Wall clock time and date at job start Tue Mar 31 2020 18:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35498 * 117.00245 * 2 1 4 4 C 1.39213 * 120.90432 * 359.97438 * 3 2 1 5 5 C 1.37898 * 119.39353 * 180.02562 * 4 3 2 6 6 N 1.32069 * 121.29482 * 0.02562 * 5 4 3 7 7 C 1.32187 * 121.97647 * 359.97438 * 6 5 4 8 8 O 1.35431 * 119.77925 * 180.02562 * 7 6 5 9 9 C 1.42905 * 116.99723 * 359.97438 * 8 7 6 10 10 C 1.40292 * 120.44627 * 0.02562 * 7 6 5 11 11 C 1.47235 * 120.65242 * 180.26993 * 10 7 6 12 12 O 1.21622 * 119.99769 * 269.71934 * 11 10 7 13 13 N 1.34771 * 119.99906 * 89.72184 * 11 10 7 14 14 C 1.46500 * 120.00154 * 359.97438 * 13 11 10 15 15 C 1.46497 * 120.00010 * 179.97438 * 13 11 10 16 16 H 1.09000 * 110.88463 * 3.87691 * 15 13 11 17 17 C 1.55161 * 111.00331 * 240.00029 * 15 13 11 18 18 C 1.54322 * 102.93978 * 277.42560 * 17 15 13 19 19 N 1.47022 * 107.27410 * 337.80587 * 18 17 15 20 20 C 1.36939 * 125.64912 * 178.89159 * 19 18 17 21 21 H 1.07997 * 120.00261 * 174.96901 * 20 19 18 22 22 C 1.38813 * 119.99961 * 354.97414 * 20 19 18 23 23 N 1.31621 * 120.00030 * 7.06261 * 22 20 19 24 24 Si 1.86798 * 119.99973 * 187.06995 * 22 20 19 25 25 H 1.48500 * 109.47572 * 94.98551 * 24 22 20 26 26 H 1.48503 * 109.46938 * 214.98401 * 24 22 20 27 27 H 1.48499 * 109.46931 * 334.97924 * 24 22 20 28 28 C 1.47420 * 108.70315 * 358.94141 * 19 18 17 29 29 H 1.08996 * 109.47672 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46886 * 299.99743 * 1 2 3 31 31 H 1.08995 * 109.47454 * 59.99160 * 1 2 3 32 32 H 1.08004 * 120.30068 * 359.97438 * 4 3 2 33 33 H 1.08002 * 119.35312 * 179.97438 * 5 4 3 34 34 H 1.09001 * 109.46800 * 179.97438 * 9 8 7 35 35 H 1.08999 * 109.47252 * 299.99732 * 9 8 7 36 36 H 1.09000 * 109.47263 * 60.00119 * 9 8 7 37 37 H 1.09003 * 109.47298 * 89.99706 * 14 13 11 38 38 H 1.08999 * 109.47518 * 210.00131 * 14 13 11 39 39 H 1.08998 * 109.47321 * 330.00153 * 14 13 11 40 40 H 1.08997 * 110.72143 * 35.79116 * 17 15 13 41 41 H 1.09001 * 110.71822 * 158.88689 * 17 15 13 42 42 H 1.08994 * 109.88155 * 97.22947 * 18 17 15 43 43 H 1.09007 * 109.87959 * 218.23501 * 18 17 15 44 44 H 0.96997 * 120.00224 * 179.97438 * 23 22 20 45 45 H 1.08996 * 110.36959 * 265.29322 * 28 19 18 46 46 H 1.08998 * 110.36419 * 142.96104 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 6 1.3045 2.3867 -0.0005 5 6 1.9628 3.5984 -0.0011 6 7 3.2819 3.6625 -0.0016 7 6 4.0355 2.5765 -0.0011 8 8 5.3847 2.6940 -0.0011 9 6 5.9205 4.0188 -0.0022 10 6 3.4472 1.3029 -0.0006 11 6 4.2822 0.0902 0.0059 12 8 4.6273 -0.4160 -1.0447 13 7 4.6640 -0.4587 1.1760 14 6 4.2487 0.1514 2.4415 15 6 5.4944 -1.6656 1.1825 16 1 5.7715 -1.9521 0.1680 17 6 4.7761 -2.8310 1.9129 18 6 5.0777 -2.5455 3.3991 19 7 6.2799 -1.7005 3.4462 20 6 6.8650 -1.2075 4.5819 21 1 7.7946 -0.6617 4.5172 22 6 6.2632 -1.4093 5.8164 23 7 5.2080 -2.1899 5.9144 24 14 6.9508 -0.5730 7.3386 25 1 6.2141 0.6930 7.5833 26 1 6.7939 -1.4714 8.5105 27 1 8.3910 -0.2757 7.1321 28 6 6.7504 -1.4707 2.0681 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8898 32 1 0.2250 2.3529 -0.0014 33 1 1.3883 4.5130 -0.0019 34 1 7.0094 3.9703 -0.0017 35 1 5.5805 4.5475 -0.8927 36 1 5.5803 4.5491 0.8873 37 1 3.2990 -0.2797 2.7584 38 1 5.0058 -0.0386 3.2023 39 1 4.1321 1.2266 2.3055 40 1 3.7029 -2.8010 1.7244 41 1 5.1928 -3.7914 1.6095 42 1 4.2375 -2.0207 3.8537 43 1 5.2591 -3.4819 3.9270 44 1 4.7876 -2.3313 6.7770 45 1 7.5179 -2.1979 1.8031 46 1 7.1351 -0.4563 1.9628 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033262789.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:31 Heat of formation + Delta-G solvation = -20.578689 kcal Electronic energy + Delta-G solvation = -30841.259944 eV Core-core repulsion = 26733.913851 eV Total energy + Delta-G solvation = -4107.346093 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.22212 -39.31514 -39.27558 -37.39765 -37.23149 -34.09677 -32.45771 -31.58640 -30.86666 -29.24590 -28.12981 -27.75340 -26.95774 -25.93234 -24.84034 -23.91402 -22.62891 -21.03874 -20.02818 -19.17542 -18.61587 -17.79318 -17.19369 -16.86688 -16.67424 -16.26262 -15.89077 -15.77779 -15.29419 -14.72814 -14.63833 -14.45263 -14.01165 -13.80671 -13.76700 -13.36509 -13.21800 -12.73709 -12.49793 -11.97478 -11.95209 -11.91457 -11.86414 -11.65777 -11.63871 -11.43532 -11.23030 -10.92127 -10.89174 -10.65809 -10.31638 -10.11468 -10.05767 -9.88994 -9.64751 -9.35118 -9.05534 -8.67748 -8.63589 -8.05813 -6.79123 -5.74425 -3.07229 0.82956 1.14221 2.52203 2.91774 3.30693 3.38008 3.39437 3.44560 3.45937 3.62081 4.16749 4.44109 4.48312 4.70876 4.83138 4.86891 4.89650 5.18397 5.20239 5.25835 5.26614 5.44385 5.46026 5.48187 5.57584 5.61096 5.71580 5.78455 5.85177 5.90832 5.97865 6.24426 6.30429 6.43020 6.60773 6.62176 6.72430 6.87939 6.92191 7.08168 7.20329 7.56521 7.63775 7.65361 7.82317 7.94228 8.22952 8.58228 9.19843 9.79551 10.46169 11.36896 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011939 B = 0.004164 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.700206 B = 6723.095546 C = 7235.065041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.295 6.295 3 C 0.232 3.768 4 C -0.300 4.300 5 C 0.185 3.815 6 N -0.561 5.561 7 C 0.386 3.614 8 O -0.292 6.292 9 C 0.041 3.959 10 C -0.222 4.222 11 C 0.584 3.416 12 O -0.546 6.546 13 N -0.574 5.574 14 C 0.071 3.929 15 C 0.124 3.876 16 H 0.099 0.901 17 C -0.155 4.155 18 C 0.174 3.826 19 N -0.602 5.602 20 C -0.230 4.230 21 H 0.078 0.922 22 C -0.004 4.004 23 N -0.918 5.918 24 Si 0.907 3.093 25 H -0.289 1.289 26 H -0.292 1.292 27 H -0.281 1.281 28 C 0.125 3.875 29 H 0.107 0.893 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.146 0.854 33 H 0.165 0.835 34 H 0.099 0.901 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.046 0.954 38 H 0.125 0.875 39 H 0.045 0.955 40 H 0.062 0.938 41 H 0.067 0.933 42 H 0.051 0.949 43 H 0.040 0.960 44 H 0.252 0.748 45 H 0.032 0.968 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.123 10.274 -11.813 18.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.205 6.205 3 C 0.177 3.823 4 C -0.322 4.322 5 C 0.030 3.970 6 N -0.289 5.289 7 C 0.207 3.793 8 O -0.197 6.197 9 C -0.054 4.054 10 C -0.229 4.229 11 C 0.370 3.630 12 O -0.424 6.424 13 N -0.304 5.304 14 C -0.072 4.072 15 C 0.020 3.980 16 H 0.117 0.883 17 C -0.194 4.194 18 C 0.050 3.950 19 N -0.329 5.329 20 C -0.358 4.358 21 H 0.096 0.904 22 C -0.201 4.201 23 N -0.565 5.565 24 Si 0.738 3.262 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.206 1.206 28 C -0.002 4.002 29 H 0.125 0.875 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.164 0.836 33 H 0.182 0.818 34 H 0.117 0.883 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.065 0.935 38 H 0.143 0.857 39 H 0.063 0.937 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.069 0.931 43 H 0.058 0.942 44 H 0.062 0.938 45 H 0.049 0.951 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.253 10.341 -12.096 18.408 hybrid contribution -0.532 0.053 1.011 1.143 sum -9.785 10.394 -11.086 18.074 Atomic orbital electron populations 1.23223 0.77109 1.04826 1.01758 1.86109 1.22295 1.25616 1.86487 1.18830 0.89858 0.85183 0.88418 1.21947 1.01666 0.92473 1.16121 1.22224 0.88493 0.97230 0.89075 1.67414 1.07943 1.30353 1.23154 1.19328 0.84594 0.87432 0.87959 1.86290 1.15197 1.31835 1.86377 1.22946 0.98827 0.81098 1.02514 1.18938 0.91408 0.93762 1.18746 1.17447 0.79145 0.82531 0.83904 1.90730 1.56884 1.63252 1.31536 1.47564 1.49862 1.27139 1.05794 1.22139 1.02669 0.95546 0.86852 1.22254 0.91587 0.84138 0.99987 0.88264 1.23240 0.99782 0.96962 0.99417 1.21222 0.89886 0.95062 0.88841 1.44612 1.29899 1.58467 0.99967 1.19051 1.04314 1.28590 0.83835 0.90408 1.24787 0.97939 0.99911 0.97475 1.69988 1.23301 1.39703 1.23510 0.86164 0.78244 0.78873 0.82911 1.21657 1.21827 1.20646 1.21903 0.93423 0.98823 0.86005 0.87517 0.91904 0.92128 0.83627 0.81754 0.88250 0.92125 0.91887 0.93492 0.85739 0.93667 0.91899 0.91427 0.93079 0.94165 0.93769 0.95078 0.93565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.84 101.05 0.99 1.20 16 2 O -0.30 -4.12 10.03 -18.19 -0.18 -4.30 16 3 C 0.23 3.31 6.74 -38.32 -0.26 3.05 16 4 C -0.30 -3.16 9.09 -39.34 -0.36 -3.51 16 5 C 0.19 1.92 11.15 -17.57 -0.20 1.73 16 6 N -0.56 -7.52 9.20 -13.06 -0.12 -7.64 16 7 C 0.39 6.15 7.07 -16.63 -0.12 6.03 16 8 O -0.29 -4.69 9.93 -17.99 -0.18 -4.86 16 9 C 0.04 0.47 10.38 101.05 1.05 1.52 16 10 C -0.22 -3.79 3.95 -104.57 -0.41 -4.20 16 11 C 0.58 11.62 6.28 -12.61 -0.08 11.54 16 12 O -0.55 -12.25 16.49 5.26 0.09 -12.16 16 13 N -0.57 -11.33 2.91 -172.81 -0.50 -11.83 16 14 C 0.07 1.39 8.51 59.85 0.51 1.90 16 15 C 0.12 2.48 3.66 -65.78 -0.24 2.24 16 16 H 0.10 1.97 7.02 -51.93 -0.36 1.60 16 17 C -0.15 -3.06 6.48 -24.90 -0.16 -3.22 16 18 C 0.17 4.14 4.34 -3.07 -0.01 4.13 16 19 N -0.60 -14.85 1.88 -170.08 -0.32 -15.17 16 20 C -0.23 -6.17 9.77 -15.06 -0.15 -6.32 16 21 H 0.08 2.05 7.84 -52.49 -0.41 1.64 16 22 C 0.00 -0.12 5.48 -17.43 -0.10 -0.22 16 23 N -0.92 -26.00 10.36 55.49 0.57 -25.42 16 24 Si 0.91 21.57 29.56 -169.99 -5.02 16.55 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 28 C 0.13 2.68 6.40 -2.53 -0.02 2.66 16 29 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.42 7.71 -51.93 -0.40 0.02 16 31 H 0.06 0.38 7.70 -51.93 -0.40 -0.02 16 32 H 0.15 1.01 6.45 -52.48 -0.34 0.68 16 33 H 0.17 1.04 8.06 -52.49 -0.42 0.62 16 34 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 36 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 37 H 0.05 0.91 7.90 -51.93 -0.41 0.50 16 38 H 0.12 2.85 4.73 -51.93 -0.25 2.60 16 39 H 0.04 0.83 6.54 -51.93 -0.34 0.49 16 40 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 42 H 0.05 1.31 6.27 -51.93 -0.33 0.99 16 43 H 0.04 1.06 7.60 -51.92 -0.39 0.67 16 44 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 45 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 372.01 15.07 5.61 5.61 Total: -1.00 -33.71 372.01 -6.17 -39.88 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -6.57 Total: 0.82 kcal Atomic # 6 Polarization: 18.07 SS G_CDS: 0.46 Total: 18.53 kcal Atomic # 7 Polarization: -59.70 SS G_CDS: -0.37 Total: -60.06 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -0.27 Total: -21.32 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.71 -6.17 -39.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033262789.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.303 kcal (2) G-P(sol) polarization free energy of solvation -33.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds