Wall clock time and date at job start Tue Mar 31 2020 19:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35683 * 117.00174 * 2 1 4 4 C 1.38736 * 119.58236 * 180.02562 * 3 2 1 5 5 C 1.39717 * 119.07740 * 180.02562 * 4 3 2 6 6 C 1.48182 * 120.86394 * 179.97438 * 5 4 3 7 7 O 1.21514 * 119.99755 * 0.02562 * 6 5 4 8 8 N 1.34772 * 119.99976 * 179.97438 * 6 5 4 9 9 C 1.46504 * 119.99550 * 179.72501 * 8 6 5 10 10 C 1.53008 * 109.46831 * 185.11821 * 9 8 6 11 11 H 1.09006 * 109.87169 * 305.51611 * 10 9 8 12 12 C 1.54318 * 109.88361 * 66.53207 * 10 9 8 13 13 C 1.55401 * 102.82831 * 141.51368 * 12 10 9 14 14 C 1.54914 * 101.66826 * 324.66896 * 13 12 10 15 15 N 1.47022 * 109.88171 * 184.50153 * 10 9 8 16 16 C 1.36938 * 125.64388 * 61.60747 * 15 10 9 17 17 H 1.07998 * 120.00460 * 14.74890 * 16 15 10 18 18 C 1.38823 * 119.99707 * 194.74973 * 16 15 10 19 19 N 1.31620 * 119.99949 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99864 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47369 * 60.00051 * 20 18 16 22 22 H 1.48502 * 109.46930 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.46966 * 299.99558 * 20 18 16 24 24 C 1.39728 * 118.27970 * 0.25070 * 5 4 3 25 25 C 1.38743 * 119.07124 * 359.50269 * 24 5 4 26 26 O 1.35681 * 119.58326 * 180.27414 * 25 24 5 27 27 C 1.42899 * 117.00389 * 180.23153 * 26 25 24 28 28 N 1.32259 * 119.58100 * 0.02562 * 3 2 1 29 29 H 1.09002 * 109.46814 * 300.00304 * 1 2 3 30 30 H 1.09000 * 109.46939 * 59.99676 * 1 2 3 31 31 H 1.09002 * 109.47412 * 180.02562 * 1 2 3 32 32 H 1.08002 * 120.45978 * 0.04591 * 4 3 2 33 33 H 0.97000 * 120.00524 * 0.02562 * 8 6 5 34 34 H 1.08997 * 109.47110 * 305.11541 * 9 8 6 35 35 H 1.08996 * 109.46978 * 65.12228 * 9 8 6 36 36 H 1.08992 * 110.72556 * 259.97540 * 12 10 9 37 37 H 1.09007 * 110.71657 * 23.25007 * 12 10 9 38 38 H 1.08998 * 111.04549 * 206.52723 * 13 12 10 39 39 H 1.09004 * 110.92179 * 82.75144 * 13 12 10 40 40 H 1.08999 * 110.35963 * 278.08276 * 14 13 12 41 41 H 1.08999 * 110.36767 * 155.76218 * 14 13 12 42 42 H 0.96993 * 119.99895 * 179.97438 * 19 18 16 43 43 H 1.07994 * 120.46756 * 179.75040 * 24 5 4 44 44 H 1.09002 * 109.47145 * 300.00568 * 27 26 25 45 45 H 1.09004 * 109.46596 * 60.00100 * 27 26 25 46 46 H 1.08996 * 109.47171 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4310 1.2714 -0.0005 5 6 4.0543 2.5218 0.0000 6 6 5.5319 2.6346 0.0000 7 8 6.2178 1.6316 -0.0009 8 7 6.1149 3.8497 0.0001 9 6 7.5757 3.9612 0.0062 10 6 7.9743 5.4329 0.1335 11 1 7.4938 6.0163 -0.6520 12 6 7.5563 5.9720 1.5178 13 6 8.7436 6.8989 1.9000 14 6 9.9463 6.1338 1.2932 15 7 9.4350 5.5658 0.0326 16 6 10.1948 5.2188 -1.0525 17 1 9.7224 5.0364 -2.0064 18 6 11.5723 5.1013 -0.9263 19 7 12.1480 5.3241 0.2362 20 14 12.6088 4.6286 -2.4067 21 1 12.4318 5.6409 -3.4785 22 1 14.0392 4.5717 -2.0115 23 1 12.1797 3.2978 -2.9067 24 6 3.2484 3.6633 0.0065 25 6 1.8690 3.5146 0.0015 26 8 1.0766 4.6160 0.0021 27 6 -0.3358 4.3991 0.0020 28 7 1.3166 2.3129 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 4.0199 0.3660 -0.0017 33 1 5.5674 4.6505 0.0004 34 1 7.9792 3.4012 0.8497 35 1 7.9748 3.5558 -0.9236 36 1 6.6284 6.5393 1.4467 37 1 7.4574 5.1572 2.2351 38 1 8.8408 6.9844 2.9823 39 1 8.6338 7.8814 1.4409 40 1 10.2675 5.3380 1.9651 41 1 10.7703 6.8189 1.0940 42 1 13.1104 5.2416 0.3244 43 1 3.6930 4.6474 0.0112 44 1 -0.6170 3.8364 -0.8882 45 1 -0.6169 3.8356 0.8918 46 1 -0.8509 5.3597 0.0029 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027998532.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:56 Heat of formation + Delta-G solvation = -41.271219 kcal Electronic energy + Delta-G solvation = -28651.647438 eV Core-core repulsion = 24543.404049 eV Total energy + Delta-G solvation = -4108.243388 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.32931 -39.55396 -39.22947 -37.72169 -37.08292 -34.44091 -32.83426 -32.44101 -30.83509 -29.67985 -28.80790 -28.16557 -26.89713 -25.28991 -24.45587 -23.67738 -23.08748 -20.80367 -20.21046 -19.77540 -18.89879 -18.24118 -17.02791 -16.73028 -16.58069 -16.56325 -15.87246 -15.85677 -15.57836 -15.19932 -15.03054 -14.76867 -14.28733 -14.00404 -13.86739 -13.53796 -13.41045 -13.03467 -12.64056 -12.43655 -12.11173 -11.96590 -11.95636 -11.89071 -11.76950 -11.35103 -10.98553 -10.95771 -10.77988 -10.48300 -10.27955 -10.14315 -10.10075 -10.03249 -9.87102 -9.80186 -9.69511 -8.76361 -8.58863 -8.51686 -6.85603 -5.77906 -3.14811 0.47157 0.88307 2.51939 2.73598 2.83887 3.26109 3.41096 3.45572 3.46482 3.60092 3.89583 4.47026 4.56420 4.69442 4.79559 4.87229 4.90714 4.91474 4.94492 5.00748 5.20826 5.24302 5.31609 5.38071 5.45853 5.52759 5.60624 5.76611 5.79708 5.90583 6.03117 6.11169 6.22901 6.43945 6.47000 6.50902 6.55710 6.66194 6.76808 6.99673 7.02162 7.34174 7.50266 7.59246 7.63846 7.78033 8.23442 8.28934 9.16132 9.76632 10.43795 11.33999 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017162 B = 0.002480 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.089636 B =11285.910450 C =12203.202212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.300 6.300 3 C 0.357 3.643 4 C -0.171 4.171 5 C -0.012 4.012 6 C 0.552 3.448 7 O -0.523 6.523 8 N -0.709 5.709 9 C 0.107 3.893 10 C 0.151 3.849 11 H 0.039 0.961 12 C -0.127 4.127 13 C -0.148 4.148 14 C 0.172 3.828 15 N -0.588 5.588 16 C -0.236 4.236 17 H 0.076 0.924 18 C 0.000 4.000 19 N -0.915 5.915 20 Si 0.911 3.089 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.283 1.283 24 C -0.198 4.198 25 C 0.358 3.642 26 O -0.301 6.301 27 C 0.040 3.960 28 N -0.585 5.585 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.098 0.902 32 H 0.158 0.842 33 H 0.397 0.603 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.026 0.974 41 H 0.072 0.928 42 H 0.255 0.745 43 H 0.150 0.850 44 H 0.058 0.942 45 H 0.058 0.942 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.989 -2.548 1.975 26.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.207 6.207 3 C 0.180 3.820 4 C -0.193 4.193 5 C -0.022 4.022 6 C 0.337 3.663 7 O -0.400 6.400 8 N -0.360 5.360 9 C -0.018 4.018 10 C 0.043 3.957 11 H 0.056 0.944 12 C -0.165 4.165 13 C -0.187 4.187 14 C 0.047 3.953 15 N -0.312 5.312 16 C -0.365 4.365 17 H 0.093 0.907 18 C -0.198 4.198 19 N -0.561 5.561 20 Si 0.741 3.259 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.209 1.209 24 C -0.219 4.219 25 C 0.180 3.820 26 O -0.208 6.208 27 C -0.055 4.055 28 N -0.325 5.325 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.116 0.884 32 H 0.176 0.824 33 H 0.232 0.768 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.045 0.955 41 H 0.091 0.909 42 H 0.065 0.935 43 H 0.168 0.832 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -25.903 -3.326 1.929 26.187 hybrid contribution 0.551 0.053 -0.743 0.926 sum -25.353 -3.273 1.186 25.591 Atomic orbital electron populations 1.22885 0.77073 1.03202 1.02353 1.86303 1.22993 1.23888 1.87503 1.19163 0.88670 0.83404 0.90813 1.20969 0.91404 0.99388 1.07495 1.20042 0.94175 0.92271 0.95752 1.17954 0.86059 0.84325 0.78002 1.90815 1.64034 1.36138 1.49005 1.46081 1.09522 1.07137 1.73301 1.22385 0.75889 1.00551 1.02955 1.21143 0.87972 0.91507 0.95113 0.94383 1.22665 0.97790 0.99102 0.96987 1.23049 0.97618 0.98545 0.99491 1.21461 0.92667 0.95058 0.86085 1.44474 0.99468 1.72684 1.14549 1.18938 0.88605 1.41104 0.87806 0.90660 1.24925 0.96985 1.00895 0.96953 1.69924 1.09728 1.53973 1.22442 0.86224 0.79362 0.78645 0.81690 1.21065 1.21558 1.20899 1.21040 0.90479 1.00179 1.10236 1.19133 0.88321 0.83779 0.90784 1.86291 1.19489 1.27427 1.87571 1.22881 0.77303 1.02959 1.02356 1.66620 1.41930 0.98584 1.25335 0.92290 0.92284 0.88370 0.82429 0.76772 0.91215 0.90985 0.92285 0.91770 0.92322 0.92293 0.95547 0.90943 0.93508 0.83233 0.92300 0.92309 0.88358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.38 101.05 1.05 1.33 16 2 O -0.30 -3.19 10.47 -18.75 -0.20 -3.39 16 3 C 0.36 4.22 7.48 -17.18 -0.13 4.09 16 4 C -0.17 -2.18 9.60 -38.85 -0.37 -2.56 16 5 C -0.01 -0.16 5.90 -104.70 -0.62 -0.77 16 6 C 0.55 8.71 7.80 -12.18 -0.09 8.62 16 7 O -0.52 -10.31 16.44 5.35 0.09 -10.22 16 8 N -0.71 -10.46 5.32 -61.14 -0.32 -10.78 16 9 C 0.11 2.01 5.10 -4.04 -0.02 1.99 16 10 C 0.15 2.90 3.19 -66.95 -0.21 2.69 16 11 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 12 C -0.13 -2.06 6.22 -24.77 -0.15 -2.22 16 13 C -0.15 -2.66 7.09 -24.45 -0.17 -2.83 16 14 C 0.17 4.04 5.41 -2.53 -0.01 4.02 16 15 N -0.59 -14.32 3.13 -162.57 -0.51 -14.83 16 16 C -0.24 -6.39 9.72 -15.05 -0.15 -6.53 16 17 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 18 C 0.00 0.00 5.47 -17.43 -0.10 -0.10 16 19 N -0.92 -26.42 10.58 55.49 0.59 -25.83 16 20 Si 0.91 21.97 29.55 -169.99 -5.02 16.94 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 C -0.20 -2.18 9.54 -38.84 -0.37 -2.55 16 25 C 0.36 3.96 7.48 -17.18 -0.13 3.83 16 26 O -0.30 -2.95 10.47 -18.75 -0.20 -3.15 16 27 C 0.04 0.26 10.38 101.05 1.05 1.31 16 28 N -0.58 -6.52 8.02 -13.45 -0.11 -6.63 16 29 H 0.06 0.39 8.10 -51.93 -0.42 -0.03 16 30 H 0.06 0.39 8.10 -51.93 -0.42 -0.03 16 31 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.16 2.04 7.74 -52.49 -0.41 1.64 16 33 H 0.40 4.63 6.52 -40.82 -0.27 4.36 16 34 H 0.07 1.46 8.03 -51.93 -0.42 1.04 16 35 H 0.07 1.54 7.86 -51.93 -0.41 1.13 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 1.03 7.78 -51.93 -0.40 0.63 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.03 0.68 8.06 -51.93 -0.42 0.26 16 41 H 0.07 1.90 6.94 -51.93 -0.36 1.54 16 42 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.15 1.34 6.53 -52.49 -0.34 0.99 16 44 H 0.06 0.38 8.10 -51.93 -0.42 -0.04 16 45 H 0.06 0.38 8.10 -51.93 -0.42 -0.05 16 46 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 382.90 15.07 5.77 5.77 Total: -1.00 -32.44 382.90 -7.13 -39.57 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -6.79 Total: 2.23 kcal Atomic # 6 Polarization: 10.75 SS G_CDS: -0.43 Total: 10.31 kcal Atomic # 7 Polarization: -57.72 SS G_CDS: -0.35 Total: -58.07 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: -0.30 Total: -16.76 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.44 -7.13 -39.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027998532.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.703 kcal (2) G-P(sol) polarization free energy of solvation -32.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds