Wall clock time and date at job start Tue Mar 31 2020 18:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35498 * 117.00245 * 2 1 4 4 C 1.39213 * 120.90432 * 359.97438 * 3 2 1 5 5 C 1.37898 * 119.39353 * 180.02562 * 4 3 2 6 6 N 1.32069 * 121.29482 * 0.02562 * 5 4 3 7 7 C 1.32187 * 121.97647 * 359.97438 * 6 5 4 8 8 O 1.35431 * 119.77925 * 180.02562 * 7 6 5 9 9 C 1.42905 * 116.99723 * 359.97438 * 8 7 6 10 10 C 1.40292 * 120.44627 * 0.02562 * 7 6 5 11 11 C 1.47235 * 120.65242 * 180.26993 * 10 7 6 12 12 O 1.21622 * 119.99769 * 269.71934 * 11 10 7 13 13 N 1.34771 * 119.99906 * 89.72184 * 11 10 7 14 14 C 1.46500 * 120.00154 * 359.97438 * 13 11 10 15 15 C 1.46497 * 120.00010 * 179.97438 * 13 11 10 16 16 H 1.09000 * 110.88463 * 3.87691 * 15 13 11 17 17 C 1.55161 * 111.00331 * 240.00029 * 15 13 11 18 18 C 1.54322 * 102.93978 * 277.42560 * 17 15 13 19 19 N 1.47022 * 107.27410 * 337.80587 * 18 17 15 20 20 C 1.36939 * 125.64912 * 178.89159 * 19 18 17 21 21 H 1.07997 * 120.00261 * 174.96901 * 20 19 18 22 22 C 1.38813 * 119.99961 * 354.97414 * 20 19 18 23 23 N 1.31621 * 120.00030 * 7.06261 * 22 20 19 24 24 Si 1.86798 * 119.99973 * 187.06995 * 22 20 19 25 25 H 1.48500 * 109.47572 * 94.98551 * 24 22 20 26 26 H 1.48503 * 109.46938 * 214.98401 * 24 22 20 27 27 H 1.48499 * 109.46931 * 334.97924 * 24 22 20 28 28 C 1.47420 * 108.70315 * 358.94141 * 19 18 17 29 29 H 1.08996 * 109.47672 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46886 * 299.99743 * 1 2 3 31 31 H 1.08995 * 109.47454 * 59.99160 * 1 2 3 32 32 H 1.08004 * 120.30068 * 359.97438 * 4 3 2 33 33 H 1.08002 * 119.35312 * 179.97438 * 5 4 3 34 34 H 1.09001 * 109.46800 * 179.97438 * 9 8 7 35 35 H 1.08999 * 109.47252 * 299.99732 * 9 8 7 36 36 H 1.09000 * 109.47263 * 60.00119 * 9 8 7 37 37 H 1.09003 * 109.47298 * 89.99706 * 14 13 11 38 38 H 1.08999 * 109.47518 * 210.00131 * 14 13 11 39 39 H 1.08998 * 109.47321 * 330.00153 * 14 13 11 40 40 H 1.08997 * 110.72143 * 35.79116 * 17 15 13 41 41 H 1.09001 * 110.71822 * 158.88689 * 17 15 13 42 42 H 1.08994 * 109.88155 * 97.22947 * 18 17 15 43 43 H 1.09007 * 109.87959 * 218.23501 * 18 17 15 44 44 H 0.96997 * 120.00224 * 179.97438 * 23 22 20 45 45 H 1.08996 * 110.36959 * 265.29322 * 28 19 18 46 46 H 1.08998 * 110.36419 * 142.96104 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 6 1.3045 2.3867 -0.0005 5 6 1.9628 3.5984 -0.0011 6 7 3.2819 3.6625 -0.0016 7 6 4.0355 2.5765 -0.0011 8 8 5.3847 2.6940 -0.0011 9 6 5.9205 4.0188 -0.0022 10 6 3.4472 1.3029 -0.0006 11 6 4.2822 0.0902 0.0059 12 8 4.6273 -0.4160 -1.0447 13 7 4.6640 -0.4587 1.1760 14 6 4.2487 0.1514 2.4415 15 6 5.4944 -1.6656 1.1825 16 1 5.7715 -1.9521 0.1680 17 6 4.7761 -2.8310 1.9129 18 6 5.0777 -2.5455 3.3991 19 7 6.2799 -1.7005 3.4462 20 6 6.8650 -1.2075 4.5819 21 1 7.7946 -0.6617 4.5172 22 6 6.2632 -1.4093 5.8164 23 7 5.2080 -2.1899 5.9144 24 14 6.9508 -0.5730 7.3386 25 1 6.2141 0.6930 7.5833 26 1 6.7939 -1.4714 8.5105 27 1 8.3910 -0.2757 7.1321 28 6 6.7504 -1.4707 2.0681 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8898 32 1 0.2250 2.3529 -0.0014 33 1 1.3883 4.5130 -0.0019 34 1 7.0094 3.9703 -0.0017 35 1 5.5805 4.5475 -0.8927 36 1 5.5803 4.5491 0.8873 37 1 3.2990 -0.2797 2.7584 38 1 5.0058 -0.0386 3.2023 39 1 4.1321 1.2266 2.3055 40 1 3.7029 -2.8010 1.7244 41 1 5.1928 -3.7914 1.6095 42 1 4.2375 -2.0207 3.8537 43 1 5.2591 -3.4819 3.9270 44 1 4.7876 -2.3313 6.7770 45 1 7.5179 -2.1979 1.8031 46 1 7.1351 -0.4563 1.9628 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033262789.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:30 Heat of formation + Delta-G solvation = -44.528966 kcal Electronic energy + Delta-G solvation = -30842.298506 eV Core-core repulsion = 26733.913851 eV Total energy + Delta-G solvation = -4108.384655 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.29245 -40.82768 -40.24971 -38.94751 -38.35662 -35.83504 -34.17314 -32.87142 -31.83072 -31.09748 -29.50785 -28.90037 -27.82809 -27.56262 -26.46992 -25.37237 -23.57431 -22.48945 -21.94884 -20.42795 -19.87179 -18.95498 -18.76306 -18.51086 -17.75582 -17.48484 -17.17459 -16.66769 -16.65329 -16.16586 -16.08457 -15.85786 -15.59643 -15.27293 -14.84897 -14.56654 -14.28650 -14.23115 -13.87462 -13.74590 -13.53310 -13.44397 -13.16504 -12.82132 -12.81516 -12.78933 -12.61866 -12.46351 -12.36024 -12.15965 -12.00851 -11.98477 -11.84771 -11.56223 -11.31928 -10.68132 -10.67420 -10.04775 -9.74191 -9.68170 -8.79466 -7.82923 -5.17283 -0.15058 0.17162 1.43652 1.49038 1.49326 1.58254 1.62572 1.97651 2.42703 2.51105 2.58588 3.23372 3.36418 3.45819 3.64533 3.73216 3.86427 3.95471 3.98588 4.14380 4.25690 4.29664 4.32767 4.37292 4.37670 4.42054 4.56014 4.60069 4.63595 4.70027 4.70343 4.75405 4.86367 4.89183 4.94680 5.02566 5.12415 5.16843 5.49413 5.55589 5.67661 5.79346 6.06345 6.11303 6.19913 6.38289 6.71206 7.05110 7.12351 7.77024 8.42911 9.27371 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011939 B = 0.004164 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.700206 B = 6723.095546 C = 7235.065041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.327 6.327 3 C 0.224 3.776 4 C -0.286 4.286 5 C 0.191 3.809 6 N -0.566 5.566 7 C 0.374 3.626 8 O -0.323 6.323 9 C 0.038 3.962 10 C -0.264 4.264 11 C 0.587 3.413 12 O -0.580 6.580 13 N -0.576 5.576 14 C 0.091 3.909 15 C 0.130 3.870 16 H 0.105 0.895 17 C -0.139 4.139 18 C 0.189 3.811 19 N -0.614 5.614 20 C -0.240 4.240 21 H 0.079 0.921 22 C -0.053 4.053 23 N -0.944 5.944 24 Si 0.970 3.030 25 H -0.286 1.286 26 H -0.297 1.297 27 H -0.272 1.272 28 C 0.128 3.872 29 H 0.116 0.884 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.188 0.812 33 H 0.214 0.786 34 H 0.115 0.885 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.044 0.956 38 H 0.094 0.906 39 H 0.056 0.944 40 H 0.070 0.930 41 H 0.087 0.913 42 H 0.027 0.973 43 H 0.008 0.992 44 H 0.247 0.753 45 H 0.042 0.958 46 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.742 12.210 -12.389 20.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.238 6.238 3 C 0.169 3.831 4 C -0.307 4.307 5 C 0.037 3.963 6 N -0.295 5.295 7 C 0.195 3.805 8 O -0.229 6.229 9 C -0.056 4.056 10 C -0.271 4.271 11 C 0.375 3.625 12 O -0.461 6.461 13 N -0.306 5.306 14 C -0.052 4.052 15 C 0.026 3.974 16 H 0.123 0.877 17 C -0.178 4.178 18 C 0.064 3.936 19 N -0.341 5.341 20 C -0.368 4.368 21 H 0.097 0.903 22 C -0.247 4.247 23 N -0.592 5.592 24 Si 0.799 3.201 25 H -0.213 1.213 26 H -0.223 1.223 27 H -0.197 1.197 28 C 0.002 3.998 29 H 0.134 0.866 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.205 0.795 33 H 0.230 0.770 34 H 0.133 0.867 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.063 0.937 38 H 0.112 0.888 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.105 0.895 42 H 0.045 0.955 43 H 0.026 0.974 44 H 0.057 0.943 45 H 0.060 0.940 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -10.872 12.294 -12.688 20.745 hybrid contribution -0.107 -0.508 1.140 1.252 sum -10.978 11.786 -11.549 19.820 Atomic orbital electron populations 1.23593 0.74372 1.06276 1.03678 1.86068 1.25228 1.26109 1.86357 1.19073 0.89179 0.86593 0.88255 1.22375 1.03470 0.90875 1.13932 1.23120 0.87665 0.99116 0.86407 1.67528 1.09309 1.29097 1.23524 1.19424 0.84787 0.87699 0.88605 1.86237 1.15895 1.34188 1.86573 1.23157 0.99683 0.79672 1.03097 1.18948 0.92619 0.92791 1.22749 1.17901 0.78589 0.82999 0.83010 1.90685 1.58312 1.64598 1.32492 1.47614 1.49864 1.27062 1.06032 1.21819 1.01226 0.96207 0.85908 1.22163 0.91024 0.84487 0.99749 0.87734 1.23107 1.00431 0.97859 0.96426 1.20925 0.88847 0.92929 0.90857 1.44748 1.30091 1.58494 1.00718 1.19332 1.04410 1.28297 0.84785 0.90310 1.25495 0.98496 1.00650 1.00039 1.70173 1.24499 1.40888 1.23663 0.85186 0.78035 0.77626 0.79255 1.21335 1.22347 1.19654 1.21958 0.94313 0.98750 0.84796 0.86564 0.90145 0.89860 0.79519 0.77001 0.86682 0.91193 0.91534 0.93721 0.88807 0.92570 0.91090 0.89494 0.95502 0.97420 0.94332 0.94005 0.94040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.84 113.37 1.12 1.31 16 2 O -0.33 -8.71 10.03 -87.99 -0.88 -9.59 16 3 C 0.22 6.05 6.74 23.09 0.16 6.21 16 4 C -0.29 -4.96 9.09 22.42 0.20 -4.75 16 5 C 0.19 3.24 11.15 84.58 0.94 4.18 16 6 N -0.57 -14.00 9.20 -308.27 -2.84 -16.83 16 7 C 0.37 11.72 7.07 85.14 0.60 12.33 16 8 O -0.32 -10.45 9.93 -87.27 -0.87 -11.31 16 9 C 0.04 0.84 10.38 113.37 1.18 2.02 16 10 C -0.26 -8.97 3.95 -19.83 -0.08 -9.05 16 11 C 0.59 23.72 6.28 86.61 0.54 24.26 16 12 O -0.58 -26.60 16.49 -4.10 -0.07 -26.66 16 13 N -0.58 -23.11 2.91 -818.91 -2.38 -25.50 16 14 C 0.09 3.67 8.51 127.77 1.09 4.76 16 15 C 0.13 5.23 3.66 46.39 0.17 5.40 16 16 H 0.10 4.15 7.02 -2.39 -0.02 4.13 16 17 C -0.14 -5.52 6.48 31.78 0.21 -5.31 16 18 C 0.19 9.24 4.34 86.73 0.38 9.61 16 19 N -0.61 -30.88 1.88 -692.00 -1.30 -32.18 16 20 C -0.24 -13.06 9.77 84.03 0.82 -12.24 16 21 H 0.08 4.18 7.84 -2.91 -0.02 4.16 16 22 C -0.05 -2.92 5.48 84.86 0.46 -2.45 16 23 N -0.94 -54.78 10.36 21.65 0.22 -54.56 16 24 Si 0.97 44.74 29.56 68.60 2.03 46.77 16 25 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 26 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 27 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 28 C 0.13 5.53 6.40 86.86 0.56 6.08 16 29 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.08 0.81 7.71 -2.38 -0.02 0.79 16 31 H 0.08 0.75 7.70 -2.39 -0.02 0.73 16 32 H 0.19 1.58 6.45 -2.91 -0.02 1.57 16 33 H 0.21 1.46 8.06 -2.91 -0.02 1.43 16 34 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.07 1.38 8.10 -2.39 -0.02 1.36 16 36 H 0.07 1.39 8.10 -2.39 -0.02 1.37 16 37 H 0.04 1.77 7.90 -2.39 -0.02 1.75 16 38 H 0.09 4.41 4.73 -2.39 -0.01 4.40 16 39 H 0.06 2.10 6.54 -2.39 -0.02 2.08 16 40 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 41 H 0.09 3.11 8.14 -2.39 -0.02 3.10 16 42 H 0.03 1.43 6.27 -2.39 -0.01 1.42 16 43 H 0.01 0.42 7.60 -2.38 -0.02 0.40 16 44 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 45 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -75.98 372.01 3.26 -72.73 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: 1.00 Total: 14.79 kcal Atomic # 6 Polarization: 34.01 SS G_CDS: 8.34 Total: 42.35 kcal Atomic # 7 Polarization: -122.78 SS G_CDS: -6.29 Total: -129.07 kcal Atomic # 8 Polarization: -45.75 SS G_CDS: -1.82 Total: -47.56 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -75.98 3.26 -72.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033262789.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.197 kcal (2) G-P(sol) polarization free energy of solvation -75.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds