Wall clock time and date at job start Tue Mar 31 2020 19:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35683 * 117.00174 * 2 1 4 4 C 1.38736 * 119.58236 * 180.02562 * 3 2 1 5 5 C 1.39717 * 119.07740 * 180.02562 * 4 3 2 6 6 C 1.48182 * 120.86394 * 179.97438 * 5 4 3 7 7 O 1.21514 * 119.99755 * 0.02562 * 6 5 4 8 8 N 1.34772 * 119.99976 * 179.97438 * 6 5 4 9 9 C 1.46504 * 119.99550 * 179.72501 * 8 6 5 10 10 C 1.53008 * 109.46831 * 185.11821 * 9 8 6 11 11 H 1.09006 * 109.87169 * 305.51611 * 10 9 8 12 12 C 1.54318 * 109.88361 * 66.53207 * 10 9 8 13 13 C 1.55401 * 102.82831 * 141.51368 * 12 10 9 14 14 C 1.54914 * 101.66826 * 324.66896 * 13 12 10 15 15 N 1.47022 * 109.88171 * 184.50153 * 10 9 8 16 16 C 1.36938 * 125.64388 * 61.60747 * 15 10 9 17 17 H 1.07998 * 120.00460 * 14.74890 * 16 15 10 18 18 C 1.38823 * 119.99707 * 194.74973 * 16 15 10 19 19 N 1.31620 * 119.99949 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99864 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47369 * 60.00051 * 20 18 16 22 22 H 1.48502 * 109.46930 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.46966 * 299.99558 * 20 18 16 24 24 C 1.39728 * 118.27970 * 0.25070 * 5 4 3 25 25 C 1.38743 * 119.07124 * 359.50269 * 24 5 4 26 26 O 1.35681 * 119.58326 * 180.27414 * 25 24 5 27 27 C 1.42899 * 117.00389 * 180.23153 * 26 25 24 28 28 N 1.32259 * 119.58100 * 0.02562 * 3 2 1 29 29 H 1.09002 * 109.46814 * 300.00304 * 1 2 3 30 30 H 1.09000 * 109.46939 * 59.99676 * 1 2 3 31 31 H 1.09002 * 109.47412 * 180.02562 * 1 2 3 32 32 H 1.08002 * 120.45978 * 0.04591 * 4 3 2 33 33 H 0.97000 * 120.00524 * 0.02562 * 8 6 5 34 34 H 1.08997 * 109.47110 * 305.11541 * 9 8 6 35 35 H 1.08996 * 109.46978 * 65.12228 * 9 8 6 36 36 H 1.08992 * 110.72556 * 259.97540 * 12 10 9 37 37 H 1.09007 * 110.71657 * 23.25007 * 12 10 9 38 38 H 1.08998 * 111.04549 * 206.52723 * 13 12 10 39 39 H 1.09004 * 110.92179 * 82.75144 * 13 12 10 40 40 H 1.08999 * 110.35963 * 278.08276 * 14 13 12 41 41 H 1.08999 * 110.36767 * 155.76218 * 14 13 12 42 42 H 0.96993 * 119.99895 * 179.97438 * 19 18 16 43 43 H 1.07994 * 120.46756 * 179.75040 * 24 5 4 44 44 H 1.09002 * 109.47145 * 300.00568 * 27 26 25 45 45 H 1.09004 * 109.46596 * 60.00100 * 27 26 25 46 46 H 1.08996 * 109.47171 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4310 1.2714 -0.0005 5 6 4.0543 2.5218 0.0000 6 6 5.5319 2.6346 0.0000 7 8 6.2178 1.6316 -0.0009 8 7 6.1149 3.8497 0.0001 9 6 7.5757 3.9612 0.0062 10 6 7.9743 5.4329 0.1335 11 1 7.4938 6.0163 -0.6520 12 6 7.5563 5.9720 1.5178 13 6 8.7436 6.8989 1.9000 14 6 9.9463 6.1338 1.2932 15 7 9.4350 5.5658 0.0326 16 6 10.1948 5.2188 -1.0525 17 1 9.7224 5.0364 -2.0064 18 6 11.5723 5.1013 -0.9263 19 7 12.1480 5.3241 0.2362 20 14 12.6088 4.6286 -2.4067 21 1 12.4318 5.6409 -3.4785 22 1 14.0392 4.5717 -2.0115 23 1 12.1797 3.2978 -2.9067 24 6 3.2484 3.6633 0.0065 25 6 1.8690 3.5146 0.0015 26 8 1.0766 4.6160 0.0021 27 6 -0.3358 4.3991 0.0020 28 7 1.3166 2.3129 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 4.0199 0.3660 -0.0017 33 1 5.5674 4.6505 0.0004 34 1 7.9792 3.4012 0.8497 35 1 7.9748 3.5558 -0.9236 36 1 6.6284 6.5393 1.4467 37 1 7.4574 5.1572 2.2351 38 1 8.8408 6.9844 2.9823 39 1 8.6338 7.8814 1.4409 40 1 10.2675 5.3380 1.9651 41 1 10.7703 6.8189 1.0940 42 1 13.1104 5.2416 0.3244 43 1 3.6930 4.6474 0.0112 44 1 -0.6170 3.8364 -0.8882 45 1 -0.6169 3.8356 0.8918 46 1 -0.8509 5.3597 0.0029 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027998532.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:55 Heat of formation + Delta-G solvation = -66.370261 kcal Electronic energy + Delta-G solvation = -28652.735814 eV Core-core repulsion = 24543.404049 eV Total energy + Delta-G solvation = -4109.331765 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.22423 -40.82025 -39.97423 -39.28631 -37.98306 -35.92411 -34.43857 -33.72963 -31.69997 -31.36632 -30.37358 -28.86785 -27.52986 -26.82337 -26.11734 -24.67693 -24.23874 -22.10428 -21.72172 -21.23541 -20.09605 -19.03412 -18.69496 -17.81807 -17.64120 -17.49435 -16.97301 -16.84948 -16.54318 -16.45344 -16.39851 -16.00217 -15.73981 -15.59677 -14.78464 -14.74058 -14.71380 -14.15162 -13.94365 -13.64920 -13.46973 -13.38530 -12.97997 -12.96653 -12.85524 -12.64259 -12.57716 -12.57170 -12.05213 -11.88152 -11.75636 -11.71157 -11.52508 -11.46651 -11.37681 -11.06684 -11.02211 -10.66075 -10.16619 -9.35926 -8.84610 -7.87425 -5.24861 -0.51712 0.00499 1.45309 1.48615 1.54018 1.63647 1.69526 1.99899 2.12685 2.50325 2.61126 3.06692 3.32315 3.53389 3.73582 3.81252 3.89862 3.97000 4.00221 4.14319 4.29294 4.38310 4.41141 4.42969 4.45931 4.46598 4.55801 4.61567 4.72243 4.74738 4.78135 4.91435 4.95664 4.99938 5.02673 5.15936 5.20116 5.31009 5.49046 5.56870 5.68584 5.73713 5.80260 6.22227 6.24153 6.41011 6.49214 7.05207 7.10505 7.77572 8.43326 9.23351 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017162 B = 0.002480 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.089636 B =11285.910450 C =12203.202212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.312 6.312 3 C 0.357 3.643 4 C -0.185 4.185 5 C -0.018 4.018 6 C 0.556 3.444 7 O -0.570 6.570 8 N -0.691 5.691 9 C 0.126 3.874 10 C 0.147 3.853 11 H 0.056 0.944 12 C -0.115 4.115 13 C -0.133 4.133 14 C 0.173 3.827 15 N -0.610 5.610 16 C -0.240 4.240 17 H 0.078 0.922 18 C -0.059 4.059 19 N -0.945 5.945 20 Si 0.971 3.029 21 H -0.274 1.274 22 H -0.294 1.294 23 H -0.282 1.282 24 C -0.188 4.188 25 C 0.356 3.644 26 O -0.304 6.304 27 C 0.033 3.967 28 N -0.578 5.578 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.123 0.877 32 H 0.146 0.854 33 H 0.417 0.583 34 H 0.043 0.957 35 H 0.040 0.960 36 H 0.107 0.893 37 H 0.065 0.935 38 H 0.081 0.919 39 H 0.071 0.929 40 H -0.009 1.009 41 H 0.036 0.964 42 H 0.247 0.753 43 H 0.174 0.826 44 H 0.059 0.941 45 H 0.060 0.940 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.549 -1.183 1.823 29.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.219 6.219 3 C 0.179 3.821 4 C -0.207 4.207 5 C -0.028 4.028 6 C 0.342 3.658 7 O -0.450 6.450 8 N -0.344 5.344 9 C 0.000 4.000 10 C 0.040 3.960 11 H 0.074 0.926 12 C -0.152 4.152 13 C -0.172 4.172 14 C 0.048 3.952 15 N -0.334 5.334 16 C -0.369 4.369 17 H 0.096 0.904 18 C -0.253 4.253 19 N -0.593 5.593 20 Si 0.799 3.201 21 H -0.199 1.199 22 H -0.221 1.221 23 H -0.208 1.208 24 C -0.209 4.209 25 C 0.178 3.822 26 O -0.211 6.211 27 C -0.061 4.061 28 N -0.319 5.319 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.141 0.859 32 H 0.164 0.836 33 H 0.256 0.744 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.126 0.874 37 H 0.084 0.916 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.009 0.991 41 H 0.054 0.946 42 H 0.057 0.943 43 H 0.192 0.808 44 H 0.078 0.922 45 H 0.079 0.921 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -29.548 -1.929 1.769 29.664 hybrid contribution 1.470 -0.382 -0.702 1.673 sum -28.078 -2.311 1.067 28.193 Atomic orbital electron populations 1.23166 0.75084 1.05073 1.02683 1.86299 1.25000 1.23377 1.87219 1.19123 0.88371 0.84030 0.90589 1.20942 0.92136 0.99107 1.08554 1.19653 0.92195 0.93261 0.97701 1.18331 0.87225 0.83643 0.76615 1.90796 1.65414 1.37702 1.51065 1.45729 1.07871 1.07940 1.72852 1.21842 0.78096 0.99850 1.00172 1.21366 0.85171 0.91602 0.97877 0.92613 1.22675 0.98945 0.99083 0.94534 1.22911 0.95197 0.98466 1.00599 1.21274 0.94343 0.93867 0.85732 1.44732 1.01724 1.72921 1.14026 1.19273 0.89164 1.39567 0.88939 0.90410 1.25684 0.98318 1.01936 0.99394 1.70129 1.09267 1.55724 1.24189 0.85274 0.77421 0.78351 0.79049 1.19924 1.22064 1.20839 1.21186 0.90502 1.00352 1.08909 1.19283 0.88656 0.84099 0.90160 1.86297 1.20935 1.26684 1.87135 1.23158 0.75669 1.04749 1.02512 1.66684 1.41682 0.98521 1.24994 0.91882 0.91932 0.85854 0.83576 0.74426 0.93882 0.94159 0.87420 0.91645 0.90015 0.91036 0.99051 0.94594 0.94328 0.80818 0.92178 0.92102 0.85652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.38 113.37 1.18 1.58 16 2 O -0.31 -6.29 10.47 -90.01 -0.94 -7.23 16 3 C 0.36 8.02 7.48 84.75 0.63 8.66 16 4 C -0.19 -4.70 9.60 22.75 0.22 -4.49 16 5 C -0.02 -0.44 5.90 -19.92 -0.12 -0.56 16 6 C 0.56 17.37 7.80 86.89 0.68 18.05 16 7 O -0.57 -23.21 16.44 -3.76 -0.06 -23.27 16 8 N -0.69 -19.41 5.32 -465.64 -2.48 -21.88 16 9 C 0.13 4.76 5.10 86.38 0.44 5.20 16 10 C 0.15 5.43 3.19 45.34 0.14 5.57 16 11 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 12 C -0.11 -3.33 6.22 31.87 0.20 -3.13 16 13 C -0.13 -4.48 7.09 32.07 0.23 -4.25 16 14 C 0.17 8.30 5.41 86.86 0.47 8.77 16 15 N -0.61 -30.08 3.13 -668.26 -2.09 -32.17 16 16 C -0.24 -13.25 9.72 84.04 0.82 -12.44 16 17 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 18 C -0.06 -3.39 5.47 84.86 0.46 -2.93 16 19 N -0.95 -56.95 10.58 21.66 0.23 -56.72 16 20 Si 0.97 46.32 29.55 68.60 2.03 48.35 16 21 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 22 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 23 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 24 C -0.19 -3.64 9.54 22.75 0.22 -3.42 16 25 C 0.36 6.92 7.48 84.75 0.63 7.56 16 26 O -0.30 -4.93 10.47 -89.99 -0.94 -5.87 16 27 C 0.03 0.33 10.38 113.37 1.18 1.51 16 28 N -0.58 -11.68 8.02 -422.18 -3.39 -15.06 16 29 H 0.06 0.70 8.10 -2.39 -0.02 0.68 16 30 H 0.06 0.70 8.10 -2.39 -0.02 0.68 16 31 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.15 3.97 7.74 -2.91 -0.02 3.94 16 33 H 0.42 8.32 6.52 -92.71 -0.60 7.71 16 34 H 0.04 1.85 8.03 -2.39 -0.02 1.83 16 35 H 0.04 1.77 7.86 -2.39 -0.02 1.75 16 36 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.06 1.92 7.78 -2.38 -0.02 1.90 16 38 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 40 H -0.01 -0.46 8.06 -2.39 -0.02 -0.48 16 41 H 0.04 1.95 6.94 -2.39 -0.02 1.94 16 42 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 43 H 0.17 2.38 6.53 -2.91 -0.02 2.36 16 44 H 0.06 0.60 8.10 -2.39 -0.02 0.58 16 45 H 0.06 0.60 8.10 -2.38 -0.02 0.58 16 46 H 0.13 0.57 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -74.66 382.90 0.13 -74.53 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: 0.39 Total: 13.65 kcal Atomic # 6 Polarization: 18.30 SS G_CDS: 7.38 Total: 25.68 kcal Atomic # 7 Polarization: -118.11 SS G_CDS: -7.72 Total: -125.83 kcal Atomic # 8 Polarization: -34.43 SS G_CDS: -1.95 Total: -36.38 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -74.66 0.13 -74.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027998532.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.159 kcal (2) G-P(sol) polarization free energy of solvation -74.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds