Wall clock time and date at job start Tue Mar 31 2020 19:04:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42899 * 1
3 3 C 1.35684 * 117.00057 * 2 1
4 4 C 1.38738 * 119.58583 * 179.97438 * 3 2 1
5 5 C 1.39718 * 119.07936 * 180.02562 * 4 3 2
6 6 C 1.48176 * 120.86325 * 180.02562 * 5 4 3
7 7 O 1.21514 * 119.99964 * 359.97438 * 6 5 4
8 8 N 1.34776 * 120.00265 * 179.97438 * 6 5 4
9 9 C 1.46494 * 119.99924 * 179.97438 * 8 6 5
10 10 C 1.53003 * 109.47093 * 180.02562 * 9 8 6
11 11 H 1.08997 * 110.77580 * 51.76189 * 10 9 8
12 12 C 1.55154 * 110.72254 * 174.99951 * 10 9 8
13 13 C 1.54908 * 101.58289 * 153.86462 * 12 10 9
14 14 N 1.47425 * 104.92961 * 322.93718 * 13 12 10
15 15 C 1.36938 * 125.65179 * 204.15650 * 14 13 12
16 16 H 1.07995 * 120.00281 * 180.02562 * 15 14 13
17 17 C 1.38810 * 119.99650 * 0.02562 * 15 14 13
18 18 N 1.31621 * 120.00025 * 0.02562 * 17 15 14
19 19 Si 1.86799 * 120.00113 * 180.02562 * 17 15 14
20 20 H 1.48504 * 109.47166 * 59.99694 * 19 17 15
21 21 H 1.48493 * 109.47565 * 179.97438 * 19 17 15
22 22 H 1.48505 * 109.47135 * 300.00010 * 19 17 15
23 23 C 1.47290 * 108.55742 * 24.15407 * 14 13 12
24 24 C 1.39720 * 118.27650 * 0.27177 * 5 4 3
25 25 C 1.38737 * 119.07676 * 359.46040 * 24 5 4
26 26 O 1.35687 * 119.58600 * 180.29441 * 25 24 5
27 27 C 1.42899 * 117.00276 * 180.25791 * 26 25 24
28 28 N 1.32255 * 119.57992 * 0.02562 * 3 2 1
29 29 H 1.08999 * 109.47712 * 300.00613 * 1 2 3
30 30 H 1.09007 * 109.47064 * 60.00309 * 1 2 3
31 31 H 1.09003 * 109.47113 * 180.02562 * 1 2 3
32 32 H 1.08001 * 120.45844 * 359.97438 * 4 3 2
33 33 H 0.96994 * 119.99369 * 359.97438 * 8 6 5
34 34 H 1.09000 * 109.47310 * 60.00424 * 9 8 6
35 35 H 1.09004 * 109.47167 * 299.99783 * 9 8 6
36 36 H 1.09008 * 111.00345 * 35.78931 * 12 10 9
37 37 H 1.09000 * 111.03743 * 271.95898 * 12 10 9
38 38 H 1.09002 * 110.36632 * 81.83114 * 13 12 10
39 39 H 1.08995 * 110.36781 * 204.04351 * 13 12 10
40 40 H 0.97001 * 119.99611 * 180.02562 * 18 17 15
41 41 H 1.09004 * 109.85762 * 239.50064 * 23 14 13
42 42 H 1.08995 * 110.00297 * 118.43011 * 23 14 13
43 43 H 1.08003 * 120.46034 * 179.70920 * 24 5 4
44 44 H 1.08999 * 109.47256 * 59.99748 * 27 26 25
45 45 H 1.08996 * 109.47369 * 179.97438 * 27 26 25
46 46 H 1.09004 * 109.46861 * 299.99993 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0450 1.2089 0.0000
4 6 3.4310 1.2715 0.0005
5 6 4.0542 2.5220 0.0011
6 6 5.5317 2.6349 0.0011
7 8 6.2177 1.6319 0.0011
8 7 6.1148 3.8500 0.0011
9 6 7.5755 3.9615 0.0017
10 6 7.9742 5.4387 0.0022
11 1 7.4657 5.9761 0.8026
12 6 9.5129 5.5919 0.1293
13 6 9.7463 6.9630 -0.5528
14 7 8.7895 6.9972 -1.6740
15 6 8.9180 7.7508 -2.8101
16 1 8.1586 7.7058 -3.5766
17 6 10.0243 8.5725 -2.9765
18 7 10.9501 8.6269 -2.0425
19 14 10.1992 9.6010 -4.5259
20 1 9.0440 10.5275 -4.6382
21 1 11.4580 10.3860 -4.4596
22 1 10.2342 8.7077 -5.7118
23 6 7.6742 6.0857 -1.3664
24 6 3.2483 3.6633 0.0069
25 6 1.8689 3.5146 0.0005
26 8 1.0764 4.6160 -0.0001
27 6 -0.3360 4.3990 -0.0011
28 7 1.3166 2.3128 0.0005
29 1 -0.3634 0.5139 0.8899
30 1 -0.3633 0.5138 -0.8901
31 1 -0.3633 -1.0277 0.0005
32 1 4.0199 0.3662 0.0014
33 1 5.5672 4.6505 0.0007
34 1 7.9772 3.4767 -0.8881
35 1 7.9765 3.4770 0.8920
36 1 10.0304 4.7959 -0.4062
37 1 9.8183 5.6188 1.1753
38 1 9.5411 7.7741 0.1458
39 1 10.7686 7.0328 -0.9243
40 1 11.7229 9.2014 -2.1586
41 1 7.6040 5.3145 -2.1336
42 1 6.7395 6.6440 -1.3156
43 1 3.6929 4.6475 0.0122
44 1 -0.6178 3.8359 0.8886
45 1 -0.8512 5.3595 -0.0010
46 1 -0.6164 3.8360 -0.8914
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001028659469.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:04:03
Heat of formation + Delta-G solvation = -65.079762 kcal
Electronic energy + Delta-G solvation = -28297.085908 eV
Core-core repulsion = 24187.810104 eV
Total energy + Delta-G solvation = -4109.275804 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-42.22970 -40.82491 -39.98520 -39.26286 -37.99781 -36.17092 -34.47275 -33.65455
-31.77692 -31.44044 -29.91204 -28.88856 -27.58394 -27.34384 -25.90052 -24.62382
-24.18718 -22.24807 -21.64388 -21.22911 -19.99050 -19.04702 -18.82905 -17.86585
-17.62889 -17.50508 -17.05815 -16.76607 -16.64786 -16.55783 -16.41285 -16.00745
-15.83420 -15.53135 -14.86945 -14.74886 -14.44510 -14.24360 -14.08337 -13.56359
-13.46165 -13.36045 -13.12182 -12.98284 -12.81313 -12.64166 -12.59363 -12.58590
-12.04297 -11.91959 -11.80748 -11.75272 -11.58542 -11.50573 -11.30899 -11.03645
-11.02576 -10.71415 -10.18243 -9.36783 -8.85613 -7.75477 -5.19354 -0.52108
-0.00215 1.47367 1.50240 1.56606 1.63815 1.69000 1.99277 2.13450
2.50975 2.60474 3.06076 3.33664 3.52785 3.66142 3.75651 3.83034
3.90023 3.99684 4.08608 4.14648 4.37639 4.40040 4.40485 4.43461
4.47849 4.59703 4.68065 4.71893 4.72882 4.76034 4.82072 4.89801
4.94219 4.98763 5.06595 5.16524 5.28297 5.42158 5.49812 5.69623
5.72949 5.85642 6.21222 6.34176 6.36593 6.48560 6.99861 7.13394
7.81341 8.44896 9.25977
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.016282 B = 0.002265 C = 0.002095
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1719.294968 B =12357.500184 C =13359.883732
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.034 3.966
2 O -0.311 6.311
3 C 0.355 3.645
4 C -0.181 4.181
5 C -0.021 4.021
6 C 0.562 3.438
7 O -0.561 6.561
8 N -0.702 5.702
9 C 0.142 3.858
10 C -0.094 4.094
11 H 0.100 0.900
12 C -0.122 4.122
13 C 0.150 3.850
14 N -0.629 5.629
15 C -0.238 4.238
16 H 0.079 0.921
17 C -0.069 4.069
18 N -0.949 5.949
19 Si 0.979 3.021
20 H -0.278 1.278
21 H -0.294 1.294
22 H -0.279 1.279
23 C 0.134 3.866
24 C -0.193 4.193
25 C 0.354 3.646
26 O -0.308 6.308
27 C 0.034 3.966
28 N -0.580 5.580
29 H 0.062 0.938
30 H 0.060 0.940
31 H 0.124 0.876
32 H 0.153 0.847
33 H 0.415 0.585
34 H 0.060 0.940
35 H 0.084 0.916
36 H 0.063 0.937
37 H 0.091 0.909
38 H -0.009 1.009
39 H 0.070 0.930
40 H 0.247 0.753
41 H 0.022 0.978
42 H 0.030 0.970
43 H 0.168 0.832
44 H 0.062 0.938
45 H 0.123 0.877
46 H 0.060 0.940
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -23.962 -13.749 8.101 28.789
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.060 4.060
2 O -0.218 6.218
3 C 0.177 3.823
4 C -0.203 4.203
5 C -0.031 4.031
6 C 0.349 3.651
7 O -0.440 6.440
8 N -0.354 5.354
9 C 0.019 3.981
10 C -0.113 4.113
11 H 0.118 0.882
12 C -0.161 4.161
13 C 0.025 3.975
14 N -0.355 5.355
15 C -0.367 4.367
16 H 0.097 0.903
17 C -0.261 4.261
18 N -0.598 5.598
19 Si 0.807 3.193
20 H -0.204 1.204
21 H -0.220 1.220
22 H -0.205 1.205
23 C 0.009 3.991
24 C -0.214 4.214
25 C 0.176 3.824
26 O -0.214 6.214
27 C -0.060 4.060
28 N -0.320 5.320
29 H 0.080 0.920
30 H 0.079 0.921
31 H 0.143 0.857
32 H 0.171 0.829
33 H 0.252 0.748
34 H 0.078 0.922
35 H 0.102 0.898
36 H 0.082 0.918
37 H 0.109 0.891
38 H 0.009 0.991
39 H 0.088 0.912
40 H 0.056 0.944
41 H 0.040 0.960
42 H 0.048 0.952
43 H 0.186 0.814
44 H 0.080 0.920
45 H 0.141 0.859
46 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges -24.075 -14.347 8.001 29.145
hybrid contribution 0.476 1.161 -0.900 1.545
sum -23.598 -13.186 7.101 27.949
Atomic orbital electron populations
1.23159 0.75164 1.05096 1.02595 1.86295 1.24910 1.23319 1.87225
1.19201 0.88597 0.83950 0.90579 1.20965 0.91945 0.99160 1.08199
1.19713 0.92764 0.92976 0.97636 1.18103 0.86910 0.83568 0.76555
1.90783 1.65044 1.37284 1.50914 1.45865 1.08417 1.08003 1.73117
1.21342 0.78742 0.95464 1.02588 1.22299 0.97382 0.94186 0.97472
0.88208 1.22844 0.94236 0.97816 1.01171 1.21746 0.96155 0.92196
0.87389 1.44874 1.22517 1.49533 1.18584 1.19401 1.04666 1.17192
0.95467 0.90314 1.25622 0.97194 1.01838 1.01469 1.70046 1.12091
1.42914 1.34790 0.85144 0.76736 0.78342 0.79063 1.20392 1.21979
1.20475 1.21598 0.90728 0.91941 0.94788 1.21193 0.90601 1.00470
1.09141 1.19309 0.88725 0.84080 0.90328 1.86305 1.20995 1.26977
1.87166 1.23144 0.75679 1.04661 1.02549 1.66676 1.41834 0.98544
1.24979 0.91951 0.92106 0.85743 0.82928 0.74753 0.92179 0.89810
0.91811 0.89087 0.99148 0.91165 0.94374 0.96046 0.95183 0.81411
0.91951 0.85888 0.92165
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.38 10.38 113.37 1.18 1.56 16
2 O -0.31 -5.81 10.47 -90.02 -0.94 -6.75 16
3 C 0.35 7.49 7.48 84.75 0.63 8.12 16
4 C -0.18 -4.10 9.60 22.75 0.22 -3.88 16
5 C -0.02 -0.46 5.90 -19.92 -0.12 -0.58 16
6 C 0.56 14.59 7.80 86.88 0.68 15.26 16
7 O -0.56 -18.42 16.44 -3.76 -0.06 -18.49 16
8 N -0.70 -16.04 5.43 -465.65 -2.53 -18.57 16
9 C 0.14 3.69 5.02 86.38 0.43 4.13 16
10 C -0.09 -2.80 2.96 -9.60 -0.03 -2.83 16
11 H 0.10 2.59 8.14 -2.39 -0.02 2.58 16
12 C -0.12 -4.21 6.53 31.98 0.21 -4.00 16
13 C 0.15 7.22 5.89 86.85 0.51 7.74 16
14 N -0.63 -31.89 3.40 -691.31 -2.35 -34.24 16
15 C -0.24 -13.33 10.28 84.03 0.86 -12.47 16
16 H 0.08 4.23 7.83 -2.91 -0.02 4.20 16
17 C -0.07 -3.91 5.49 84.86 0.47 -3.44 16
18 N -0.95 -56.48 10.09 21.65 0.22 -56.27 16
19 Si 0.98 45.71 29.55 68.60 2.03 47.74 16
20 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16
21 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16
22 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16
23 C 0.13 5.18 6.77 86.68 0.59 5.76 16
24 C -0.19 -3.69 9.54 22.75 0.22 -3.48 16
25 C 0.35 7.02 7.48 84.75 0.63 7.65 16
26 O -0.31 -5.45 10.47 -90.06 -0.94 -6.39 16
27 C 0.03 0.38 10.38 113.37 1.18 1.56 16
28 N -0.58 -11.54 8.02 -422.18 -3.39 -14.93 16
29 H 0.06 0.66 8.10 -2.39 -0.02 0.64 16
30 H 0.06 0.66 8.10 -2.38 -0.02 0.65 16
31 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16
32 H 0.15 3.54 7.74 -2.91 -0.02 3.52 16
33 H 0.41 7.61 6.60 -92.71 -0.61 6.99 16
34 H 0.06 1.78 7.93 -2.39 -0.02 1.76 16
35 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16
36 H 0.06 2.22 8.05 -2.38 -0.02 2.20 16
37 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16
38 H -0.01 -0.49 8.14 -2.39 -0.02 -0.50 16
39 H 0.07 3.92 5.86 -2.39 -0.01 3.90 16
40 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16
41 H 0.02 0.85 7.68 -2.38 -0.02 0.83 16
42 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16
43 H 0.17 2.50 6.53 -2.91 -0.02 2.48 16
44 H 0.06 0.66 8.10 -2.39 -0.02 0.64 16
45 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16
46 H 0.06 0.67 8.10 -2.38 -0.02 0.65 16
Total: -1.00 -72.44 382.63 0.08 -72.36
By element:
Atomic # 1 Polarization: 14.04 SS G_CDS: 0.39 Total: 14.43 kcal
Atomic # 6 Polarization: 13.44 SS G_CDS: 7.66 Total: 21.10 kcal
Atomic # 7 Polarization: -115.96 SS G_CDS: -8.05 Total: -124.00 kcal
Atomic # 8 Polarization: -29.68 SS G_CDS: -1.95 Total: -31.63 kcal
Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal
Total: -72.44 0.08 -72.36 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001028659469.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 7.282 kcal
(2) G-P(sol) polarization free energy of solvation -72.441 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.159 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.079 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.362 kcal
(6) G-S(sol) free energy of system = (1) + (5) -65.080 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds