Wall clock time and date at job start Tue Mar 31 2020 18:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35506 * 116.99592 * 2 1 4 4 C 1.39208 * 120.90336 * 0.26561 * 3 2 1 5 5 C 1.37909 * 119.39020 * 180.29778 * 4 3 2 6 6 N 1.32076 * 121.28755 * 359.67363 * 5 4 3 7 7 C 1.32184 * 121.98198 * 0.03087 * 6 5 4 8 8 O 1.35426 * 119.77699 * 179.97438 * 7 6 5 9 9 C 1.42902 * 116.99712 * 0.02562 * 8 7 6 10 10 C 1.40293 * 120.44289 * 0.02562 * 7 6 5 11 11 C 1.47234 * 120.64871 * 179.97438 * 10 7 6 12 12 O 1.21620 * 119.99667 * 90.00209 * 11 10 7 13 13 N 1.34777 * 120.00121 * 269.99909 * 11 10 7 14 14 C 1.46498 * 120.00005 * 0.02562 * 13 11 10 15 15 C 1.46501 * 119.99956 * 180.02562 * 13 11 10 16 16 H 1.09005 * 110.63769 * 1.68521 * 15 13 11 17 17 C 1.55148 * 110.72103 * 125.02272 * 15 13 11 18 18 C 1.55133 * 101.48378 * 82.69606 * 17 15 13 19 19 N 1.47426 * 104.72214 * 37.29794 * 18 17 15 20 20 C 1.36939 * 125.64656 * 155.82094 * 19 18 17 21 21 H 1.08005 * 119.99322 * 199.22831 * 20 19 18 22 22 C 1.38809 * 120.00354 * 19.22776 * 20 19 18 23 23 N 1.31616 * 119.99843 * 28.47482 * 22 20 19 24 24 Si 1.86793 * 119.99954 * 208.47891 * 22 20 19 25 25 H 1.48505 * 109.47062 * 179.97438 * 24 22 20 26 26 H 1.48501 * 109.47375 * 299.99653 * 24 22 20 27 27 H 1.48501 * 109.47132 * 59.99984 * 24 22 20 28 28 C 1.47022 * 108.69976 * 335.54833 * 19 18 17 29 29 H 1.09003 * 109.46643 * 60.00676 * 1 2 3 30 30 H 1.08998 * 109.46936 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47757 * 300.00542 * 1 2 3 32 32 H 1.08002 * 120.30506 * 0.02562 * 4 3 2 33 33 H 1.07997 * 119.35364 * 179.70522 * 5 4 3 34 34 H 1.09004 * 109.46349 * 179.97438 * 9 8 7 35 35 H 1.08996 * 109.47193 * 299.98895 * 9 8 7 36 36 H 1.08996 * 109.47343 * 60.00405 * 9 8 7 37 37 H 1.08997 * 109.47118 * 269.99928 * 14 13 11 38 38 H 1.08999 * 109.47322 * 29.99573 * 14 13 11 39 39 H 1.09001 * 109.47040 * 149.99897 * 14 13 11 40 40 H 1.09003 * 111.00636 * 200.93085 * 17 15 13 41 41 H 1.09000 * 111.00689 * 324.75047 * 17 15 13 42 42 H 1.09003 * 110.49732 * 278.44913 * 18 17 15 43 43 H 1.09002 * 110.34263 * 156.06155 * 18 17 15 44 44 H 0.97001 * 120.00427 * 5.67258 * 23 22 20 45 45 H 1.09002 * 109.87831 * 120.70897 * 28 19 18 46 46 H 1.09001 * 109.88102 * 241.86904 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2074 0.0000 4 6 1.3044 2.3867 0.0055 5 6 1.9626 3.5985 -0.0009 6 7 3.2818 3.6626 -0.0057 7 6 4.0354 2.5766 -0.0053 8 8 5.3846 2.6943 -0.0110 9 6 5.9202 4.0191 -0.0166 10 6 3.4471 1.3031 -0.0002 11 6 4.2822 0.0905 -0.0003 12 8 4.6309 -0.4078 1.0530 13 7 4.6603 -0.4673 -1.1675 14 6 4.2407 0.1332 -2.4362 15 6 5.4908 -1.6742 -1.1675 16 1 5.6873 -2.0054 -0.1478 17 6 4.8202 -2.8020 -1.9955 18 6 5.2466 -2.4217 -3.4377 19 7 6.6244 -1.9156 -3.2999 20 6 7.5707 -1.8975 -4.2895 21 1 8.6164 -1.8062 -4.0351 22 6 7.1861 -1.9965 -5.6196 23 7 6.0036 -1.5588 -5.9969 24 14 8.3466 -2.7510 -6.8738 25 1 7.7037 -2.7402 -8.2124 26 1 9.6041 -1.9625 -6.9218 27 1 8.6545 -4.1505 -6.4842 28 6 6.8120 -1.4276 -1.9257 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8898 32 1 0.2249 2.3528 0.0103 33 1 1.3881 4.5130 -0.0014 34 1 7.0091 3.9707 -0.0204 35 1 5.5766 4.5462 -0.9067 36 1 5.5836 4.5509 0.8733 37 1 3.2901 -0.3005 -2.7466 38 1 4.1244 1.2093 -2.3079 39 1 4.9954 -0.0626 -3.1979 40 1 5.2119 -3.7794 -1.7136 41 1 3.7357 -2.7726 -1.8894 42 1 4.5948 -1.6441 -3.8360 43 1 5.2280 -3.3003 -4.0825 44 1 5.4342 -1.0932 -5.3645 45 1 7.6229 -1.9753 -1.4454 46 1 7.0388 -0.3615 -1.9387 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033262790.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:35 Heat of formation + Delta-G solvation = -24.543544 kcal Electronic energy + Delta-G solvation = -30661.428705 eV Core-core repulsion = 26553.910683 eV Total energy + Delta-G solvation = -4107.518022 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.33004 -39.49778 -39.37257 -37.49132 -37.41002 -34.41057 -32.59403 -31.68146 -30.95454 -29.07371 -28.21948 -28.12313 -27.04112 -26.17162 -24.76925 -23.86990 -22.71637 -21.15916 -20.19780 -19.26534 -18.75991 -17.89046 -17.55020 -17.28061 -16.77642 -16.40231 -16.06448 -15.86343 -15.38502 -14.92253 -14.62250 -14.39927 -14.13729 -13.88480 -13.68042 -13.46787 -13.31042 -13.11852 -12.67211 -12.45496 -12.10213 -12.03322 -11.97886 -11.84914 -11.74391 -11.63326 -11.31056 -10.94697 -10.73367 -10.58945 -10.45522 -10.22871 -10.17928 -9.98266 -9.52301 -9.48237 -9.15940 -8.77681 -8.37115 -8.23968 -6.89636 -6.09466 -3.14023 0.73119 1.04795 2.42900 2.77558 3.19623 3.26446 3.48793 3.51517 3.55773 3.73037 4.07738 4.34327 4.58297 4.61121 4.72947 4.78406 4.80727 5.06401 5.13359 5.17411 5.21400 5.27617 5.34058 5.39458 5.41573 5.51713 5.54347 5.62700 5.67995 5.78986 5.81740 5.90777 6.13656 6.17210 6.25094 6.44402 6.55113 6.70073 6.81662 6.95272 7.00069 7.03956 7.08367 7.56348 7.71864 7.84888 8.41717 8.51295 9.03363 9.82766 10.39805 11.22992 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014390 B = 0.003664 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.284424 B = 7639.996956 C = 8252.745738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.297 6.297 3 C 0.232 3.768 4 C -0.300 4.300 5 C 0.187 3.813 6 N -0.560 5.560 7 C 0.387 3.613 8 O -0.292 6.292 9 C 0.041 3.959 10 C -0.226 4.226 11 C 0.587 3.413 12 O -0.539 6.539 13 N -0.581 5.581 14 C 0.078 3.922 15 C 0.128 3.872 16 H 0.103 0.897 17 C -0.145 4.145 18 C 0.136 3.864 19 N -0.600 5.600 20 C -0.335 4.335 21 H 0.063 0.937 22 C -0.024 4.024 23 N -0.915 5.915 24 Si 1.064 2.936 25 H -0.286 1.286 26 H -0.293 1.293 27 H -0.294 1.294 28 C 0.126 3.874 29 H 0.063 0.937 30 H 0.107 0.893 31 H 0.061 0.939 32 H 0.147 0.853 33 H 0.166 0.834 34 H 0.100 0.900 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.052 0.948 38 H 0.054 0.946 39 H 0.100 0.900 40 H 0.076 0.924 41 H 0.066 0.934 42 H 0.035 0.965 43 H 0.048 0.952 44 H 0.266 0.734 45 H 0.036 0.964 46 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.918 9.839 12.029 20.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.206 6.206 3 C 0.177 3.823 4 C -0.322 4.322 5 C 0.032 3.968 6 N -0.288 5.288 7 C 0.208 3.792 8 O -0.197 6.197 9 C -0.054 4.054 10 C -0.233 4.233 11 C 0.373 3.627 12 O -0.417 6.417 13 N -0.312 5.312 14 C -0.065 4.065 15 C 0.024 3.976 16 H 0.121 0.879 17 C -0.184 4.184 18 C 0.011 3.989 19 N -0.328 5.328 20 C -0.462 4.462 21 H 0.081 0.919 22 C -0.225 4.225 23 N -0.556 5.556 24 Si 0.893 3.107 25 H -0.212 1.212 26 H -0.221 1.221 27 H -0.222 1.222 28 C 0.000 4.000 29 H 0.081 0.919 30 H 0.125 0.875 31 H 0.080 0.920 32 H 0.165 0.835 33 H 0.183 0.817 34 H 0.118 0.882 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.119 0.881 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.052 0.948 43 H 0.067 0.933 44 H 0.078 0.922 45 H 0.053 0.947 46 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -11.773 9.470 10.894 18.627 hybrid contribution -0.873 0.236 1.511 1.761 sum -12.647 9.706 12.404 20.199 Atomic orbital electron populations 1.23234 0.77009 1.04855 1.01840 1.86105 1.22381 1.25620 1.86517 1.18822 0.89794 0.85212 0.88423 1.21958 1.01714 0.92436 1.16093 1.22258 0.88474 0.97282 0.88815 1.67432 1.07957 1.30298 1.23090 1.19342 0.84655 0.87414 0.87824 1.86295 1.15155 1.31992 1.86283 1.22963 0.98912 0.80966 1.02563 1.18917 0.91399 0.93670 1.19285 1.17433 0.78987 0.82444 0.83792 1.90745 1.56420 1.63386 1.31128 1.47661 1.50451 1.27390 1.05710 1.21968 1.01310 0.96784 0.86418 1.22128 0.90842 0.84022 1.00591 0.87898 1.23182 0.99602 0.97709 0.97909 1.21789 0.87089 0.97323 0.92693 1.44580 1.10491 1.70519 1.07233 1.19716 0.87826 1.51822 0.86872 0.91933 1.25720 1.00759 1.00092 0.95968 1.70808 1.12322 1.35626 1.36825 0.83541 0.74645 0.76399 0.76083 1.21153 1.22057 1.22153 1.21683 0.93757 0.97423 0.87180 0.91878 0.87497 0.92039 0.83543 0.81655 0.88175 0.91836 0.92038 0.92962 0.92759 0.88111 0.90544 0.91535 0.94776 0.93349 0.92248 0.94658 0.95150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.84 101.05 0.99 1.18 16 2 O -0.30 -3.82 10.03 -18.21 -0.18 -4.00 16 3 C 0.23 3.10 6.74 -38.32 -0.26 2.84 16 4 C -0.30 -2.91 9.09 -39.34 -0.36 -3.27 16 5 C 0.19 1.81 11.15 -17.57 -0.20 1.62 16 6 N -0.56 -7.18 9.20 -13.06 -0.12 -7.30 16 7 C 0.39 5.94 7.08 -16.63 -0.12 5.82 16 8 O -0.29 -4.61 9.93 -17.97 -0.18 -4.79 16 9 C 0.04 0.46 10.38 101.05 1.05 1.51 16 10 C -0.23 -3.68 3.95 -104.57 -0.41 -4.09 16 11 C 0.59 11.27 6.28 -12.61 -0.08 11.19 16 12 O -0.54 -11.82 16.48 5.26 0.09 -11.74 16 13 N -0.58 -10.99 2.82 -173.18 -0.49 -11.48 16 14 C 0.08 1.41 8.35 59.85 0.50 1.91 16 15 C 0.13 2.52 3.58 -66.10 -0.24 2.28 16 16 H 0.10 2.03 6.99 -51.93 -0.36 1.67 16 17 C -0.14 -2.76 6.54 -24.47 -0.16 -2.92 16 18 C 0.14 3.14 4.50 -2.41 -0.01 3.13 16 19 N -0.60 -15.24 2.84 -169.93 -0.48 -15.72 16 20 C -0.33 -9.45 10.00 -15.06 -0.15 -9.60 16 21 H 0.06 1.78 7.97 -52.48 -0.42 1.36 16 22 C -0.02 -0.67 5.09 -17.43 -0.09 -0.76 16 23 N -0.91 -27.07 13.01 55.49 0.72 -26.35 16 24 Si 1.06 25.35 30.00 -169.99 -5.10 20.25 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 28 C 0.13 2.81 6.24 -3.07 -0.02 2.79 16 29 H 0.06 0.36 7.72 -51.93 -0.40 -0.04 16 30 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.34 7.69 -51.93 -0.40 -0.06 16 32 H 0.15 0.90 6.45 -52.49 -0.34 0.56 16 33 H 0.17 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 36 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 37 H 0.05 0.88 7.98 -51.93 -0.41 0.46 16 38 H 0.05 0.91 6.55 -51.93 -0.34 0.57 16 39 H 0.10 2.15 5.18 -51.93 -0.27 1.88 16 40 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 41 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.03 0.81 4.17 -51.93 -0.22 0.59 16 43 H 0.05 1.22 8.07 -51.93 -0.42 0.80 16 44 H 0.27 7.80 6.18 -40.82 -0.25 7.55 16 45 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.03 0.71 8.04 -51.93 -0.42 0.30 16 LS Contribution 372.44 15.07 5.61 5.61 Total: -1.00 -35.60 372.44 -6.10 -41.71 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -6.42 Total: 0.20 kcal Atomic # 6 Polarization: 13.16 SS G_CDS: 0.45 Total: 13.62 kcal Atomic # 7 Polarization: -60.48 SS G_CDS: -0.37 Total: -60.85 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -0.27 Total: -20.53 kcal Atomic # 14 Polarization: 25.35 SS G_CDS: -5.10 Total: 20.25 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.60 -6.10 -41.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033262790.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.163 kcal (2) G-P(sol) polarization free energy of solvation -35.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds