Wall clock time and date at job start Tue Mar 31 2020 18:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34769 * 120.00087 * 2 1 4 4 O 1.21618 * 119.99813 * 184.40445 * 3 2 1 5 5 C 1.47414 * 120.00275 * 4.40869 * 3 2 1 6 6 N 1.36067 * 126.44721 * 355.14350 * 5 3 2 7 7 C 1.29938 * 108.47572 * 179.97438 * 6 5 3 8 8 O 1.34044 * 109.24352 * 0.02562 * 7 6 5 9 9 C 1.34253 * 108.22903 * 359.76927 * 8 7 6 10 10 C 1.50700 * 126.52486 * 180.23392 * 9 8 7 11 11 H 1.09007 * 110.32855 * 197.40934 * 10 9 8 12 12 C 1.54478 * 110.37420 * 75.16230 * 10 9 8 13 13 C 1.54517 * 104.06089 * 217.18713 * 12 10 9 14 14 C 1.54475 * 104.06263 * 359.97438 * 13 12 10 15 15 O 1.44418 * 110.37447 * 319.77520 * 10 9 8 16 16 C 1.46504 * 119.99667 * 179.72958 * 2 1 3 17 17 H 1.08997 * 110.64229 * 179.29661 * 16 2 1 18 18 C 1.55159 * 110.72005 * 302.43786 * 16 2 1 19 19 C 1.55120 * 101.48801 * 153.73301 * 18 16 2 20 20 N 1.47426 * 104.94008 * 323.22557 * 19 18 16 21 21 C 1.36939 * 125.64504 * 204.03303 * 20 19 18 22 22 H 1.08003 * 120.00200 * 149.05688 * 21 20 19 23 23 C 1.38811 * 120.00152 * 329.06714 * 21 20 19 24 24 N 1.31618 * 119.99980 * 155.40708 * 23 21 20 25 25 Si 1.86800 * 119.99998 * 335.40729 * 23 21 20 26 26 H 1.48496 * 109.47130 * 93.93518 * 25 23 21 27 27 H 1.48506 * 109.47049 * 213.93998 * 25 23 21 28 28 H 1.48501 * 109.46894 * 333.93489 * 25 23 21 29 29 C 1.47018 * 108.70659 * 24.00215 * 20 19 18 30 30 H 1.08997 * 109.47224 * 85.79751 * 1 2 3 31 31 H 1.09000 * 109.47032 * 205.80494 * 1 2 3 32 32 H 1.09006 * 109.46649 * 325.79748 * 1 2 3 33 33 H 1.08004 * 125.37711 * 179.97438 * 7 6 5 34 34 H 1.08997 * 110.50884 * 335.82781 * 12 10 9 35 35 H 1.09004 * 110.51221 * 98.54480 * 12 10 9 36 36 H 1.09001 * 110.50860 * 118.64163 * 13 12 10 37 37 H 1.09001 * 110.51209 * 241.35374 * 13 12 10 38 38 H 1.09003 * 110.37180 * 142.80554 * 14 13 12 39 39 H 1.08999 * 110.37686 * 265.03760 * 14 13 12 40 40 H 1.09000 * 111.00170 * 271.94472 * 18 16 2 41 41 H 1.09005 * 111.00094 * 35.78931 * 18 16 2 42 42 H 1.08996 * 110.42219 * 204.29393 * 19 18 16 43 43 H 1.09001 * 110.29479 * 82.08742 * 19 18 16 44 44 H 0.97005 * 119.99937 * 179.97438 * 24 23 21 45 45 H 1.09001 * 109.87961 * 239.52568 * 29 20 19 46 46 H 1.09000 * 110.01314 * 118.43332 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3524 1.1686 -0.0809 5 6 1.4052 2.4419 0.0981 6 7 0.0536 2.5985 0.1015 7 6 -0.2139 3.8660 0.2028 8 8 0.9336 4.5559 0.2664 9 6 1.9521 3.6833 0.2072 10 6 3.4214 4.0155 0.2507 11 1 4.0106 3.1755 -0.1176 12 6 3.8477 4.3815 1.6896 13 6 4.8791 5.5162 1.4984 14 6 4.9543 5.7008 -0.0334 15 8 3.6920 5.2016 -0.5275 16 6 2.1975 -1.2688 0.0060 17 1 3.2729 -1.0917 -0.0074 18 6 1.7978 -2.1276 1.2349 19 6 2.0879 -3.5609 0.7176 20 7 1.7049 -3.5361 -0.7058 21 6 1.3437 -4.6246 -1.4541 22 1 0.6369 -4.5133 -2.2631 23 6 1.8858 -5.8712 -1.1727 24 7 1.2363 -6.9636 -1.5149 25 14 3.5370 -5.9981 -0.3086 26 1 3.3210 -6.1300 1.1547 27 1 4.2681 -7.1893 -0.8105 28 1 4.3345 -4.7759 -0.5831 29 6 1.7742 -2.1493 -1.1887 30 1 -0.3633 0.0753 -1.0249 31 1 -0.3633 -0.9252 0.4474 32 1 -0.3633 0.8500 0.5777 33 1 -1.2044 4.2958 0.2305 34 1 2.9914 4.7365 2.2630 35 1 4.3091 3.5248 2.1809 36 1 4.5325 6.4319 1.9773 37 1 5.8502 5.2204 1.8952 38 1 5.0686 6.7557 -0.2833 39 1 5.7811 5.1222 -0.4453 40 1 2.4187 -1.8874 2.0979 41 1 0.7405 -2.0049 1.4699 42 1 1.4860 -4.2901 1.2598 43 1 3.1479 -3.7929 0.8212 44 1 1.6153 -7.8347 -1.3186 45 1 0.7964 -1.8344 -1.5532 46 1 2.5111 -2.0689 -1.9878 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033318349.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:54 Heat of formation + Delta-G solvation = -29.702698 kcal Electronic energy + Delta-G solvation = -29665.480488 eV Core-core repulsion = 25557.738748 eV Total energy + Delta-G solvation = -4107.741740 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.58957 -41.18887 -40.38777 -39.16038 -36.56918 -35.81438 -34.26862 -33.39979 -32.64316 -31.54280 -29.87140 -29.10794 -27.89264 -26.51287 -24.99022 -24.63801 -22.90757 -22.61211 -22.38833 -21.67064 -20.52324 -19.01431 -18.87220 -18.25084 -17.86655 -17.52609 -17.32464 -17.18903 -16.52733 -16.47713 -16.31489 -15.80040 -15.48284 -15.09528 -14.93961 -14.79719 -14.44962 -14.30542 -14.19019 -13.93593 -13.82018 -13.58137 -13.04115 -12.85046 -12.82444 -12.82117 -12.64942 -12.54944 -12.39878 -12.32969 -12.18050 -11.87737 -11.80557 -11.59397 -11.42213 -11.17147 -10.92880 -10.75539 -10.18233 -9.68148 -8.95168 -8.26333 -5.58882 -0.15240 0.98077 1.29401 1.38048 1.39982 1.49804 1.79444 2.04358 2.38944 2.69591 2.94291 2.98037 3.34215 3.38792 3.46098 3.59831 3.70137 3.79012 3.88464 3.96227 4.08443 4.15501 4.25818 4.28860 4.32467 4.34704 4.44494 4.50347 4.68887 4.72091 4.79741 4.81164 4.85608 4.87288 4.91446 4.94915 4.95787 5.01848 5.07597 5.12262 5.33238 5.49261 5.64979 5.73958 6.07573 6.17122 6.40463 6.72825 6.89259 7.46808 8.08927 8.93840 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020111 B = 0.002803 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.934885 B = 9985.743354 C =10838.552791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.581 5.581 3 C 0.594 3.406 4 O -0.564 6.564 5 C -0.072 4.072 6 N -0.483 5.483 7 C 0.205 3.795 8 O -0.188 6.188 9 C 0.042 3.958 10 C 0.143 3.857 11 H 0.113 0.887 12 C -0.143 4.143 13 C -0.145 4.145 14 C 0.034 3.966 15 O -0.389 6.389 16 C 0.137 3.863 17 H 0.100 0.900 18 C -0.122 4.122 19 C 0.114 3.886 20 N -0.619 5.619 21 C -0.245 4.245 22 H 0.051 0.949 23 C -0.017 4.017 24 N -0.943 5.943 25 Si 0.936 3.064 26 H -0.268 1.268 27 H -0.300 1.300 28 H -0.270 1.270 29 C 0.125 3.875 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.122 0.878 33 H 0.310 0.690 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.115 0.885 39 H 0.070 0.930 40 H 0.098 0.902 41 H 0.090 0.910 42 H 0.051 0.949 43 H 0.021 0.979 44 H 0.266 0.734 45 H 0.040 0.960 46 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.506 30.901 10.578 32.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.311 5.311 3 C 0.383 3.617 4 O -0.445 6.445 5 C -0.191 4.191 6 N -0.212 5.212 7 C -0.022 4.022 8 O -0.074 6.074 9 C -0.015 4.015 10 C 0.085 3.915 11 H 0.130 0.870 12 C -0.181 4.181 13 C -0.183 4.183 14 C -0.041 4.041 15 O -0.309 6.309 16 C 0.033 3.967 17 H 0.118 0.882 18 C -0.161 4.161 19 C -0.011 4.011 20 N -0.346 5.346 21 C -0.374 4.374 22 H 0.068 0.932 23 C -0.214 4.214 24 N -0.588 5.588 25 Si 0.764 3.236 26 H -0.194 1.194 27 H -0.228 1.228 28 H -0.195 1.195 29 C 0.000 4.000 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.140 0.860 33 H 0.325 0.675 34 H 0.099 0.901 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.118 0.882 38 H 0.133 0.867 39 H 0.088 0.912 40 H 0.116 0.884 41 H 0.108 0.892 42 H 0.069 0.931 43 H 0.038 0.962 44 H 0.075 0.925 45 H 0.058 0.942 46 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 1.500 30.280 10.255 32.005 hybrid contribution 1.006 -0.551 -0.188 1.162 sum 2.506 29.729 10.067 31.487 Atomic orbital electron populations 1.22388 0.76798 1.04952 1.02992 1.47610 1.08683 1.04236 1.70551 1.17082 0.85885 0.82547 0.76226 1.90718 1.13918 1.86894 1.52929 1.21154 0.90664 0.93765 1.13476 1.70885 1.11824 1.19213 1.19239 1.29497 0.91927 0.85000 0.95799 1.84439 1.15576 1.38856 1.68539 1.23379 0.90659 0.87045 1.00452 1.21883 0.84548 0.91053 0.93967 0.86989 1.22992 1.00551 1.00474 0.94036 1.22963 1.00233 0.98887 0.96181 1.23745 0.85199 1.01481 0.93713 1.89170 1.40784 1.41084 1.59888 1.21971 0.97174 0.82063 0.95529 0.88236 1.23080 1.03334 0.92828 0.96855 1.21986 0.97175 0.96993 0.84910 1.44704 1.80546 1.02944 1.06442 1.18412 1.19006 0.85714 1.14273 0.93164 1.25878 1.00777 0.94766 0.99976 1.69981 1.38764 0.98057 1.51951 0.85910 0.82430 0.76445 0.78856 1.19372 1.22782 1.19504 1.21692 0.98574 0.84704 0.95076 0.93094 0.91048 0.86003 0.67539 0.90102 0.89090 0.88923 0.88243 0.86681 0.91215 0.88372 0.89181 0.93108 0.96163 0.92478 0.94180 0.96125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.83 8.41 127.77 1.07 2.91 16 2 N -0.58 -17.82 2.88 -819.82 -2.36 -20.19 16 3 C 0.59 18.49 7.66 86.66 0.66 19.15 16 4 O -0.56 -19.78 13.97 -4.09 -0.06 -19.84 16 5 C -0.07 -1.85 6.69 40.41 0.27 -1.58 16 6 N -0.48 -9.92 7.79 -305.16 -2.38 -12.30 16 7 C 0.21 2.63 13.19 130.52 1.72 4.35 16 8 O -0.19 -3.45 10.73 0.54 0.01 -3.45 16 9 C 0.04 0.99 6.27 25.19 0.16 1.14 16 10 C 0.14 3.16 3.53 30.35 0.11 3.27 16 11 H 0.11 2.95 5.88 -2.38 -0.01 2.93 16 12 C -0.14 -2.23 6.62 31.61 0.21 -2.02 16 13 C -0.15 -1.55 7.09 31.61 0.22 -1.33 16 14 C 0.03 0.47 7.63 72.48 0.55 1.02 16 15 O -0.39 -8.62 11.33 -148.91 -1.69 -10.30 16 16 C 0.14 4.77 3.34 46.18 0.15 4.92 16 17 H 0.10 3.67 7.00 -2.39 -0.02 3.65 16 18 C -0.12 -3.94 6.62 32.06 0.21 -3.73 16 19 C 0.11 4.83 5.05 86.93 0.44 5.27 16 20 N -0.62 -30.63 3.00 -691.58 -2.07 -32.70 16 21 C -0.25 -14.44 10.46 84.03 0.88 -13.56 16 22 H 0.05 3.23 8.06 -2.91 -0.02 3.20 16 23 C -0.02 -1.02 5.40 84.86 0.46 -0.56 16 24 N -0.94 -59.46 13.97 21.65 0.30 -59.16 16 25 Si 0.94 47.14 24.99 68.60 1.71 48.85 16 26 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 27 H -0.30 -15.09 7.11 99.48 0.71 -14.38 16 28 H -0.27 -13.42 6.88 99.48 0.68 -12.74 16 29 C 0.13 5.30 6.88 86.73 0.60 5.89 16 30 H 0.05 1.37 8.04 -2.39 -0.02 1.35 16 31 H 0.07 1.87 6.29 -2.39 -0.02 1.85 16 32 H 0.12 2.79 5.05 -2.38 -0.01 2.78 16 33 H 0.31 -0.08 8.06 -2.91 -0.02 -0.10 16 34 H 0.08 1.19 7.86 -2.39 -0.02 1.17 16 35 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 36 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 41 H 0.09 2.68 6.29 -2.38 -0.01 2.67 16 42 H 0.05 2.23 8.07 -2.39 -0.02 2.21 16 43 H 0.02 0.89 5.53 -2.39 -0.01 0.88 16 44 H 0.27 15.80 8.31 -92.70 -0.77 15.03 16 45 H 0.04 1.67 6.94 -2.39 -0.02 1.66 16 46 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -77.56 362.95 2.17 -75.39 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: 0.98 Total: 8.53 kcal Atomic # 6 Polarization: 17.44 SS G_CDS: 7.72 Total: 25.16 kcal Atomic # 7 Polarization: -117.83 SS G_CDS: -6.51 Total: -124.34 kcal Atomic # 8 Polarization: -31.85 SS G_CDS: -1.74 Total: -33.59 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 1.71 Total: 48.85 kcal Total: -77.56 2.17 -75.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033318349.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.686 kcal (2) G-P(sol) polarization free energy of solvation -77.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds