Wall clock time and date at job start Tue Mar 31 2020 18:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34769 * 120.00087 * 2 1 4 4 O 1.21618 * 119.99813 * 184.40445 * 3 2 1 5 5 C 1.47414 * 120.00275 * 4.40869 * 3 2 1 6 6 N 1.36067 * 126.44721 * 355.14350 * 5 3 2 7 7 C 1.29938 * 108.47572 * 179.97438 * 6 5 3 8 8 O 1.34044 * 109.24352 * 0.02562 * 7 6 5 9 9 C 1.34253 * 108.22903 * 359.76927 * 8 7 6 10 10 C 1.50700 * 126.52486 * 180.23392 * 9 8 7 11 11 H 1.09007 * 110.32855 * 197.40934 * 10 9 8 12 12 C 1.54478 * 110.37420 * 75.16230 * 10 9 8 13 13 C 1.54517 * 104.06089 * 217.18713 * 12 10 9 14 14 C 1.54475 * 104.06263 * 359.97438 * 13 12 10 15 15 O 1.44418 * 110.37447 * 319.77520 * 10 9 8 16 16 C 1.46504 * 119.99667 * 179.72958 * 2 1 3 17 17 H 1.08997 * 110.64229 * 179.29661 * 16 2 1 18 18 C 1.55159 * 110.72005 * 302.43786 * 16 2 1 19 19 C 1.55120 * 101.48801 * 153.73301 * 18 16 2 20 20 N 1.47426 * 104.94008 * 323.22557 * 19 18 16 21 21 C 1.36939 * 125.64504 * 204.03303 * 20 19 18 22 22 H 1.08003 * 120.00200 * 149.05688 * 21 20 19 23 23 C 1.38811 * 120.00152 * 329.06714 * 21 20 19 24 24 N 1.31618 * 119.99980 * 155.40708 * 23 21 20 25 25 Si 1.86800 * 119.99998 * 335.40729 * 23 21 20 26 26 H 1.48496 * 109.47130 * 93.93518 * 25 23 21 27 27 H 1.48506 * 109.47049 * 213.93998 * 25 23 21 28 28 H 1.48501 * 109.46894 * 333.93489 * 25 23 21 29 29 C 1.47018 * 108.70659 * 24.00215 * 20 19 18 30 30 H 1.08997 * 109.47224 * 85.79751 * 1 2 3 31 31 H 1.09000 * 109.47032 * 205.80494 * 1 2 3 32 32 H 1.09006 * 109.46649 * 325.79748 * 1 2 3 33 33 H 1.08004 * 125.37711 * 179.97438 * 7 6 5 34 34 H 1.08997 * 110.50884 * 335.82781 * 12 10 9 35 35 H 1.09004 * 110.51221 * 98.54480 * 12 10 9 36 36 H 1.09001 * 110.50860 * 118.64163 * 13 12 10 37 37 H 1.09001 * 110.51209 * 241.35374 * 13 12 10 38 38 H 1.09003 * 110.37180 * 142.80554 * 14 13 12 39 39 H 1.08999 * 110.37686 * 265.03760 * 14 13 12 40 40 H 1.09000 * 111.00170 * 271.94472 * 18 16 2 41 41 H 1.09005 * 111.00094 * 35.78931 * 18 16 2 42 42 H 1.08996 * 110.42219 * 204.29393 * 19 18 16 43 43 H 1.09001 * 110.29479 * 82.08742 * 19 18 16 44 44 H 0.97005 * 119.99937 * 179.97438 * 24 23 21 45 45 H 1.09001 * 109.87961 * 239.52568 * 29 20 19 46 46 H 1.09000 * 110.01314 * 118.43332 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3524 1.1686 -0.0809 5 6 1.4052 2.4419 0.0981 6 7 0.0536 2.5985 0.1015 7 6 -0.2139 3.8660 0.2028 8 8 0.9336 4.5559 0.2664 9 6 1.9521 3.6833 0.2072 10 6 3.4214 4.0155 0.2507 11 1 4.0106 3.1755 -0.1176 12 6 3.8477 4.3815 1.6896 13 6 4.8791 5.5162 1.4984 14 6 4.9543 5.7008 -0.0334 15 8 3.6920 5.2016 -0.5275 16 6 2.1975 -1.2688 0.0060 17 1 3.2729 -1.0917 -0.0074 18 6 1.7978 -2.1276 1.2349 19 6 2.0879 -3.5609 0.7176 20 7 1.7049 -3.5361 -0.7058 21 6 1.3437 -4.6246 -1.4541 22 1 0.6369 -4.5133 -2.2631 23 6 1.8858 -5.8712 -1.1727 24 7 1.2363 -6.9636 -1.5149 25 14 3.5370 -5.9981 -0.3086 26 1 3.3210 -6.1300 1.1547 27 1 4.2681 -7.1893 -0.8105 28 1 4.3345 -4.7759 -0.5831 29 6 1.7742 -2.1493 -1.1887 30 1 -0.3633 0.0753 -1.0249 31 1 -0.3633 -0.9252 0.4474 32 1 -0.3633 0.8500 0.5777 33 1 -1.2044 4.2958 0.2305 34 1 2.9914 4.7365 2.2630 35 1 4.3091 3.5248 2.1809 36 1 4.5325 6.4319 1.9773 37 1 5.8502 5.2204 1.8952 38 1 5.0686 6.7557 -0.2833 39 1 5.7811 5.1222 -0.4453 40 1 2.4187 -1.8874 2.0979 41 1 0.7405 -2.0049 1.4699 42 1 1.4860 -4.2901 1.2598 43 1 3.1479 -3.7929 0.8212 44 1 1.6153 -7.8347 -1.3186 45 1 0.7964 -1.8344 -1.5532 46 1 2.5111 -2.0689 -1.9878 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033318349.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:55 Heat of formation + Delta-G solvation = -3.960914 kcal Electronic energy + Delta-G solvation = -29664.364240 eV Core-core repulsion = 25557.738748 eV Total energy + Delta-G solvation = -4106.625492 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.77014 -39.91806 -39.65509 -37.60195 -35.40445 -34.61568 -32.67022 -32.24318 -31.90981 -29.76108 -28.61366 -27.96136 -26.68716 -24.89567 -23.97839 -23.59632 -22.14670 -21.62096 -20.86125 -20.47004 -19.23363 -17.84217 -17.31231 -17.00890 -16.95753 -16.60433 -16.43156 -15.75006 -15.61209 -15.23888 -15.01486 -14.40700 -14.19643 -14.05752 -13.70341 -13.47826 -13.28962 -13.01176 -12.80517 -12.53398 -12.27374 -12.20118 -12.09943 -11.91973 -11.76374 -11.64806 -11.35455 -11.16046 -11.02364 -10.90971 -10.71912 -10.55775 -10.35241 -10.22111 -10.07237 -9.91952 -9.54114 -9.28524 -8.58598 -8.39817 -6.90099 -6.00571 -3.35521 0.76251 1.79461 2.21164 2.95432 3.12660 3.36689 3.42930 3.49170 3.56572 3.74996 4.10185 4.15728 4.47476 4.50065 4.55764 4.61568 4.86280 4.86860 5.01867 5.12723 5.15765 5.20208 5.28587 5.33287 5.38208 5.41568 5.45800 5.48162 5.56466 5.58544 5.59529 5.63317 5.88482 5.92032 6.01035 6.19538 6.31480 6.34328 6.51404 6.58220 6.64352 6.76968 6.80882 7.15238 7.46875 7.83401 8.09720 8.31585 8.84345 9.66738 10.21424 11.15437 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020111 B = 0.002803 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.934885 B = 9985.743354 C =10838.552791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.579 5.579 3 C 0.597 3.403 4 O -0.541 6.541 5 C -0.051 4.051 6 N -0.457 5.457 7 C 0.176 3.824 8 O -0.186 6.186 9 C 0.044 3.956 10 C 0.148 3.852 11 H 0.135 0.865 12 C -0.146 4.146 13 C -0.153 4.153 14 C 0.044 3.956 15 O -0.366 6.366 16 C 0.124 3.876 17 H 0.107 0.893 18 C -0.141 4.141 19 C 0.121 3.879 20 N -0.603 5.603 21 C -0.247 4.247 22 H 0.085 0.915 23 C 0.034 3.966 24 N -0.899 5.899 25 Si 0.873 3.127 26 H -0.285 1.285 27 H -0.299 1.299 28 H -0.271 1.271 29 C 0.125 3.875 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.105 0.895 33 H 0.256 0.744 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.060 0.940 43 H 0.023 0.977 44 H 0.264 0.736 45 H 0.038 0.962 46 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.389 27.975 8.434 29.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.309 5.309 3 C 0.384 3.616 4 O -0.420 6.420 5 C -0.171 4.171 6 N -0.186 5.186 7 C -0.052 4.052 8 O -0.072 6.072 9 C -0.013 4.013 10 C 0.091 3.909 11 H 0.152 0.848 12 C -0.184 4.184 13 C -0.191 4.191 14 C -0.033 4.033 15 O -0.285 6.285 16 C 0.021 3.979 17 H 0.125 0.875 18 C -0.180 4.180 19 C -0.004 4.004 20 N -0.331 5.331 21 C -0.374 4.374 22 H 0.103 0.897 23 C -0.166 4.166 24 N -0.541 5.541 25 Si 0.702 3.298 26 H -0.212 1.212 27 H -0.226 1.226 28 H -0.196 1.196 29 C -0.001 4.001 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.123 0.877 33 H 0.272 0.728 34 H 0.095 0.905 35 H 0.109 0.891 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.114 0.886 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.078 0.922 43 H 0.041 0.959 44 H 0.074 0.926 45 H 0.056 0.944 46 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 1.384 27.328 8.091 28.534 hybrid contribution 1.150 0.217 0.574 1.303 sum 2.534 27.544 8.665 28.986 Atomic orbital electron populations 1.22318 0.78119 1.04291 1.02980 1.47632 1.08019 1.04972 1.70241 1.16756 0.85969 0.81859 0.77016 1.90733 1.12812 1.86398 1.52089 1.21489 0.89581 0.94599 1.11405 1.70990 1.13019 1.17324 1.17266 1.28275 0.91036 0.86044 0.99815 1.84403 1.15293 1.39033 1.68454 1.23287 0.89902 0.87157 1.00995 1.21956 0.85011 0.91587 0.92381 0.84763 1.22996 0.99849 0.99681 0.95879 1.22954 1.00001 0.99098 0.97011 1.23481 0.86511 1.00474 0.92833 1.89204 1.39092 1.41151 1.59101 1.22315 0.97359 0.81416 0.96845 0.87498 1.23170 1.01790 0.96485 0.96549 1.21878 0.97736 0.94181 0.86610 1.44639 1.80633 1.02721 1.05061 1.18523 1.19911 0.84169 1.14818 0.89718 1.25319 0.97915 0.95164 0.98234 1.69881 1.37268 0.97496 1.49465 0.86911 0.87049 0.76829 0.78993 1.21213 1.22602 1.19587 1.21663 0.98835 0.85730 0.93869 0.92568 0.90896 0.87731 0.72806 0.90452 0.89089 0.90321 0.89833 0.88559 0.91438 0.91333 0.90578 0.92217 0.95892 0.92609 0.94363 0.94688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.89 8.41 59.85 0.50 1.40 16 2 N -0.58 -9.14 2.88 -173.10 -0.50 -9.64 16 3 C 0.60 9.44 7.66 -12.53 -0.10 9.35 16 4 O -0.54 -9.45 13.97 5.26 0.07 -9.37 16 5 C -0.05 -0.68 6.69 -83.02 -0.56 -1.24 16 6 N -0.46 -5.22 7.79 -11.48 -0.09 -5.31 16 7 C 0.18 1.44 13.19 51.96 0.69 2.12 16 8 O -0.19 -1.95 10.73 6.47 0.07 -1.88 16 9 C 0.04 0.53 6.27 -35.08 -0.22 0.31 16 10 C 0.15 1.68 3.53 -27.11 -0.10 1.58 16 11 H 0.14 1.72 5.88 -51.92 -0.31 1.41 16 12 C -0.15 -1.25 6.62 -25.16 -0.17 -1.41 16 13 C -0.15 -0.99 7.09 -25.16 -0.18 -1.17 16 14 C 0.04 0.33 7.63 37.93 0.29 0.62 16 15 O -0.37 -4.20 11.33 -35.30 -0.40 -4.60 16 16 C 0.12 2.21 3.34 -66.09 -0.22 1.99 16 17 H 0.11 2.00 7.00 -51.93 -0.36 1.64 16 18 C -0.14 -2.42 6.62 -24.47 -0.16 -2.58 16 19 C 0.12 2.64 5.05 -2.41 -0.01 2.63 16 20 N -0.60 -14.81 3.00 -169.94 -0.51 -15.32 16 21 C -0.25 -7.06 10.46 -15.06 -0.16 -7.22 16 22 H 0.09 2.58 8.06 -52.48 -0.42 2.16 16 23 C 0.03 1.00 5.40 -17.43 -0.09 0.90 16 24 N -0.90 -27.65 13.97 55.49 0.78 -26.88 16 25 Si 0.87 22.60 24.99 -169.99 -4.25 18.35 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 28 H -0.27 -6.98 6.88 56.52 0.39 -6.59 16 29 C 0.13 2.62 6.88 -3.07 -0.02 2.60 16 30 H 0.06 0.78 8.04 -51.93 -0.42 0.36 16 31 H 0.07 1.01 6.29 -51.93 -0.33 0.69 16 32 H 0.10 1.30 5.05 -51.93 -0.26 1.04 16 33 H 0.26 0.65 8.06 -52.48 -0.42 0.23 16 34 H 0.08 0.64 7.86 -51.93 -0.41 0.23 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.08 1.23 6.29 -51.93 -0.33 0.90 16 42 H 0.06 1.34 8.07 -51.93 -0.42 0.92 16 43 H 0.02 0.53 5.53 -51.93 -0.29 0.24 16 44 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 45 H 0.04 0.79 6.94 -51.93 -0.36 0.43 16 46 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 362.95 15.07 5.47 5.47 Total: -1.00 -34.66 362.95 -6.29 -40.95 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -6.43 Total: -1.64 kcal Atomic # 6 Polarization: 10.38 SS G_CDS: -0.50 Total: 9.88 kcal Atomic # 7 Polarization: -56.83 SS G_CDS: -0.32 Total: -57.16 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.26 Total: -15.85 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -4.25 Total: 18.35 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.66 -6.29 -40.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033318349.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.990 kcal (2) G-P(sol) polarization free energy of solvation -34.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds