Wall clock time and date at job start Tue Mar 31 2020 18:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34777 * 119.99938 * 2 1 4 4 O 1.21613 * 120.00152 * 185.37615 * 3 2 1 5 5 C 1.47420 * 119.99836 * 5.37714 * 3 2 1 6 6 N 1.36069 * 126.45134 * 6.01588 * 5 3 2 7 7 C 1.29929 * 108.47456 * 180.02562 * 6 5 3 8 8 O 1.34049 * 109.24798 * 359.97438 * 7 6 5 9 9 C 1.34255 * 108.22488 * 359.73581 * 8 7 6 10 10 C 1.50701 * 126.52683 * 180.26272 * 9 8 7 11 11 H 1.08997 * 110.27886 * 165.82670 * 10 9 8 12 12 C 1.54948 * 110.30905 * 288.02325 * 10 9 8 13 13 C 1.55305 * 100.94511 * 155.35830 * 12 10 9 14 14 C 1.54379 * 102.24952 * 325.86457 * 13 12 10 15 15 O 1.43236 * 107.59214 * 21.35938 * 14 13 12 16 16 C 1.46498 * 119.99881 * 179.97438 * 2 1 3 17 17 H 1.09006 * 110.88773 * 183.88217 * 16 2 1 18 18 C 1.55159 * 111.00594 * 60.00640 * 16 2 1 19 19 C 1.54323 * 102.94322 * 206.42315 * 18 16 2 20 20 N 1.47024 * 107.27127 * 22.18973 * 19 18 16 21 21 C 1.36938 * 125.65134 * 181.02902 * 20 19 18 22 22 H 1.08000 * 120.00512 * 172.66870 * 21 20 19 23 23 C 1.38820 * 119.99765 * 352.66660 * 21 20 19 24 24 N 1.31613 * 119.99954 * 152.12132 * 23 21 20 25 25 Si 1.86804 * 119.99715 * 332.12846 * 23 21 20 26 26 H 1.48500 * 109.46951 * 84.92374 * 25 23 21 27 27 H 1.48500 * 109.47095 * 324.92165 * 25 23 21 28 28 H 1.48502 * 109.46603 * 204.92182 * 25 23 21 29 29 C 1.47434 * 108.70435 * 1.28449 * 20 19 18 30 30 H 1.09003 * 109.46940 * 275.34734 * 1 2 3 31 31 H 1.09001 * 109.46976 * 35.34756 * 1 2 3 32 32 H 1.08998 * 109.46807 * 155.35066 * 1 2 3 33 33 H 1.07997 * 125.37701 * 179.97438 * 7 6 5 34 34 H 1.09008 * 111.12094 * 273.27696 * 12 10 9 35 35 H 1.08995 * 111.12618 * 37.43576 * 12 10 9 36 36 H 1.08996 * 110.84940 * 207.67081 * 13 12 10 37 37 H 1.09000 * 111.02213 * 84.13115 * 13 12 10 38 38 H 1.08996 * 109.83296 * 261.84004 * 14 13 12 39 39 H 1.08999 * 109.90437 * 140.91022 * 14 13 12 40 40 H 1.08995 * 110.72367 * 88.05396 * 18 16 2 41 41 H 1.09006 * 110.71250 * 324.78363 * 18 16 2 42 42 H 1.08995 * 109.88321 * 262.77543 * 19 18 16 43 43 H 1.08994 * 110.01145 * 141.67743 * 19 18 16 44 44 H 0.97003 * 120.00210 * 5.01501 * 24 23 21 45 45 H 1.09004 * 110.36045 * 94.48226 * 29 20 19 46 46 H 1.08995 * 110.36728 * 216.80528 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3510 1.1696 -0.0987 5 6 1.4066 2.4411 0.1196 6 7 0.0738 2.5888 0.3505 7 6 -0.1990 3.8585 0.3897 8 8 0.9265 4.5587 0.1900 9 6 1.9375 3.6907 0.0262 10 6 3.3841 4.0345 -0.2191 11 1 4.0123 3.1573 -0.0648 12 6 3.5699 4.5857 -1.6553 13 6 4.8582 5.4353 -1.4807 14 6 4.7061 5.9687 -0.0400 15 8 3.7968 5.1023 0.6487 16 6 2.1975 -1.2687 0.0006 17 1 3.2717 -1.0973 0.0694 18 6 1.8484 -2.1130 -1.2536 19 6 2.1064 -3.5588 -0.7796 20 7 2.0264 -3.5578 0.6884 21 6 2.2161 -4.6452 1.4988 22 1 2.2532 -4.5199 2.5709 23 6 2.3608 -5.9088 0.9423 24 7 3.0573 -6.8300 1.5735 25 14 1.5670 -6.3013 -0.7024 26 1 2.4662 -5.8681 -1.8020 27 1 0.2714 -5.5837 -0.8106 28 1 1.3324 -7.7643 -0.8021 29 6 1.7020 -2.1935 1.1433 30 1 -0.3633 0.0958 1.0232 31 1 -0.3633 0.8382 -0.5945 32 1 -0.3633 -0.9340 -0.4286 33 1 -1.1780 4.2828 0.5568 34 1 3.7263 3.7770 -2.3692 35 1 2.7253 5.2088 -1.9492 36 1 4.8819 6.2558 -2.1978 37 1 5.7504 4.8160 -1.5729 38 1 4.3064 6.9825 -0.0613 39 1 5.6737 5.9633 0.4618 40 1 2.5043 -1.8570 -2.0856 41 1 0.8026 -1.9785 -1.5300 42 1 3.0981 -3.8815 -1.0966 43 1 1.3501 -4.2269 -1.1916 44 1 3.4082 -6.6504 2.4598 45 1 0.6263 -2.0857 1.2822 46 1 2.2296 -1.9670 2.0698 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033318350.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:00 Heat of formation + Delta-G solvation = -2.519833 kcal Electronic energy + Delta-G solvation = -29655.463412 eV Core-core repulsion = 25548.900410 eV Total energy + Delta-G solvation = -4106.563002 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.76021 -39.93040 -39.68741 -37.65887 -35.40025 -34.68383 -32.71715 -32.29967 -31.95141 -29.62916 -28.69828 -28.05041 -26.77160 -24.74658 -23.80588 -23.40145 -22.13754 -21.75139 -20.87492 -20.39173 -19.32447 -17.86341 -17.43573 -17.24251 -17.08324 -16.87427 -16.54334 -15.86557 -15.42450 -15.09992 -14.99845 -14.51158 -14.25165 -14.06043 -13.63490 -13.56616 -13.29752 -12.96506 -12.73975 -12.62614 -12.33385 -12.22821 -12.21926 -12.07015 -11.81471 -11.62205 -11.38325 -11.29664 -11.01969 -10.93180 -10.78785 -10.48139 -10.26150 -10.16538 -9.90671 -9.54180 -9.26953 -9.17788 -8.53575 -8.34493 -7.09082 -6.32440 -3.14874 0.75329 1.79887 2.21840 2.92134 3.09833 3.39901 3.44010 3.52332 3.70380 3.73880 4.01634 4.08157 4.43282 4.47172 4.61781 4.66472 4.79515 4.85933 5.01067 5.14955 5.18686 5.20380 5.25041 5.28416 5.35902 5.38315 5.42900 5.48002 5.53135 5.54874 5.60668 5.72891 5.81343 5.89296 5.92901 6.07671 6.22690 6.42316 6.47101 6.50382 6.58269 6.75080 6.78676 7.14753 7.43241 7.70143 8.07743 8.35647 9.05950 9.60980 10.26805 11.17154 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020854 B = 0.002729 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.361742 B =10257.226418 C =10823.824555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.582 5.582 3 C 0.598 3.402 4 O -0.538 6.538 5 C -0.053 4.053 6 N -0.457 5.457 7 C 0.174 3.826 8 O -0.189 6.189 9 C 0.040 3.960 10 C 0.153 3.847 11 H 0.139 0.861 12 C -0.147 4.147 13 C -0.154 4.154 14 C 0.050 3.950 15 O -0.373 6.373 16 C 0.124 3.876 17 H 0.112 0.888 18 C -0.137 4.137 19 C 0.116 3.884 20 N -0.607 5.607 21 C -0.331 4.331 22 H 0.078 0.922 23 C -0.020 4.020 24 N -0.917 5.917 25 Si 1.069 2.931 26 H -0.293 1.293 27 H -0.294 1.294 28 H -0.300 1.300 29 C 0.131 3.869 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.256 0.744 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.045 0.955 43 H 0.032 0.968 44 H 0.263 0.737 45 H 0.028 0.972 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.081 28.773 -8.055 30.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.312 5.312 3 C 0.385 3.615 4 O -0.416 6.416 5 C -0.173 4.173 6 N -0.186 5.186 7 C -0.054 4.054 8 O -0.074 6.074 9 C -0.017 4.017 10 C 0.096 3.904 11 H 0.156 0.844 12 C -0.185 4.185 13 C -0.191 4.191 14 C -0.027 4.027 15 O -0.293 6.293 16 C 0.020 3.980 17 H 0.130 0.870 18 C -0.176 4.176 19 C -0.010 4.010 20 N -0.335 5.335 21 C -0.458 4.458 22 H 0.095 0.905 23 C -0.220 4.220 24 N -0.557 5.557 25 Si 0.903 3.097 26 H -0.220 1.220 27 H -0.222 1.222 28 H -0.228 1.228 29 C 0.004 3.996 30 H 0.079 0.921 31 H 0.103 0.897 32 H 0.089 0.911 33 H 0.271 0.729 34 H 0.113 0.887 35 H 0.100 0.900 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.063 0.937 43 H 0.049 0.951 44 H 0.073 0.927 45 H 0.045 0.955 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.093 27.045 -8.881 28.759 hybrid contribution 0.090 1.780 1.024 2.056 sum -4.002 28.825 -7.857 30.143 Atomic orbital electron populations 1.21983 0.78292 1.02830 1.02829 1.47559 1.07850 1.05121 1.70641 1.16746 0.85943 0.81832 0.76951 1.90739 1.12862 1.86347 1.51658 1.21483 0.90390 0.94345 1.11089 1.71055 1.13023 1.17861 1.16662 1.28198 0.91511 0.85750 0.99916 1.84396 1.16741 1.39028 1.67243 1.23582 0.90283 0.87261 1.00591 1.22003 0.84820 0.93757 0.89863 0.84351 1.23326 0.98638 1.00514 0.96022 1.23140 0.98435 1.00437 0.97119 1.23189 0.93689 0.93937 0.91837 1.88497 1.64072 1.39129 1.37571 1.22543 0.97711 0.81003 0.96731 0.86986 1.22923 1.01592 0.95784 0.97315 1.21671 0.99470 0.93841 0.85973 1.44721 1.83358 1.04784 1.00598 1.20012 1.49765 0.85424 0.90638 0.90451 1.25754 0.98434 0.91938 1.05923 1.70916 1.31237 1.38879 1.14692 0.83739 0.76338 0.74200 0.75444 1.22032 1.22181 1.22768 1.21808 0.97417 0.85401 0.94955 0.92110 0.89747 0.91092 0.72876 0.88659 0.90047 0.89460 0.89668 0.91033 0.90677 0.90900 0.91104 0.93750 0.95082 0.92653 0.95461 0.93393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.09 7.87 59.85 0.47 1.57 16 2 N -0.58 -9.11 2.91 -172.61 -0.50 -9.61 16 3 C 0.60 9.47 7.66 -12.52 -0.10 9.38 16 4 O -0.54 -9.47 13.97 5.27 0.07 -9.40 16 5 C -0.05 -0.71 6.59 -83.02 -0.55 -1.26 16 6 N -0.46 -5.23 8.11 -11.48 -0.09 -5.32 16 7 C 0.17 1.42 13.19 51.96 0.69 2.11 16 8 O -0.19 -1.95 10.73 6.51 0.07 -1.88 16 9 C 0.04 0.49 6.37 -35.08 -0.22 0.26 16 10 C 0.15 1.74 3.73 -26.85 -0.10 1.64 16 11 H 0.14 1.81 5.79 -51.93 -0.30 1.51 16 12 C -0.15 -1.20 6.56 -24.48 -0.16 -1.36 16 13 C -0.15 -0.98 7.02 -24.79 -0.17 -1.15 16 14 C 0.05 0.39 7.79 37.88 0.30 0.68 16 15 O -0.37 -4.37 11.03 -35.23 -0.39 -4.75 16 16 C 0.12 2.23 3.45 -65.66 -0.23 2.01 16 17 H 0.11 2.18 7.04 -51.93 -0.37 1.82 16 18 C -0.14 -2.40 6.49 -24.90 -0.16 -2.56 16 19 C 0.12 2.57 4.90 -3.06 -0.02 2.56 16 20 N -0.61 -15.27 3.31 -169.93 -0.56 -15.83 16 21 C -0.33 -9.67 10.43 -15.06 -0.16 -9.83 16 22 H 0.08 2.38 8.06 -52.49 -0.42 1.95 16 23 C -0.02 -0.59 5.43 -17.43 -0.09 -0.68 16 24 N -0.92 -29.03 13.70 55.49 0.76 -28.27 16 25 Si 1.07 27.11 24.64 -169.99 -4.19 22.92 16 26 H -0.29 -6.98 6.66 56.52 0.38 -6.60 16 27 H -0.29 -7.08 6.64 56.52 0.38 -6.70 16 28 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 29 C 0.13 2.75 6.79 -2.41 -0.02 2.74 16 30 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 31 H 0.08 1.01 5.91 -51.93 -0.31 0.70 16 32 H 0.07 0.92 6.36 -51.93 -0.33 0.59 16 33 H 0.26 0.66 8.06 -52.49 -0.42 0.23 16 34 H 0.09 0.74 8.14 -51.92 -0.42 0.32 16 35 H 0.08 0.62 8.05 -51.93 -0.42 0.20 16 36 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.07 1.12 6.46 -51.93 -0.34 0.78 16 42 H 0.04 1.03 7.60 -51.93 -0.39 0.64 16 43 H 0.03 0.72 3.86 -51.93 -0.20 0.52 16 44 H 0.26 8.25 8.73 -40.82 -0.36 7.89 16 45 H 0.03 0.56 6.96 -51.93 -0.36 0.20 16 46 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 361.07 15.07 5.44 5.44 Total: -1.00 -35.59 361.07 -6.36 -41.94 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -6.44 Total: -1.33 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: -0.52 Total: 6.09 kcal Atomic # 7 Polarization: -58.63 SS G_CDS: -0.40 Total: -59.03 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -0.25 Total: -16.04 kcal Atomic # 14 Polarization: 27.11 SS G_CDS: -4.19 Total: 22.92 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.59 -6.36 -41.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033318350.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.422 kcal (2) G-P(sol) polarization free energy of solvation -35.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds