Wall clock time and date at job start Tue Mar 31 2020 19:13:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42905 * 1
3 3 C 1.35528 * 116.99932 * 2 1
4 4 C 1.38819 * 120.89221 * 0.02562 * 3 2 1
5 5 C 1.38713 * 119.19702 * 179.97438 * 4 3 2
6 6 O 1.35521 * 119.47430 * 180.02562 * 5 4 3
7 7 N 1.32602 * 121.05301 * 359.72756 * 5 4 3
8 8 C 1.31606 * 121.97377 * 0.57077 * 7 5 4
9 9 C 1.39549 * 120.67054 * 359.43029 * 8 7 5
10 10 C 1.47345 * 120.55218 * 180.29995 * 9 8 7
11 11 O 1.21618 * 119.99614 * 180.02562 * 10 9 8
12 12 N 1.34776 * 120.00052 * 359.97438 * 10 9 8
13 13 C 1.46497 * 119.99774 * 179.97438 * 12 10 9
14 14 H 1.09001 * 109.36554 * 34.74616 * 13 12 10
15 15 C 1.50883 * 109.36778 * 154.36557 * 13 12 10
16 16 C 1.52570 * 109.35808 * 212.08464 * 15 13 12
17 17 C 1.47091 * 114.32133 * 274.98332 * 16 15 13
18 18 C 1.54864 * 110.32338 * 62.80349 * 17 16 15
19 19 N 1.44574 * 109.60206 * 288.73324 * 18 17 16
20 20 C 1.36941 * 118.64135 * 270.74821 * 19 18 17
21 21 H 1.07999 * 120.00268 * 26.49084 * 20 19 18
22 22 C 1.38811 * 119.99768 * 206.48362 * 20 19 18
23 23 N 1.31620 * 119.99898 * 15.69491 * 22 20 19
24 24 Si 1.86796 * 120.00058 * 195.69185 * 22 20 19
25 25 H 1.48504 * 109.47288 * 0.02562 * 24 22 20
26 26 H 1.48493 * 109.47395 * 120.00117 * 24 22 20
27 27 H 1.48505 * 109.47412 * 240.00332 * 24 22 20
28 28 C 1.47605 * 122.71426 * 90.72521 * 19 18 17
29 29 H 1.09001 * 109.46661 * 180.02562 * 1 2 3
30 30 H 1.09001 * 109.46641 * 299.99689 * 1 2 3
31 31 H 1.08992 * 109.46992 * 59.99858 * 1 2 3
32 32 H 1.08001 * 120.40428 * 359.95871 * 4 3 2
33 33 H 0.96699 * 113.99753 * 90.00116 * 6 5 4
34 34 H 1.08001 * 119.66181 * 179.70585 * 8 7 5
35 35 H 0.96991 * 120.00123 * 0.02562 * 12 10 9
36 36 H 1.09001 * 109.48396 * 332.04561 * 15 13 12
37 37 H 1.08992 * 109.48850 * 92.11557 * 15 13 12
38 38 H 1.09004 * 108.51185 * 153.73008 * 16 15 13
39 39 H 1.08998 * 108.38901 * 36.14786 * 16 15 13
40 40 H 1.08999 * 109.32826 * 302.53913 * 17 16 15
41 41 H 1.09002 * 109.18761 * 182.97414 * 17 16 15
42 42 H 1.08998 * 109.44727 * 168.69269 * 18 17 16
43 43 H 1.09001 * 109.42340 * 48.76019 * 18 17 16
44 44 H 0.97005 * 119.99581 * 180.02562 * 23 22 20
45 45 H 1.09002 * 108.94543 * 197.18379 * 28 19 18
46 46 H 1.08999 * 108.94729 * 78.55305 * 28 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0443 1.2076 0.0000
4 6 1.3065 2.3834 0.0005
5 6 1.9725 3.6002 0.0011
6 8 1.2577 4.7516 0.0021
7 7 3.2974 3.6548 0.0065
8 6 4.0397 2.5680 0.0004
9 6 3.4500 1.3032 -0.0001
10 6 4.2836 0.0883 -0.0002
11 8 3.7590 -1.0090 -0.0012
12 7 5.6273 0.1929 -0.0004
13 6 6.4560 -1.0152 0.0001
14 1 5.9636 -1.7914 -0.5857
15 6 7.7973 -0.7021 -0.6159
16 6 8.3242 -1.9395 -1.3362
17 6 9.0452 -2.8840 -0.4693
18 6 8.0970 -3.4479 0.6176
19 7 7.7969 -2.4144 1.5830
20 6 8.6198 -2.2709 2.6681
21 1 9.6530 -2.5792 2.6069
22 6 8.1260 -1.7289 3.8468
23 7 6.8265 -1.6395 4.0362
24 14 9.3055 -1.1266 5.1640
25 1 10.7038 -1.3369 4.7101
26 1 9.0775 0.3202 5.4087
27 1 9.0732 -1.8837 6.4203
28 6 6.6404 -1.5073 1.4471
29 1 -0.3633 -1.0277 0.0005
30 1 -0.3633 0.5138 0.8900
31 1 -0.3633 0.5138 -0.8899
32 1 0.2269 2.3513 0.0003
33 1 1.0507 5.0852 0.8858
34 1 5.1161 2.6560 0.0003
35 1 6.0456 1.0680 0.0000
36 1 7.6880 0.1149 -1.3292
37 1 8.4978 -0.4109 0.1666
38 1 8.9965 -1.6171 -2.1314
39 1 7.4799 -2.4599 -1.7883
40 1 9.8783 -2.3700 0.0101
41 1 9.4285 -3.7053 -1.0749
42 1 8.5794 -4.2857 1.1209
43 1 7.1726 -3.7882 0.1510
44 1 6.4815 -1.2604 4.8598
45 1 6.7882 -0.6455 2.0979
46 1 5.7388 -2.0341 1.7594
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001034403021.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:13:51
Heat of formation + Delta-G solvation = -45.471326 kcal
Electronic energy + Delta-G solvation = -29825.069127 eV
Core-core repulsion = 25716.643609 eV
Total energy + Delta-G solvation = -4108.425519 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-41.16755 -39.29109 -38.88536 -37.59563 -36.89989 -34.35155 -33.51058 -31.83690
-31.28758 -30.69859 -29.51651 -27.72495 -26.02819 -24.62550 -24.11327 -23.32303
-22.73748 -20.64936 -20.00216 -19.52802 -19.19274 -17.81505 -17.55035 -16.93833
-16.60457 -16.15985 -15.54547 -15.37893 -15.23936 -15.03829 -14.63926 -14.36824
-14.09855 -13.96532 -13.46227 -13.21650 -13.09145 -12.95674 -12.63254 -12.38873
-12.21171 -12.04849 -11.80253 -11.71692 -11.28865 -11.10655 -10.97929 -10.68477
-10.40441 -10.20715 -10.14560 -10.03686 -9.92526 -9.76137 -9.48192 -9.40902
-9.31003 -9.03704 -8.48643 -8.33886 -6.61340 -5.73431 -3.18310 0.40779
1.01405 2.83395 2.90840 3.31052 3.37326 3.45314 3.47132 3.48225
3.79203 4.25856 4.48546 4.53188 4.64643 4.82637 4.89410 5.06517
5.14781 5.21709 5.26891 5.34753 5.37083 5.49486 5.56035 5.66822
5.74480 5.96872 6.01765 6.06408 6.25379 6.37097 6.51653 6.65341
6.69136 6.70291 6.82542 6.92107 6.94608 7.00918 7.13680 7.14608
7.43061 7.60430 7.79497 7.87219 7.94525 8.50213 8.63761 9.27345
9.94695 10.39949 11.32654
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.012324 B = 0.003421 C = 0.003145
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2271.434827 B = 8183.446158 C = 8901.082574
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.018 3.982
2 O -0.267 6.267
3 C 0.236 3.764
4 C -0.289 4.289
5 C 0.363 3.637
6 O -0.481 6.481
7 N -0.529 5.529
8 C 0.195 3.805
9 C -0.223 4.223
10 C 0.563 3.437
11 O -0.515 6.515
12 N -0.714 5.714
13 C 0.121 3.879
14 H 0.075 0.925
15 C -0.116 4.116
16 C -0.098 4.098
17 C -0.147 4.147
18 C 0.154 3.846
19 N -0.587 5.587
20 C -0.258 4.258
21 H 0.066 0.934
22 C 0.005 3.995
23 N -0.899 5.899
24 Si 0.898 3.102
25 H -0.278 1.278
26 H -0.290 1.290
27 H -0.291 1.291
28 C 0.175 3.825
29 H 0.108 0.892
30 H 0.059 0.941
31 H 0.059 0.941
32 H 0.150 0.850
33 H 0.405 0.595
34 H 0.172 0.828
35 H 0.392 0.608
36 H 0.051 0.949
37 H 0.081 0.919
38 H 0.044 0.956
39 H 0.049 0.951
40 H 0.061 0.939
41 H 0.046 0.954
42 H 0.046 0.954
43 H 0.033 0.967
44 H 0.252 0.748
45 H 0.077 0.923
46 H 0.032 0.968
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.431 9.119 -9.914 17.036
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.077 4.077
2 O -0.174 6.174
3 C 0.180 3.820
4 C -0.312 4.312
5 C 0.186 3.814
6 O -0.289 6.289
7 N -0.252 5.252
8 C 0.037 3.963
9 C -0.230 4.230
10 C 0.348 3.652
11 O -0.391 6.391
12 N -0.366 5.366
13 C 0.016 3.984
14 H 0.093 0.907
15 C -0.154 4.154
16 C -0.136 4.136
17 C -0.188 4.188
18 C 0.026 3.974
19 N -0.309 5.309
20 C -0.387 4.387
21 H 0.084 0.916
22 C -0.194 4.194
23 N -0.544 5.544
24 Si 0.728 3.272
25 H -0.203 1.203
26 H -0.217 1.217
27 H -0.218 1.218
28 C 0.048 3.952
29 H 0.126 0.874
30 H 0.078 0.922
31 H 0.077 0.923
32 H 0.168 0.832
33 H 0.264 0.736
34 H 0.189 0.811
35 H 0.226 0.774
36 H 0.070 0.930
37 H 0.100 0.900
38 H 0.063 0.937
39 H 0.068 0.932
40 H 0.079 0.921
41 H 0.065 0.935
42 H 0.064 0.936
43 H 0.051 0.949
44 H 0.062 0.938
45 H 0.095 0.905
46 H 0.050 0.950
Dipole moment (debyes) X Y Z Total
from point charges -10.516 8.883 -10.364 17.231
hybrid contribution -0.015 0.391 1.302 1.360
sum -10.531 9.274 -9.062 16.704
Atomic orbital electron populations
1.23276 0.78087 1.04937 1.01428 1.86437 1.21284 1.24442 1.85271
1.19156 0.90931 0.84880 0.87034 1.22072 1.02146 0.91647 1.15312
1.18968 0.86612 0.84919 0.90914 1.84692 1.71279 1.38766 1.34208
1.67196 1.06434 1.33273 1.18262 1.22671 0.99830 0.84920 0.88920
1.20672 0.91568 0.96338 1.14411 1.17548 0.82263 0.87897 0.77481
1.90840 1.72591 1.27128 1.48555 1.46036 1.05413 1.10063 1.75057
1.21784 0.89526 0.85724 1.01319 0.90720 1.21292 0.96995 0.97467
0.99672 1.20221 0.99471 0.96131 0.97805 1.21503 1.00351 0.98272
0.98643 1.20737 0.95515 0.90991 0.90144 1.43546 1.30631 1.33331
1.23355 1.19241 0.91632 1.38519 0.89352 0.91579 1.25049 0.95425
1.02034 0.96909 1.70113 1.10565 1.47970 1.25719 0.86297 0.80661
0.78334 0.81928 1.20270 1.21679 1.21797 1.21313 0.89771 0.94754
0.89323 0.87379 0.92217 0.92285 0.83221 0.73583 0.81115 0.77399
0.93038 0.90024 0.93709 0.93225 0.92069 0.93489 0.93605 0.94912
0.93806 0.90461 0.95015
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.15 9.84 101.05 0.99 1.15 16
2 O -0.27 -3.86 8.71 -39.58 -0.34 -4.21 16
3 C 0.24 3.28 6.74 -38.36 -0.26 3.02 16
4 C -0.29 -3.17 9.02 -39.19 -0.35 -3.52 16
5 C 0.36 4.17 7.73 -17.04 -0.13 4.04 16
6 O -0.48 -4.41 13.54 -18.26 -0.25 -4.66 16
7 N -0.53 -6.82 10.37 -13.04 -0.14 -6.95 16
8 C 0.20 2.44 10.71 -17.16 -0.18 2.26 16
9 C -0.22 -3.31 5.90 -104.70 -0.62 -3.93 16
10 C 0.56 10.09 7.73 -12.56 -0.10 10.00 16
11 O -0.52 -11.27 14.93 -16.04 -0.24 -11.51 16
12 N -0.71 -11.75 4.92 -55.46 -0.27 -12.02 16
13 C 0.12 2.31 2.28 -68.50 -0.16 2.15 16
14 H 0.07 1.53 6.72 -51.93 -0.35 1.18 16
15 C -0.12 -1.93 5.07 -28.01 -0.14 -2.07 16
16 C -0.10 -1.56 5.16 -29.79 -0.15 -1.72 16
17 C -0.15 -2.57 5.74 -28.58 -0.16 -2.73 16
18 C 0.15 3.24 5.65 -4.09 -0.02 3.21 16
19 N -0.59 -14.40 2.27 -172.09 -0.39 -14.80 16
20 C -0.26 -6.91 9.44 -15.06 -0.14 -7.05 16
21 H 0.07 1.75 7.88 -52.49 -0.41 1.34 16
22 C 0.00 0.13 4.87 -17.43 -0.08 0.04 16
23 N -0.90 -26.18 11.01 55.49 0.61 -25.57 16
24 Si 0.90 21.50 29.58 -169.99 -5.03 16.48 16
25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16
26 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16
27 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16
28 C 0.17 4.19 4.26 -2.94 -0.01 4.18 16
29 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16
30 H 0.06 0.42 7.71 -51.93 -0.40 0.02 16
31 H 0.06 0.41 7.71 -51.93 -0.40 0.01 16
32 H 0.15 1.20 6.45 -52.49 -0.34 0.86 16
33 H 0.41 1.64 9.06 45.56 0.41 2.06 16
34 H 0.17 1.67 6.41 -52.49 -0.34 1.34 16
35 H 0.39 5.13 6.61 -40.82 -0.27 4.86 16
36 H 0.05 0.72 7.95 -51.93 -0.41 0.30 16
37 H 0.08 1.53 7.48 -51.93 -0.39 1.14 16
38 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16
39 H 0.05 0.79 7.34 -51.93 -0.38 0.41 16
40 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16
41 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16
42 H 0.05 0.97 7.99 -51.93 -0.41 0.56 16
43 H 0.03 0.68 8.06 -51.93 -0.42 0.26 16
44 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16
45 H 0.08 2.04 6.31 -51.93 -0.33 1.71 16
46 H 0.03 0.89 8.03 -51.93 -0.42 0.48 16
LS Contribution 369.37 15.07 5.57 5.57
Total: -1.00 -35.37 369.37 -7.69 -43.06
By element:
Atomic # 1 Polarization: 11.27 SS G_CDS: -5.68 Total: 5.59 kcal
Atomic # 6 Polarization: 10.56 SS G_CDS: -1.53 Total: 9.03 kcal
Atomic # 7 Polarization: -59.15 SS G_CDS: -0.19 Total: -59.34 kcal
Atomic # 8 Polarization: -19.54 SS G_CDS: -0.83 Total: -20.38 kcal
Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.48 kcal
Total LS contribution 5.57 Total: 5.57 kcal
Total: -35.37 -7.69 -43.06 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001034403021.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -2.415 kcal
(2) G-P(sol) polarization free energy of solvation -35.367 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.782 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.689 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.056 kcal
(6) G-S(sol) free energy of system = (1) + (5) -45.471 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds