Wall clock time and date at job start Tue Mar 31 2020 18:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36939 * 120.00260 * 2 1 4 4 H 1.07997 * 119.99963 * 199.84161 * 3 2 1 5 5 C 1.38805 * 119.99992 * 19.83454 * 3 2 1 6 6 N 1.31620 * 120.00129 * 10.29668 * 5 3 2 7 7 Si 1.86796 * 120.00342 * 190.29665 * 5 3 2 8 8 H 1.48498 * 109.47462 * 89.99739 * 7 5 3 9 9 H 1.48495 * 109.47436 * 210.00387 * 7 5 3 10 10 H 1.48507 * 109.46733 * 330.00140 * 7 5 3 11 11 C 1.46504 * 120.00192 * 179.97438 * 2 1 3 12 12 H 1.08993 * 109.52714 * 180.08531 * 11 2 1 13 13 C 1.53080 * 109.61898 * 300.11190 * 11 2 1 14 14 C 1.53037 * 109.65471 * 181.16830 * 13 11 2 15 15 C 1.53189 * 109.31543 * 298.69498 * 14 13 11 16 16 N 1.46930 * 108.77368 * 54.63530 * 15 14 13 17 17 C 1.34779 * 120.62733 * 126.41215 * 16 15 14 18 18 O 1.21616 * 120.00237 * 355.00130 * 17 16 15 19 19 C 1.47384 * 119.99827 * 174.99377 * 17 16 15 20 20 C 1.47021 * 127.19234 * 325.57494 * 19 17 16 21 21 C 1.34174 * 105.95011 * 179.97438 * 20 19 17 22 22 O 1.34212 * 109.12926 * 359.97438 * 21 20 19 23 23 C 1.33661 * 110.90753 * 359.72749 * 22 21 20 24 24 C 1.50693 * 125.80227 * 180.28292 * 23 22 21 25 25 C 1.50695 * 109.47398 * 270.19127 * 24 23 22 26 26 N 1.34782 * 120.00189 * 180.02562 * 25 24 23 27 27 O 1.21286 * 120.00013 * 0.02562 * 25 24 23 28 28 C 1.46922 * 118.74042 * 306.39274 * 16 15 14 29 29 H 1.08992 * 109.47732 * 275.96718 * 1 2 3 30 30 H 1.09007 * 109.46763 * 35.96729 * 1 2 3 31 31 H 1.09001 * 109.47118 * 155.96054 * 1 2 3 32 32 H 0.96999 * 120.00288 * 179.97438 * 6 5 3 33 33 H 1.08993 * 109.34755 * 61.14103 * 13 11 2 34 34 H 1.09000 * 109.44936 * 301.25293 * 13 11 2 35 35 H 1.09007 * 109.49850 * 178.74558 * 14 13 11 36 36 H 1.09003 * 109.50401 * 58.65262 * 14 13 11 37 37 H 1.09001 * 109.58890 * 294.85499 * 15 14 13 38 38 H 1.08998 * 109.71087 * 174.49598 * 15 14 13 39 39 H 1.07998 * 127.02268 * 359.97178 * 20 19 17 40 40 H 1.08007 * 125.43662 * 180.02562 * 21 20 19 41 41 H 1.08997 * 109.47265 * 30.19298 * 24 23 22 42 42 H 1.09000 * 109.46963 * 150.19213 * 24 23 22 43 43 H 0.96998 * 119.99506 * 0.02562 * 26 25 24 44 44 H 0.96997 * 119.99636 * 179.97438 * 26 25 24 45 45 H 1.09000 * 109.58748 * 173.39205 * 28 16 15 46 46 H 1.08998 * 109.58868 * 293.67890 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1816 1.2136 -0.3175 5 6 1.5174 2.3524 0.4079 6 7 0.3351 2.2935 0.9832 7 14 2.3446 4.0057 0.1403 8 1 1.9488 4.5488 -1.1839 9 1 1.9237 4.9483 1.2078 10 1 3.8190 3.8344 0.1844 11 6 2.1975 -1.2687 0.0006 12 1 3.2692 -1.0706 0.0020 13 6 1.8280 -2.0750 1.2483 14 6 2.6147 -3.3876 1.2645 15 6 2.2466 -4.2143 0.0284 16 7 2.4655 -3.3944 -1.1711 17 6 3.2363 -3.8461 -2.1802 18 8 3.8315 -4.9005 -2.0659 19 6 3.3578 -3.0622 -3.4224 20 6 2.3187 -2.2404 -4.0599 21 6 2.8838 -1.7197 -5.1599 22 8 4.1538 -2.1451 -5.2454 23 6 4.4603 -2.9417 -4.2167 24 6 5.7952 -3.5987 -3.9778 25 6 5.8197 -4.9463 -4.6518 26 7 6.9206 -5.7199 -4.5719 27 8 4.8489 -5.3348 -5.2662 28 6 1.8278 -2.0731 -1.2497 29 1 -0.3634 0.1068 1.0220 30 1 -0.3633 0.8318 -0.6036 31 1 -0.3633 -0.9385 -0.4186 32 1 -0.1066 3.1086 1.2686 33 1 0.7600 -2.2918 1.2349 34 1 2.0697 -1.4958 2.1394 35 1 2.3664 -3.9495 2.1650 36 1 3.6830 -3.1718 1.2529 37 1 1.1983 -4.5078 0.0840 38 1 2.8734 -5.1048 -0.0183 39 1 1.3073 -2.0872 -3.7136 40 1 2.3948 -1.0624 -5.8638 41 1 6.5871 -2.9725 -4.3887 42 1 5.9512 -3.7254 -2.9065 43 1 7.6968 -5.4093 -4.0802 44 1 6.9361 -6.5874 -5.0055 45 1 2.1802 -1.5496 -2.1384 46 1 0.7455 -2.1922 -1.3008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027544484.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:13 Heat of formation + Delta-G solvation = -50.691382 kcal Electronic energy + Delta-G solvation = -30228.513494 eV Core-core repulsion = 26119.861617 eV Total energy + Delta-G solvation = -4108.651877 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.61130 -41.03741 -40.37206 -38.87091 -36.61822 -34.73993 -34.53004 -33.69702 -33.13574 -32.63674 -30.31714 -28.66513 -28.02536 -26.59940 -25.28657 -24.15009 -23.02344 -22.38570 -21.62237 -20.87492 -19.74209 -18.89871 -18.52791 -18.33935 -17.92112 -17.33922 -16.98761 -16.82739 -16.68459 -16.17142 -15.99739 -15.68918 -15.28440 -15.26307 -14.99650 -14.70333 -14.47876 -14.34244 -14.06819 -13.97170 -13.73741 -13.64065 -13.38216 -12.83828 -12.78741 -12.73341 -12.47203 -12.25045 -12.10847 -11.94022 -11.80371 -11.61299 -11.45380 -11.23027 -11.12189 -10.67025 -10.66000 -10.53221 -9.78183 -9.54047 -8.74925 -7.78054 -5.25075 0.33911 1.13276 1.49116 1.49930 1.58109 1.60675 1.75606 1.90023 2.17312 2.53671 2.68603 3.35074 3.42045 3.43468 3.77126 3.92371 3.96129 4.02812 4.04128 4.14775 4.16769 4.22978 4.32927 4.37585 4.56983 4.61818 4.64944 4.74018 4.82392 4.90180 4.93981 4.99656 5.02846 5.10244 5.32230 5.33476 5.46242 5.49011 5.54070 5.67725 5.81139 5.89015 6.01505 6.30159 6.39163 6.42747 7.08361 7.19146 7.33260 7.90327 8.32133 9.24129 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013379 B = 0.003677 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.265835 B = 7612.136125 C = 8724.561727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.182 3.818 2 N -0.606 5.606 3 C -0.257 4.257 4 H 0.070 0.930 5 C -0.050 4.050 6 N -0.939 5.939 7 Si 0.965 3.035 8 H -0.285 1.285 9 H -0.298 1.298 10 H -0.271 1.271 11 C 0.168 3.832 12 H 0.050 0.950 13 C -0.124 4.124 14 C -0.117 4.117 15 C 0.112 3.888 16 N -0.595 5.595 17 C 0.588 3.412 18 O -0.570 6.570 19 C -0.245 4.245 20 C -0.205 4.205 21 C -0.021 4.021 22 O -0.175 6.175 23 C 0.067 3.933 24 C -0.064 4.064 25 C 0.526 3.474 26 N -0.831 5.831 27 O -0.586 6.586 28 C 0.098 3.902 29 H 0.002 0.998 30 H 0.020 0.980 31 H 0.028 0.972 32 H 0.246 0.754 33 H 0.057 0.943 34 H 0.044 0.956 35 H 0.096 0.904 36 H 0.060 0.940 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.165 0.835 40 H 0.248 0.752 41 H 0.154 0.846 42 H 0.134 0.866 43 H 0.420 0.580 44 H 0.409 0.591 45 H 0.094 0.906 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.011 -12.765 -8.884 19.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.329 5.329 3 C -0.387 4.387 4 H 0.087 0.913 5 C -0.245 4.245 6 N -0.586 5.586 7 Si 0.794 3.206 8 H -0.212 1.212 9 H -0.225 1.225 10 H -0.196 1.196 11 C 0.060 3.940 12 H 0.068 0.932 13 C -0.164 4.164 14 C -0.155 4.155 15 C -0.010 4.010 16 N -0.327 5.327 17 C 0.378 3.622 18 O -0.452 6.452 19 C -0.249 4.249 20 C -0.224 4.224 21 C -0.086 4.086 22 O -0.071 6.071 23 C 0.014 3.986 24 C -0.103 4.103 25 C 0.311 3.689 26 N -0.396 5.396 27 O -0.466 6.466 28 C -0.026 4.026 29 H 0.020 0.980 30 H 0.039 0.961 31 H 0.047 0.953 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.114 0.886 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.109 0.891 39 H 0.182 0.818 40 H 0.264 0.736 41 H 0.172 0.828 42 H 0.152 0.848 43 H 0.252 0.748 44 H 0.241 0.759 45 H 0.112 0.888 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 10.719 -13.177 -9.310 19.370 hybrid contribution -0.060 1.042 0.437 1.132 sum 10.660 -12.134 -8.873 18.429 Atomic orbital electron populations 1.20512 0.82448 0.95650 0.97668 1.44071 1.02088 1.00750 1.85980 1.19537 0.96577 0.86086 1.36545 0.91262 1.25655 0.98085 1.01331 0.99442 1.70249 1.16809 1.26839 1.44702 0.85291 0.78322 0.80129 0.76853 1.21223 1.22455 1.19559 1.20680 0.95115 0.85277 0.92929 0.93175 1.21975 1.00002 0.95873 0.98564 1.21818 1.00115 0.95592 0.98024 1.21731 1.02098 0.94052 0.83083 1.47991 1.48513 1.18344 1.17841 1.17479 0.78188 0.84117 0.82427 1.90706 1.47890 1.24310 1.82271 1.21217 0.96453 1.07310 0.99941 1.23092 1.01001 1.00849 0.97442 1.24606 0.81122 1.02166 1.00697 1.83710 1.30482 1.51316 1.41576 1.22016 0.96720 0.93742 0.86157 1.20311 0.91997 0.93310 1.04729 1.20369 0.82689 0.86755 0.79096 1.43525 1.16653 1.22065 1.57381 1.90758 1.36308 1.74878 1.44657 1.22559 0.97480 0.81686 1.00880 0.97975 0.96139 0.95320 0.94416 0.92446 0.93692 0.88552 0.92155 0.90370 0.89147 0.81759 0.73607 0.82791 0.84787 0.74774 0.75882 0.88773 0.91414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.57 8.01 127.77 1.02 9.59 16 2 N -0.61 -28.73 2.83 -702.29 -1.98 -30.71 16 3 C -0.26 -13.60 9.65 84.03 0.81 -12.79 16 4 H 0.07 3.58 7.78 -2.91 -0.02 3.56 16 5 C -0.05 -2.74 5.17 84.86 0.44 -2.30 16 6 N -0.94 -53.96 10.37 21.65 0.22 -53.74 16 7 Si 0.97 43.96 29.57 68.60 2.03 45.99 16 8 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 9 H -0.30 -13.78 7.11 99.48 0.71 -13.08 16 10 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 11 C 0.17 6.48 2.74 45.08 0.12 6.60 16 12 H 0.05 2.06 7.85 -2.39 -0.02 2.04 16 13 C -0.12 -4.24 5.15 30.63 0.16 -4.09 16 14 C -0.12 -3.10 6.08 30.67 0.19 -2.91 16 15 C 0.11 3.03 6.44 86.36 0.56 3.59 16 16 N -0.60 -18.63 2.97 -822.82 -2.45 -21.08 16 17 C 0.59 19.85 7.40 86.65 0.64 20.49 16 18 O -0.57 -21.02 15.51 -4.08 -0.06 -21.09 16 19 C -0.24 -7.76 5.52 -18.99 -0.10 -7.87 16 20 C -0.20 -5.74 8.66 23.65 0.20 -5.54 16 21 C -0.02 -0.48 12.03 66.89 0.80 0.32 16 22 O -0.18 -4.66 10.52 4.42 0.05 -4.62 16 23 C 0.07 1.89 5.86 25.26 0.15 2.04 16 24 C -0.06 -1.31 5.64 29.10 0.16 -1.15 16 25 C 0.53 12.42 8.09 87.65 0.71 13.13 16 26 N -0.83 -10.89 8.87 -173.53 -1.54 -12.43 16 27 O -0.59 -20.39 16.87 -3.05 -0.05 -20.44 16 28 C 0.10 3.26 4.79 86.36 0.41 3.68 16 29 H 0.00 0.10 7.39 -2.39 -0.02 0.08 16 30 H 0.02 1.04 7.10 -2.38 -0.02 1.02 16 31 H 0.03 1.13 6.37 -2.39 -0.02 1.12 16 32 H 0.25 13.88 8.31 -92.71 -0.77 13.11 16 33 H 0.06 1.95 7.71 -2.39 -0.02 1.93 16 34 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.10 2.08 8.14 -2.38 -0.02 2.06 16 36 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.09 2.46 6.99 -2.39 -0.02 2.44 16 39 H 0.16 4.31 7.07 -2.91 -0.02 4.29 16 40 H 0.25 3.51 8.06 -2.91 -0.02 3.49 16 41 H 0.15 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.13 2.58 7.52 -2.39 -0.02 2.56 16 43 H 0.42 2.24 8.83 -92.71 -0.82 1.42 16 44 H 0.41 4.74 8.93 -92.71 -0.83 3.91 16 45 H 0.09 3.21 4.38 -2.39 -0.01 3.20 16 46 H 0.07 2.22 6.50 -2.39 -0.02 2.20 16 Total: -1.00 -77.96 371.60 1.88 -76.08 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: -0.61 Total: 19.23 kcal Atomic # 6 Polarization: 16.53 SS G_CDS: 6.28 Total: 22.80 kcal Atomic # 7 Polarization: -112.21 SS G_CDS: -5.75 Total: -117.96 kcal Atomic # 8 Polarization: -46.07 SS G_CDS: -0.07 Total: -46.14 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -77.96 1.88 -76.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027544484.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.386 kcal (2) G-P(sol) polarization free energy of solvation -77.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds