Wall clock time and date at job start Tue Mar 31 2020 19:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35712 * 116.99720 * 2 1 4 4 C 1.41934 * 126.87902 * 180.32545 * 3 2 1 5 5 C 1.35269 * 103.96110 * 180.13881 * 4 3 2 6 6 C 1.50698 * 126.70880 * 179.87666 * 5 4 3 7 7 C 1.53006 * 109.47114 * 89.70736 * 6 5 4 8 8 C 1.50698 * 109.47114 * 179.97438 * 7 6 5 9 9 O 1.21282 * 119.99985 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00143 * 180.02562 * 8 7 6 11 11 C 1.47169 * 120.71108 * 179.97438 * 10 8 7 12 12 C 1.53884 * 108.02819 * 132.78179 * 11 10 8 13 13 H 1.09005 * 112.09497 * 181.90748 * 12 11 10 14 14 C 1.54542 * 107.83355 * 306.49913 * 12 11 10 15 15 C 1.54827 * 104.74404 * 88.94458 * 14 12 11 16 16 C 1.54550 * 104.74433 * 0.02562 * 15 14 12 17 17 H 1.08999 * 112.68166 * 146.80338 * 16 15 14 18 18 C 1.47167 * 120.70845 * 0.02562 * 10 8 7 19 19 N 1.48306 * 107.21239 * 58.36028 * 12 11 10 20 20 C 1.36940 * 128.07917 * 106.70143 * 19 12 11 21 21 H 1.07999 * 119.99832 * 164.82612 * 20 19 12 22 22 C 1.38810 * 119.99536 * 344.82803 * 20 19 12 23 23 N 1.31615 * 120.00663 * 350.67194 * 22 20 19 24 24 Si 1.86811 * 119.99487 * 170.68035 * 22 20 19 25 25 H 1.48504 * 109.46696 * 179.97438 * 24 22 20 26 26 H 1.48496 * 109.47138 * 299.99637 * 24 22 20 27 27 H 1.48502 * 109.46997 * 59.99986 * 24 22 20 28 28 O 1.34080 * 106.58125 * 359.61078 * 5 4 3 29 29 N 1.20914 * 111.71707 * 0.26459 * 28 5 4 30 30 H 1.09007 * 109.47353 * 60.00255 * 1 2 3 31 31 H 1.08998 * 109.47375 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47450 * 300.00408 * 1 2 3 33 33 H 1.08005 * 128.01886 * 0.02562 * 4 3 2 34 34 H 1.09000 * 109.47446 * 329.71335 * 6 5 4 35 35 H 1.09000 * 109.47431 * 209.70727 * 6 5 4 36 36 H 1.08995 * 109.47148 * 60.00128 * 7 6 5 37 37 H 1.08997 * 109.47413 * 300.00025 * 7 6 5 38 38 H 1.08994 * 109.74574 * 13.15116 * 11 10 8 39 39 H 1.08994 * 109.79067 * 252.43618 * 11 10 8 40 40 H 1.09004 * 110.36967 * 207.91480 * 14 12 11 41 41 H 1.09008 * 110.36410 * 330.23094 * 14 12 11 42 42 H 1.08996 * 110.31050 * 241.25204 * 15 14 12 43 43 H 1.09005 * 110.61026 * 118.91357 * 15 14 12 44 44 H 1.09003 * 109.75042 * 346.85537 * 18 10 8 45 45 H 1.09005 * 109.74933 * 107.58712 * 18 10 8 46 46 H 0.96994 * 120.00482 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2092 0.0000 4 6 3.4433 1.4528 -0.0064 5 6 3.5395 2.8021 -0.0003 6 6 4.8087 3.6146 -0.0006 7 6 5.2374 3.8904 -1.4433 8 6 6.5062 4.7035 -1.4436 9 8 7.0175 5.0298 -0.3934 10 7 7.0727 5.0680 -2.6109 11 6 8.3114 5.8624 -2.6294 12 6 9.2811 5.2094 -3.6301 13 1 10.2385 5.7289 -3.6718 14 6 9.4275 3.7202 -3.2442 15 6 8.2953 2.9999 -4.0165 16 6 7.5740 4.1232 -4.7953 17 1 7.1848 3.7856 -5.7559 18 6 6.4653 4.6809 -3.8942 19 7 8.6002 5.1828 -4.9474 20 6 8.8557 5.9594 -6.0460 21 1 8.4591 5.6779 -7.0102 22 6 9.6243 7.1084 -5.9200 23 7 9.9534 7.5525 -4.7256 24 14 10.1915 8.0245 -7.4461 25 1 10.9911 9.2094 -7.0435 26 1 11.0259 7.1245 -8.2822 27 1 9.0079 8.4682 -8.2256 28 8 2.2850 3.2752 0.0002 29 7 1.4700 2.3820 0.0003 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 4.2447 0.7288 -0.0128 34 1 5.5949 3.0608 0.5124 35 1 4.6352 4.5598 0.5138 36 1 4.4513 4.4442 -1.9563 37 1 5.4110 2.9452 -1.9577 38 1 8.7584 5.8709 -1.6354 39 1 8.0907 6.8828 -2.9427 40 1 10.4018 3.3420 -3.5539 41 1 9.2937 3.5917 -2.1700 42 1 7.6083 2.5196 -3.3199 43 1 8.7092 2.2652 -4.7073 44 1 5.7057 3.9173 -3.7268 45 1 6.0134 5.5536 -4.3659 46 1 10.4908 8.3552 -4.6377 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029325303.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:24 Heat of formation + Delta-G solvation = 30.447180 kcal Electronic energy + Delta-G solvation = -29482.769802 eV Core-core repulsion = 25377.636357 eV Total energy + Delta-G solvation = -4105.133445 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -45.08044 -40.10834 -39.08517 -37.99548 -34.80021 -33.80024 -33.01597 -32.38702 -31.02549 -30.18109 -29.27701 -27.91991 -26.53511 -24.93416 -23.85434 -23.61258 -23.23170 -21.30971 -19.88654 -19.60071 -18.52179 -18.18080 -17.83541 -17.01899 -16.92046 -16.20093 -15.77207 -15.74194 -15.31419 -15.03584 -14.74007 -14.62984 -14.05299 -13.77034 -13.38592 -13.16559 -13.02117 -12.82226 -12.70359 -12.49704 -12.22122 -12.14850 -11.84251 -11.74897 -11.61507 -11.51035 -11.12095 -11.00306 -10.89225 -10.83823 -10.37385 -10.08835 -9.91264 -9.83008 -9.69133 -9.58444 -9.46876 -9.26467 -8.80670 -8.08844 -6.88107 -5.87514 -3.23521 1.20419 2.05538 2.50086 2.89596 3.03679 3.33861 3.39400 3.40249 3.58831 3.99286 4.38194 4.54622 4.71412 4.74811 4.80625 4.82214 4.90079 5.02665 5.12592 5.18460 5.25429 5.29116 5.42897 5.56075 5.59726 5.64729 5.71427 5.78376 5.79337 5.90446 5.92062 6.18434 6.29334 6.35991 6.49235 6.60641 6.66646 6.70594 6.76582 6.83893 6.94883 7.26818 7.46764 7.66446 8.03117 8.04074 8.10967 8.63154 9.01953 9.64208 10.40375 11.25173 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.023415 B = 0.002428 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.503519 B =11527.583617 C =11754.795050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.285 6.285 3 C 0.207 3.793 4 C -0.235 4.235 5 C 0.007 3.993 6 C -0.026 4.026 7 C -0.137 4.137 8 C 0.507 3.493 9 O -0.560 6.560 10 N -0.589 5.589 11 C 0.111 3.889 12 C 0.167 3.833 13 H 0.119 0.881 14 C -0.136 4.136 15 C -0.122 4.122 16 C 0.132 3.868 17 H 0.078 0.922 18 C 0.092 3.908 19 N -0.583 5.583 20 C -0.229 4.229 21 H 0.076 0.924 22 C -0.002 4.002 23 N -0.913 5.913 24 Si 0.912 3.088 25 H -0.290 1.290 26 H -0.285 1.285 27 H -0.285 1.285 28 O 0.099 5.901 29 N -0.413 5.413 30 H 0.059 0.941 31 H 0.104 0.896 32 H 0.058 0.942 33 H 0.179 0.821 34 H 0.109 0.891 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.051 0.949 43 H 0.055 0.945 44 H 0.066 0.934 45 H 0.066 0.934 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.020 -12.717 7.772 19.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.191 6.191 3 C 0.010 3.990 4 C -0.257 4.257 5 C -0.056 4.056 6 C -0.064 4.064 7 C -0.178 4.178 8 C 0.295 3.705 9 O -0.440 6.440 10 N -0.320 5.320 11 C -0.012 4.012 12 C 0.059 3.941 13 H 0.137 0.863 14 C -0.175 4.175 15 C -0.161 4.161 16 C 0.024 3.976 17 H 0.096 0.904 18 C -0.033 4.033 19 N -0.304 5.304 20 C -0.357 4.357 21 H 0.094 0.906 22 C -0.199 4.199 23 N -0.558 5.558 24 Si 0.743 3.257 25 H -0.216 1.216 26 H -0.212 1.212 27 H -0.211 1.211 28 O 0.039 5.961 29 N -0.140 5.140 30 H 0.077 0.923 31 H 0.123 0.877 32 H 0.077 0.923 33 H 0.196 0.804 34 H 0.127 0.873 35 H 0.118 0.882 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.074 0.926 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -13.766 -12.165 8.186 20.113 hybrid contribution 0.500 0.045 -0.882 1.015 sum -13.266 -12.120 7.304 19.397 Atomic orbital electron populations 1.23053 0.76949 1.03998 1.02334 1.86189 1.22500 1.21019 1.89429 1.22032 0.90991 0.85676 1.00349 1.21817 0.94230 0.95761 1.13884 1.24454 0.88267 0.93279 0.99642 1.19977 0.88294 1.00422 0.97710 1.21667 0.97262 1.01798 0.97048 1.20263 0.85658 0.80726 0.83888 1.90661 1.64857 1.57521 1.30965 1.48230 1.26416 1.52340 1.05034 1.22461 0.83557 0.95276 0.99928 1.21913 0.97154 0.91033 0.83976 0.86322 1.22718 0.97569 0.98863 0.98343 1.22563 0.97786 0.97531 0.98254 1.21851 0.89930 0.90259 0.95598 0.90398 1.22497 0.96355 0.99579 0.84872 1.45164 1.34394 1.39716 1.11158 1.18942 1.29074 1.01563 0.86113 0.90633 1.24845 1.01628 0.96702 0.96759 1.69813 1.41427 1.24143 1.20449 0.86207 0.78460 0.79043 0.82033 1.21590 1.21161 1.21112 1.84811 1.12354 1.29962 1.68934 1.74130 1.15795 0.96701 1.27368 0.92254 0.87720 0.92325 0.80380 0.87316 0.88172 0.88612 0.88560 0.91234 0.90255 0.92825 0.92815 0.93073 0.92648 0.91543 0.91546 0.93363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.73 101.05 1.08 1.32 16 2 O -0.28 -3.07 10.57 -18.84 -0.20 -3.27 16 3 C 0.21 2.44 8.01 -16.66 -0.13 2.31 16 4 C -0.24 -2.40 11.10 -39.23 -0.44 -2.84 16 5 C 0.01 0.07 6.73 -35.37 -0.24 -0.16 16 6 C -0.03 -0.26 5.07 -27.88 -0.14 -0.40 16 7 C -0.14 -1.54 4.06 -27.88 -0.11 -1.65 16 8 C 0.51 8.12 7.70 -10.99 -0.08 8.04 16 9 O -0.56 -10.63 15.45 5.56 0.09 -10.55 16 10 N -0.59 -10.36 2.25 -171.84 -0.39 -10.75 16 11 C 0.11 2.33 5.81 -3.22 -0.02 2.31 16 12 C 0.17 3.64 3.14 -65.67 -0.21 3.43 16 13 H 0.12 2.98 6.34 -51.93 -0.33 2.65 16 14 C -0.14 -2.50 6.21 -24.96 -0.16 -2.65 16 15 C -0.12 -1.99 6.21 -24.95 -0.15 -2.15 16 16 C 0.13 2.39 4.28 -65.93 -0.28 2.10 16 17 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 18 C 0.09 1.49 5.76 -3.48 -0.02 1.47 16 19 N -0.58 -13.26 2.81 -152.91 -0.43 -13.69 16 20 C -0.23 -5.81 10.37 -15.06 -0.16 -5.96 16 21 H 0.08 1.86 7.85 -52.49 -0.41 1.45 16 22 C 0.00 -0.05 5.42 -17.43 -0.09 -0.14 16 23 N -0.91 -24.56 10.40 55.49 0.58 -23.99 16 24 Si 0.91 20.84 29.56 -169.99 -5.03 15.81 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 26 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 27 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 28 O 0.10 1.20 11.19 17.07 0.19 1.39 16 29 N -0.41 -5.23 11.54 30.38 0.35 -4.88 16 30 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 31 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.18 1.42 8.06 -52.48 -0.42 1.00 16 34 H 0.11 1.05 8.10 -51.93 -0.42 0.63 16 35 H 0.10 1.05 8.10 -51.93 -0.42 0.63 16 36 H 0.10 0.99 8.06 -51.93 -0.42 0.58 16 37 H 0.10 0.94 7.59 -51.93 -0.39 0.54 16 38 H 0.07 1.48 7.11 -51.93 -0.37 1.11 16 39 H 0.08 1.92 7.82 -51.93 -0.41 1.52 16 40 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.05 0.96 7.84 -51.92 -0.41 0.56 16 42 H 0.05 0.73 7.83 -51.93 -0.41 0.33 16 43 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.07 0.82 6.09 -51.93 -0.32 0.51 16 45 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 46 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 371.79 15.07 5.60 5.60 Total: -1.00 -29.91 371.79 -7.20 -37.11 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -6.82 Total: 2.19 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: -1.15 Total: 5.01 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: 0.11 Total: -53.30 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: 0.08 Total: -12.43 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.03 Total: 15.81 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.91 -7.20 -37.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029325303.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.559 kcal (2) G-P(sol) polarization free energy of solvation -29.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds