1.2136 -0.3175 5 6 1.5174 2.3524 0.4079 6 7 0.3351 2.2935 0.9832 7 14 2.3446 4.0057 0.1403 8 1 1.9488 4.5488 -1.1839 9 1 1.9237 4.9483 1.2078 10 1 3.8190 3.8344 0.1844 11 6 2.1975 -1.2687 0.0006 12 1 3.2692 -1.0706 0.0020 13 6 1.8280 -2.0750 1.2483 14 6 2.6147 -3.3876 1.2645 15 6 2.2466 -4.2143 0.0284 16 7 2.4655 -3.3944 -1.1711 17 6 3.2363 -3.8461 -2.1802 18 8 3.8315 -4.9005 -2.0659 19 6 3.3578 -3.0622 -3.4224 20 6 2.3187 -2.2404 -4.0599 21 6 2.8838 -1.7197 -5.1599 22 8 4.1538 -2.1451 -5.2454 23 6 4.4603 -2.9417 -4.2167 24 6 5.7952 -3.5987 -3.9778 25 6 5.8197 -4.9463 -4.6518 26 7 6.9206 -5.7199 -4.5719 27 8 4.8489 -5.3348 -5.2662 28 6 1.8278 -2.0731 -1.2497 29 1 -0.3634 0.1068 1.0220 30 1 -0.3633 0.8318 -0.6036 31 1 -0.3633 -0.9385 -0.4186 32 1 -0.1066 3.1086 1.2686 33 1 0.7600 -2.2918 1.2349 34 1 2.0697 -1.4958 2.1394 35 1 2.3664 -3.9495 2.1650 36 1 3.6830 -3.1718 1.2529 37 1 1.1983 -4.5078 0.0840 38 1 2.8734 -5.1048 -0.0183 39 1 1.3073 -2.0872 -3.7136 40 1 2.3948 -1.0624 -5.8638 41 1 6.5871 -2.9725 -4.3887 42 1 5.9512 -3.7254 -2.9065 43 1 7.6968 -5.4093 -4.0802 44 1 6.9361 -6.5874 -5.0055 45 1 2.1802 -1.5496 -2.1384 46 1 0.7455 -2.1922 -1.3008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027544484.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:14 Heat of formation + Delta-G solvation = -25.022532 kcal Electronic energy + Delta-G solvation = -30227.400409 eV Core-core repulsion = 26119.861617 eV Total energy + Delta-G solvation = -4107.538792 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.55453 -39.71379 -39.40209 -37.37939 -34.92683 -33.85141 -33.35350 -32.35408 -31.85251 -31.24399 -28.68129 -27.64351 -26.06112 -25.32509 -23.62094 -22.86519 -21.80894 -21.32428 -20.41305 -19.47228 -18.58347 -17.66016 -17.34852 -17.00013 -16.68734 -16.16542 -15.73891 -15.69020 -15.17353 -15.07447 -14.59812 -14.20618 -14.01970 -13.79081 -13.73086 -13.52257 -13.10414 -12.88730 -12.85178 -12.65695 -12.48328 -12.16273 -11.96499 -11.76582 -11.04816 -10.95848 -10.83446 -10.61222 -10.38232 -10.36489 -10.21229 -10.19361 -9.92364 -9.86394 -9.84170 -9.77561 -9.36232 -8.65554 -8.56461 -8.28339 -6.82167 -5.74217 -3.19853 1.45215 2.20500 2.52503 2.75292 3.13826 3.35728 3.36522 3.42611 3.43487 3.52441 4.36376 4.44526 4.71050 4.78302 4.87379 5.04575 5.15042 5.21275 5.30094 5.33571 5.43556 5.55825 5.57301 5.67429 5.70096 5.75397 5.92351 5.99156 6.10140 6.13689 6.24315 6.35341 6.40698 6.43232 6.58943 6.70328 6.80237 6.88441 6.98121 7.07783 7.10945 7.39796 7.65515 7.71654 7.80097 8.10835 8.34460 8.39549 9.20933 9.83302 10.30476 11.29932 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013379 B = 0.003677 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.265835 B = 7612.136125 C = 8724.561727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.594 5.594 3 C -0.253 4.253 4 H 0.069 0.931 5 C 0.002 3.998 6 N -0.910 5.910 7 Si 0.905 3.095 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.280 1.280 11 C 0.170 3.830 12 H 0.064 0.936 13 C -0.133 4.133 14 C -0.130 4.130 15 C 0.114 3.886 16 N -0.596 5.596 17 C 0.589 3.411 18 O -0.550 6.550 19 C -0.210 4.210 20 C -0.182 4.182 21 C -0.029 4.029 22 O -0.172 6.172 23 C 0.071 3.929 24 C -0.063 4.063 25 C 0.530 3.470 26 N -0.856 5.856 27 O -0.527 6.527 28 C 0.081 3.919 29 H 0.029 0.971 30 H 0.046 0.954 31 H -0.004 1.004 32 H 0.252 0.748 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.087 0.913 39 H 0.161 0.839 40 H 0.210 0.790 41 H 0.114 0.886 42 H 0.129 0.871 43 H 0.401 0.599 44 H 0.403 0.597 45 H 0.096 0.904 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.515 -12.214 -8.205 17.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.316 5.316 3 C -0.382 4.382 4 H 0.087 0.913 5 C -0.196 4.196 6 N -0.555 5.555 7 Si 0.736 3.264 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.206 1.206 11 C 0.060 3.940 12 H 0.082 0.918 13 C -0.173 4.173 14 C -0.169 4.169 15 C -0.008 4.008 16 N -0.328 5.328 17 C 0.378 3.622 18 O -0.430 6.430 19 C -0.214 4.214 20 C -0.201 4.201 21 C -0.095 4.095 22 O -0.068 6.068 23 C 0.018 3.982 24 C -0.102 4.102 25 C 0.314 3.686 26 N -0.420 5.420 27 O -0.402 6.402 28 C -0.043 4.043 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.014 0.986 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.106 0.894 39 H 0.179 0.821 40 H 0.226 0.774 41 H 0.132 0.868 42 H 0.147 0.853 43 H 0.229 0.771 44 H 0.233 0.767 45 H 0.114 0.886 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.146 -12.586 -8.648 17.800 hybrid contribution 0.333 0.943 0.245 1.029 sum 9.479 -11.644 -8.403 17.206 Atomic orbital electron populations 1.20819 0.82382 0.95157 0.99675 1.43918 1.01918 0.99925 1.85816 1.19247 0.96458 0.84874 1.37636 0.91294 1.24962 0.97354 0.98309 0.98981 1.70082 1.15521 1.26614 1.43308 0.86240 0.78806 0.84029 0.77370 1.21504 1.21768 1.20566 1.20560 0.96341 0.86224 0.90844 0.91796 1.22131 0.99519 0.94810 1.00805 1.21912 1.00940 0.97254 0.96782 1.21593 1.01110 0.94264 0.83874 1.47982 1.48778 1.18725 1.17337 1.17290 0.78604 0.84289 0.82012 1.90732 1.47046 1.23471 1.81775 1.21048 0.94962 1.05903 0.99488 1.22937 1.00768 1.00001 0.96431 1.23854 0.81790 1.03011 1.00879 1.83684 1.29847 1.51453 1.41782 1.21430 0.95706 0.94331 0.86736 1.20121 0.92350 0.93486 1.04275 1.20117 0.82588 0.86156 0.79740 1.43713 1.17291 1.22496 1.58525 1.90784 1.34014 1.73590 1.41807 1.22892 0.97442 0.81499 1.02467 0.95227 0.93494 0.98565 0.93773 0.92474 0.91558 0.91351 0.91887 0.91797 0.89449 0.82136 0.77393 0.86753 0.85330 0.77077 0.76651 0.88631 0.91729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.84 8.01 59.84 0.48 4.31 16 2 N -0.59 -14.02 2.83 -173.33 -0.49 -14.51 16 3 C -0.25 -6.65 9.65 -15.06 -0.15 -6.80 16 4 H 0.07 1.79 7.78 -52.49 -0.41 1.38 16 5 C 0.00 0.05 5.17 -17.43 -0.09 -0.04 16 6 N -0.91 -25.67 10.37 55.49 0.58 -25.09 16 7 Si 0.91 21.31 29.57 -169.99 -5.03 16.28 16 8 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 9 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 C 0.17 3.31 2.74 -67.79 -0.19 3.13 16 12 H 0.06 1.32 7.85 -51.93 -0.41 0.91 16 13 C -0.13 -2.32 5.15 -26.67 -0.14 -2.46 16 14 C -0.13 -1.85 6.08 -26.61 -0.16 -2.01 16 15 C 0.11 1.65 6.44 -3.71 -0.02 1.63 16 16 N -0.60 -9.66 2.97 -174.05 -0.52 -10.18 16 17 C 0.59 10.14 7.40 -12.54 -0.09 10.05 16 18 O -0.55 -10.32 15.51 5.26 0.08 -10.24 16 19 C -0.21 -3.38 5.52 -103.27 -0.57 -3.95 16 20 C -0.18 -2.63 8.66 -37.46 -0.32 -2.95 16 21 C -0.03 -0.37 12.03 29.30 0.35 -0.02 16 22 O -0.17 -2.41 10.52 7.64 0.08 -2.33 16 23 C 0.07 1.04 5.86 -34.97 -0.21 0.83 16 24 C -0.06 -0.69 5.64 -29.04 -0.16 -0.86 16 25 C 0.53 6.59 8.09 -10.99 -0.09 6.50 16 26 N -0.86 -6.47 8.87 31.22 0.28 -6.20 16 27 O -0.53 -9.19 16.87 5.55 0.09 -9.09 16 28 C 0.08 1.38 4.79 -3.71 -0.02 1.36 16 29 H 0.03 0.76 7.39 -51.93 -0.38 0.37 16 30 H 0.05 1.19 7.10 -51.92 -0.37 0.82 16 31 H 0.00 -0.08 6.37 -51.93 -0.33 -0.41 16 32 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 33 H 0.06 1.01 7.71 -51.93 -0.40 0.61 16 34 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.09 1.27 6.99 -51.93 -0.36 0.91 16 39 H 0.16 2.15 7.07 -52.49 -0.37 1.78 16 40 H 0.21 1.77 8.06 -52.48 -0.42 1.35 16 41 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.13 1.35 7.52 -51.93 -0.39 0.96 16 43 H 0.40 1.63 8.83 -40.82 -0.36 1.26 16 44 H 0.40 2.69 8.93 -40.82 -0.36 2.33 16 45 H 0.10 1.66 4.38 -51.93 -0.23 1.43 16 46 H 0.06 1.10 6.50 -51.93 -0.34 0.76 16 LS Contribution 371.60 15.07 5.60 5.60 Total: -1.00 -35.25 371.60 -7.09 -42.34 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -6.39 Total: 4.70 kcal Atomic # 6 Polarization: 10.10 SS G_CDS: -1.38 Total: 8.72 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: -0.15 Total: -55.98 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: 0.26 Total: -21.67 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.28 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.25 -7.09 -42.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027544484.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.317 kcal (2) G-P(sol) polarization free energy of solvation -35.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds