Wall clock time and date at job start Tue Mar 31 2020 19:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36009 * 117.00325 * 2 1 4 4 C 1.35851 * 120.31317 * 359.97438 * 3 2 1 5 5 N 1.35446 * 120.77662 * 180.02562 * 4 3 2 6 6 H 0.96999 * 119.29621 * 180.02562 * 5 4 3 7 7 C 1.36426 * 121.41039 * 0.02562 * 5 4 3 8 8 C 1.48072 * 119.71971 * 179.97438 * 7 5 4 9 9 O 1.21519 * 119.99955 * 179.97438 * 8 7 5 10 10 N 1.34774 * 119.99993 * 0.02562 * 8 7 5 11 11 C 1.46494 * 120.00104 * 179.97438 * 10 8 7 12 12 H 1.09007 * 109.26435 * 35.31563 * 11 10 8 13 13 C 1.50882 * 109.36937 * 154.99822 * 11 10 8 14 14 C 1.52568 * 109.36232 * 212.07788 * 13 11 10 15 15 C 1.47092 * 114.32960 * 274.99060 * 14 13 11 16 16 C 1.54861 * 110.32121 * 62.79390 * 15 14 13 17 17 N 1.44570 * 109.60423 * 288.73804 * 16 15 14 18 18 C 1.36946 * 118.64289 * 270.70557 * 17 16 15 19 19 H 1.08002 * 119.99777 * 145.32061 * 18 17 16 20 20 C 1.38808 * 119.99858 * 325.32241 * 18 17 16 21 21 N 1.31622 * 119.99945 * 330.02303 * 20 18 17 22 22 Si 1.86795 * 120.00062 * 150.03300 * 20 18 17 23 23 H 1.48504 * 109.46761 * 269.99688 * 22 20 18 24 24 H 1.48493 * 109.47507 * 149.99510 * 22 20 18 25 25 H 1.48504 * 109.47197 * 29.99354 * 22 20 18 26 26 C 1.47602 * 122.71491 * 90.98615 * 17 16 15 27 27 C 1.36186 * 120.56111 * 0.25386 * 7 5 4 28 28 C 1.41581 * 120.31488 * 180.02562 * 3 2 1 29 29 O 1.22260 * 120.65257 * 359.97438 * 28 3 2 30 30 H 1.09002 * 109.46848 * 300.00041 * 1 2 3 31 31 H 1.08997 * 109.46876 * 59.99932 * 1 2 3 32 32 H 1.09000 * 109.47360 * 180.02562 * 1 2 3 33 33 H 1.07994 * 119.60996 * 0.03001 * 4 3 2 34 34 H 0.96998 * 120.00164 * 359.97438 * 10 8 7 35 35 H 1.08997 * 109.49240 * 92.11090 * 13 11 10 36 36 H 1.09001 * 109.48957 * 332.04298 * 13 11 10 37 37 H 1.09006 * 108.51241 * 153.72834 * 14 13 11 38 38 H 1.09010 * 108.38807 * 36.15441 * 14 13 11 39 39 H 1.09004 * 109.32191 * 302.53725 * 15 14 13 40 40 H 1.08994 * 109.18887 * 182.97395 * 15 14 13 41 41 H 1.09002 * 109.44763 * 168.69466 * 16 15 14 42 42 H 1.08998 * 109.42778 * 48.76592 * 16 15 14 43 43 H 0.97000 * 120.00266 * 355.11794 * 21 20 18 44 44 H 1.09000 * 108.94607 * 78.29466 * 26 17 16 45 45 H 1.08999 * 108.95016 * 196.92768 * 26 17 16 46 46 H 1.07994 * 120.40229 * 179.71893 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.3129 2.3552 -0.0005 5 7 1.9181 3.5670 -0.0010 6 1 1.3734 4.3696 -0.0010 7 6 3.2775 3.6828 -0.0016 8 6 3.8997 5.0264 -0.0027 9 8 5.1100 5.1355 -0.0027 10 7 3.1238 6.1284 -0.0027 11 6 3.7393 7.4577 -0.0033 12 1 4.6522 7.4311 -0.5985 13 6 2.7788 8.4537 -0.6047 14 6 3.5659 9.5418 -1.3288 15 6 4.0194 10.6403 -0.4621 16 6 4.9999 10.1081 0.6120 17 7 4.2749 9.3183 1.5819 18 6 3.7438 9.9478 2.6760 19 1 2.8062 9.6093 3.0915 20 6 4.4107 11.0209 3.2510 21 7 5.7238 11.0883 3.1911 22 14 3.4445 12.3693 4.1098 23 1 3.0973 13.4301 3.1303 24 1 4.2687 12.9519 5.1990 25 1 2.1993 11.7979 4.6828 26 6 4.0886 7.8606 1.4446 27 6 4.0670 2.5731 -0.0068 28 6 3.4600 1.2936 -0.0005 29 8 4.1430 0.2796 -0.0006 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 0.2345 2.2973 -0.0005 34 1 2.1577 6.0413 -0.0023 35 1 2.1791 8.9040 0.1862 36 1 2.1244 7.9458 -1.3132 37 1 2.9369 9.9586 -2.1155 38 1 4.4396 9.0835 -1.7924 39 1 3.1572 11.0920 0.0286 40 1 4.5232 11.3917 -1.0700 41 1 5.4795 10.9486 1.1138 42 1 5.7594 9.4890 0.1346 43 1 6.2301 10.3547 2.8084 44 1 5.0076 7.3566 1.7440 45 1 3.2816 7.5431 2.1049 46 1 5.1427 2.6678 -0.0118 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034311654.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:54 Heat of formation + Delta-G solvation = -42.370294 kcal Electronic energy + Delta-G solvation = -29225.042611 eV Core-core repulsion = 25116.751563 eV Total energy + Delta-G solvation = -4108.291048 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.71238 -40.07405 -38.55872 -37.95103 -37.76436 -35.13090 -33.67700 -31.90887 -31.50797 -30.85948 -29.92137 -27.99790 -26.15902 -25.00993 -24.44601 -23.50674 -22.89561 -21.10540 -20.60839 -19.76616 -19.41702 -18.33172 -17.86416 -17.31862 -16.53337 -16.44132 -16.14072 -15.69151 -15.53849 -14.93667 -14.80236 -14.77774 -14.35240 -14.18321 -13.93335 -13.76949 -13.59123 -13.36090 -13.13313 -13.04800 -12.63899 -12.41950 -11.95788 -11.91115 -11.79448 -11.38829 -10.86334 -10.77870 -10.59492 -10.48788 -10.27904 -10.13157 -10.10931 -9.96011 -9.76301 -9.73904 -9.43333 -9.20011 -8.37635 -7.98736 -6.87275 -6.12200 -3.40913 0.40796 0.86142 2.21843 2.58874 2.65902 2.89617 3.44990 3.45420 3.45674 3.62923 4.00073 4.19721 4.31493 4.53176 4.58243 4.70660 4.72891 4.93301 5.06116 5.10758 5.19105 5.21961 5.34719 5.41303 5.45080 5.66060 5.70317 5.81884 5.86095 6.08461 6.12509 6.19719 6.30638 6.32820 6.37708 6.50775 6.60444 6.63061 6.67951 6.73504 6.84268 7.07268 7.18084 7.30892 7.76208 7.79468 8.01792 8.52666 9.09033 9.76868 10.16237 11.07217 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018918 B = 0.002496 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.698538 B =11217.261253 C =11416.923285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.288 6.288 3 C -0.033 4.033 4 C 0.028 3.972 5 N -0.564 5.564 6 H 0.419 0.581 7 C 0.127 3.873 8 C 0.554 3.446 9 O -0.496 6.496 10 N -0.713 5.713 11 C 0.130 3.870 12 H 0.086 0.914 13 C -0.114 4.114 14 C -0.099 4.099 15 C -0.143 4.143 16 C 0.141 3.859 17 N -0.586 5.586 18 C -0.361 4.361 19 H 0.050 0.950 20 C -0.017 4.017 21 N -0.897 5.897 22 Si 1.062 2.938 23 H -0.292 1.292 24 H -0.290 1.290 25 H -0.292 1.292 26 C 0.141 3.859 27 C -0.211 4.211 28 C 0.400 3.600 29 O -0.495 6.495 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.103 0.897 33 H 0.170 0.830 34 H 0.391 0.609 35 H 0.083 0.917 36 H 0.053 0.947 37 H 0.047 0.953 38 H 0.049 0.951 39 H 0.064 0.936 40 H 0.048 0.952 41 H 0.080 0.920 42 H 0.025 0.975 43 H 0.271 0.729 44 H 0.021 0.979 45 H 0.051 0.949 46 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.836 -12.824 -9.952 21.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.200 6.200 3 C -0.084 4.084 4 C -0.099 4.099 5 N -0.178 5.178 6 H 0.256 0.744 7 C 0.015 3.985 8 C 0.336 3.664 9 O -0.369 6.369 10 N -0.365 5.365 11 C 0.025 3.975 12 H 0.104 0.896 13 C -0.152 4.152 14 C -0.137 4.137 15 C -0.183 4.183 16 C 0.014 3.986 17 N -0.308 5.308 18 C -0.490 4.490 19 H 0.068 0.932 20 C -0.221 4.221 21 N -0.536 5.536 22 Si 0.892 3.108 23 H -0.219 1.219 24 H -0.216 1.216 25 H -0.219 1.219 26 C 0.014 3.986 27 C -0.238 4.238 28 C 0.290 3.710 29 O -0.379 6.379 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.121 0.879 33 H 0.187 0.813 34 H 0.225 0.775 35 H 0.101 0.899 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.067 0.933 41 H 0.098 0.902 42 H 0.043 0.957 43 H 0.082 0.918 44 H 0.039 0.961 45 H 0.069 0.931 46 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -13.327 -12.067 -9.167 20.181 hybrid contribution -1.462 -1.013 -0.746 1.929 sum -14.790 -13.080 -9.913 22.093 Atomic orbital electron populations 1.23141 0.79111 1.04573 1.00937 1.86285 1.20369 1.24285 1.89016 1.20434 0.94817 0.84687 1.08454 1.21627 0.98757 0.84119 1.05401 1.40684 1.05097 1.08452 1.63558 0.74386 1.20478 0.82754 0.95875 0.99430 1.17913 0.87310 0.82892 0.78237 1.90892 1.12815 1.85524 1.47689 1.46190 1.09282 1.06660 1.74365 1.21744 0.96711 0.78702 1.00303 0.89573 1.21269 0.97909 0.96119 0.99907 1.20262 0.98895 0.96580 0.97931 1.21371 1.01808 0.96855 0.98250 1.20959 0.92129 0.96280 0.89245 1.43569 1.64540 1.00280 1.22416 1.19868 1.03491 1.16853 1.08799 0.93204 1.25846 0.96217 1.01964 0.98074 1.70742 1.05641 1.36439 1.40731 0.83557 0.74744 0.76191 0.76282 1.21895 1.21626 1.21860 1.21583 0.98690 0.86785 0.91505 1.22511 1.02463 0.90350 1.08511 1.16808 0.86125 0.89816 0.78271 1.90862 1.65726 1.37520 1.43773 0.92679 0.92742 0.87863 0.81294 0.77489 0.89863 0.92832 0.93432 0.93251 0.91692 0.93348 0.90193 0.95679 0.91823 0.96086 0.93070 0.81234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.81 101.05 0.99 1.08 16 2 O -0.29 -3.15 10.33 -35.60 -0.37 -3.52 16 3 C -0.03 -0.35 6.71 -39.16 -0.26 -0.62 16 4 C 0.03 0.18 10.22 -16.81 -0.17 0.01 16 5 N -0.56 -3.64 5.26 -9.58 -0.05 -3.69 16 6 H 0.42 1.29 7.00 -40.82 -0.29 1.01 16 7 C 0.13 1.33 6.77 -82.53 -0.56 0.77 16 8 C 0.55 7.10 7.76 -12.23 -0.09 7.01 16 9 O -0.50 -8.55 15.94 5.35 0.09 -8.46 16 10 N -0.71 -7.91 4.97 -55.06 -0.27 -8.19 16 11 C 0.13 1.95 2.27 -68.32 -0.15 1.79 16 12 H 0.09 1.46 6.75 -51.93 -0.35 1.11 16 13 C -0.11 -1.55 5.07 -28.02 -0.14 -1.69 16 14 C -0.10 -1.45 5.16 -29.79 -0.15 -1.61 16 15 C -0.14 -2.58 5.74 -28.59 -0.16 -2.74 16 16 C 0.14 3.08 4.89 -4.09 -0.02 3.06 16 17 N -0.59 -13.45 2.01 -171.88 -0.35 -13.79 16 18 C -0.36 -9.37 9.17 -15.06 -0.14 -9.51 16 19 H 0.05 1.31 7.97 -52.49 -0.42 0.90 16 20 C -0.02 -0.46 4.68 -17.43 -0.08 -0.54 16 21 N -0.90 -25.86 12.18 55.49 0.68 -25.19 16 22 Si 1.06 24.11 30.01 -169.99 -5.10 19.01 16 23 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 25 H -0.29 -6.31 7.11 56.52 0.40 -5.90 16 26 C 0.14 2.78 5.86 -2.76 -0.02 2.76 16 27 C -0.21 -2.71 9.53 -39.03 -0.37 -3.09 16 28 C 0.40 5.72 6.78 -37.02 -0.25 5.47 16 29 O -0.50 -9.08 17.71 -11.14 -0.20 -9.27 16 30 H 0.05 0.19 7.66 -51.93 -0.40 -0.21 16 31 H 0.05 0.18 7.66 -51.93 -0.40 -0.22 16 32 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.17 0.42 6.21 -52.49 -0.33 0.09 16 34 H 0.39 2.75 6.75 -40.82 -0.28 2.48 16 35 H 0.08 1.31 7.49 -51.93 -0.39 0.92 16 36 H 0.05 0.56 7.94 -51.93 -0.41 0.15 16 37 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.05 0.72 7.35 -51.92 -0.38 0.34 16 39 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.08 2.03 5.28 -51.93 -0.27 1.75 16 42 H 0.02 0.53 8.06 -51.93 -0.42 0.11 16 43 H 0.27 7.97 7.39 -40.82 -0.30 7.67 16 44 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.05 1.00 7.86 -51.93 -0.41 0.59 16 46 H 0.17 2.32 7.57 -52.49 -0.40 1.92 16 LS Contribution 369.79 15.07 5.57 5.57 Total: -1.00 -35.66 369.79 -7.94 -43.60 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -6.34 Total: 1.77 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -1.59 Total: 2.17 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: 0.01 Total: -50.86 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.48 Total: -21.26 kcal Atomic # 14 Polarization: 24.11 SS G_CDS: -5.10 Total: 19.01 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.66 -7.94 -43.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034311654.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.226 kcal (2) G-P(sol) polarization free energy of solvation -35.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds