Wall clock time and date at job start Tue Mar 31 2020 19:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35529 * 116.99768 * 2 1 4 4 C 1.38817 * 120.89352 * 0.02922 * 3 2 1 5 5 C 1.38714 * 119.19552 * 179.97438 * 4 3 2 6 6 O 1.35516 * 119.47220 * 179.97438 * 5 4 3 7 7 N 1.32594 * 121.05345 * 0.02562 * 5 4 3 8 8 C 1.31606 * 121.97639 * 359.68085 * 7 5 4 9 9 C 1.39545 * 120.67239 * 0.58504 * 8 7 5 10 10 C 1.47342 * 120.55673 * 179.72772 * 9 8 7 11 11 O 1.21613 * 119.99850 * 179.72442 * 10 9 8 12 12 N 1.34770 * 120.00117 * 359.72076 * 10 9 8 13 13 C 1.46500 * 120.00256 * 179.97438 * 12 10 9 14 14 H 1.08998 * 109.46845 * 325.00694 * 13 12 10 15 15 C 1.53006 * 109.47249 * 84.99846 * 13 12 10 16 16 C 1.52997 * 109.47164 * 180.02562 * 15 13 12 17 17 C 1.53002 * 109.46978 * 299.99874 * 16 15 13 18 18 H 1.08992 * 109.47056 * 300.00064 * 17 16 15 19 19 N 1.46505 * 109.46958 * 180.02562 * 17 16 15 20 20 C 1.36939 * 119.99584 * 85.00133 * 19 17 16 21 21 H 1.07993 * 120.00301 * 0.02562 * 20 19 17 22 22 C 1.38813 * 119.99501 * 179.97438 * 20 19 17 23 23 N 1.31620 * 120.00187 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99877 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47103 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.46983 * 120.00050 * 24 22 20 27 27 H 1.48495 * 109.47328 * 240.00239 * 24 22 20 28 28 C 1.52996 * 109.46891 * 60.00410 * 17 16 15 29 29 C 1.52997 * 109.47473 * 205.00145 * 13 12 10 30 30 H 1.08994 * 109.47467 * 59.99842 * 1 2 3 31 31 H 1.09002 * 109.47291 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.46644 * 299.99308 * 1 2 3 33 33 H 1.07993 * 120.40068 * 359.97438 * 4 3 2 34 34 H 0.96704 * 114.00219 * 90.00200 * 6 5 4 35 35 H 1.07998 * 119.66586 * 180.29009 * 8 7 5 36 36 H 0.97005 * 120.00370 * 359.97438 * 12 10 9 37 37 H 1.09001 * 109.47002 * 60.00085 * 15 13 12 38 38 H 1.09000 * 109.47050 * 300.00351 * 15 13 12 39 39 H 1.09002 * 109.47045 * 180.02562 * 16 15 13 40 40 H 1.09001 * 109.47375 * 59.99966 * 16 15 13 41 41 H 0.97001 * 119.99745 * 265.00017 * 19 17 16 42 42 H 0.96998 * 120.00284 * 179.97438 * 23 22 20 43 43 H 1.09004 * 109.47368 * 179.97438 * 28 17 16 44 44 H 1.09001 * 109.47372 * 59.99964 * 28 17 16 45 45 H 1.09002 * 109.47153 * 59.99757 * 29 13 12 46 46 H 1.09001 * 109.46832 * 299.99948 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2076 0.0000 4 6 1.3064 2.3834 0.0006 5 6 1.9725 3.6002 0.0011 6 8 1.2577 4.7516 0.0012 7 7 3.2973 3.6548 0.0005 8 6 4.0396 2.5680 0.0057 9 6 3.4500 1.3032 -0.0003 10 6 4.2835 0.0883 -0.0005 11 8 3.7590 -1.0090 -0.0007 12 7 5.6272 0.1928 -0.0007 13 6 6.4560 -1.0152 -0.0004 14 1 5.9673 -1.7908 0.5892 15 6 6.6407 -1.5074 -1.4373 16 6 7.5057 -2.7693 -1.4369 17 6 8.8724 -2.4506 -0.8274 18 1 9.3612 -1.6752 -1.4170 19 7 9.7009 -3.6589 -0.8275 20 6 10.4225 -3.9940 -1.9421 21 1 10.3812 -3.3674 -2.8207 22 6 11.2080 -5.1385 -1.9421 23 7 11.2587 -5.9019 -0.8710 24 14 12.1930 -5.5954 -3.4621 25 1 11.9659 -4.5808 -4.5224 26 1 13.6376 -5.6394 -3.1210 27 1 11.7589 -6.9286 -3.9510 28 6 8.6876 -1.9586 0.6095 29 6 7.8226 -0.6960 0.6090 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 0.2270 2.3512 0.0007 34 1 1.0500 5.0855 0.8846 35 1 5.1159 2.6559 0.0097 36 1 6.0456 1.0680 -0.0010 37 1 7.1292 -0.7317 -2.0271 38 1 5.6671 -1.7348 -1.8714 39 1 7.6376 -3.1197 -2.4606 40 1 7.0168 -3.5448 -0.8473 41 1 9.7383 -4.2214 -0.0382 42 1 11.8073 -6.7019 -0.8711 43 1 9.6613 -1.7319 1.0440 44 1 8.1987 -2.7341 1.1991 45 1 7.6910 -0.3454 1.6327 46 1 8.3111 0.0796 0.0192 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034736551.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:22 Heat of formation + Delta-G solvation = -70.712559 kcal Electronic energy + Delta-G solvation = -28507.110883 eV Core-core repulsion = 24397.590823 eV Total energy + Delta-G solvation = -4109.520061 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.48175 -39.74465 -39.17180 -37.90602 -37.18997 -34.83938 -33.11578 -32.09352 -31.37185 -30.38978 -30.28780 -28.12210 -27.21786 -24.76120 -23.67728 -23.28444 -22.33623 -21.35873 -20.59463 -19.79081 -19.52333 -18.17747 -17.92589 -17.30438 -16.92210 -16.44607 -15.95250 -15.72541 -15.37155 -15.11982 -14.90095 -14.84096 -14.25345 -13.84988 -13.68661 -13.59482 -13.43909 -13.16237 -12.93072 -12.51623 -12.46730 -12.07138 -11.99285 -11.98106 -11.77506 -11.40669 -11.01556 -10.80826 -10.73816 -10.65530 -10.37957 -10.12245 -10.06671 -9.76743 -9.71970 -9.67445 -9.54340 -9.35790 -8.92730 -8.81874 -6.90725 -5.72815 -3.01017 0.09535 0.72268 2.52129 2.58986 2.98843 3.04854 3.40864 3.45628 3.51322 3.53451 3.97045 4.19543 4.31826 4.57973 4.62130 4.66103 4.72613 4.85469 4.92885 4.95045 5.07769 5.10335 5.26289 5.31493 5.55281 5.64684 5.71280 5.72502 5.76676 5.88587 5.91627 6.06601 6.27336 6.29350 6.33929 6.52233 6.60280 6.63188 6.69094 6.76755 6.88941 7.03075 7.19247 7.32410 7.43744 7.74516 8.16974 8.46193 9.57135 10.16147 10.50560 11.50061 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.024775 B = 0.002062 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.913268 B =13576.780500 C =14007.022700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.268 6.268 3 C 0.238 3.762 4 C -0.289 4.289 5 C 0.368 3.632 6 O -0.480 6.480 7 N -0.529 5.529 8 C 0.197 3.803 9 C -0.232 4.232 10 C 0.564 3.436 11 O -0.515 6.515 12 N -0.723 5.723 13 C 0.147 3.853 14 H 0.089 0.911 15 C -0.124 4.124 16 C -0.132 4.132 17 C 0.177 3.823 18 H 0.046 0.954 19 N -0.726 5.726 20 C -0.235 4.235 21 H 0.070 0.930 22 C -0.016 4.016 23 N -0.933 5.933 24 Si 0.905 3.095 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.292 1.292 28 C -0.120 4.120 29 C -0.119 4.119 30 H 0.061 0.939 31 H 0.109 0.891 32 H 0.060 0.940 33 H 0.152 0.848 34 H 0.407 0.593 35 H 0.172 0.828 36 H 0.394 0.606 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.056 0.944 41 H 0.383 0.617 42 H 0.254 0.746 43 H 0.068 0.932 44 H 0.062 0.938 45 H 0.063 0.937 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.614 21.072 6.097 31.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.176 6.176 3 C 0.182 3.818 4 C -0.312 4.312 5 C 0.191 3.809 6 O -0.288 6.288 7 N -0.251 5.251 8 C 0.038 3.962 9 C -0.238 4.238 10 C 0.350 3.650 11 O -0.390 6.390 12 N -0.374 5.374 13 C 0.044 3.956 14 H 0.107 0.893 15 C -0.163 4.163 16 C -0.173 4.173 17 C 0.067 3.933 18 H 0.064 0.936 19 N -0.366 5.366 20 C -0.366 4.366 21 H 0.088 0.912 22 C -0.212 4.212 23 N -0.582 5.582 24 Si 0.736 3.264 25 H -0.206 1.206 26 H -0.220 1.220 27 H -0.219 1.219 28 C -0.159 4.159 29 C -0.158 4.158 30 H 0.079 0.921 31 H 0.128 0.872 32 H 0.078 0.922 33 H 0.169 0.831 34 H 0.266 0.734 35 H 0.189 0.811 36 H 0.229 0.771 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.217 0.783 42 H 0.064 0.936 43 H 0.086 0.914 44 H 0.080 0.920 45 H 0.082 0.918 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -22.491 20.785 5.333 31.085 hybrid contribution -0.050 -0.565 -0.191 0.598 sum -22.540 20.220 5.142 30.714 Atomic orbital electron populations 1.23307 0.77767 1.05125 1.01599 1.86416 1.21557 1.24432 1.85196 1.19163 0.90898 0.84954 0.86828 1.22115 1.02331 0.91628 1.15103 1.18989 0.86570 0.85012 0.90301 1.84708 1.71193 1.38647 1.34246 1.67204 1.06492 1.33216 1.18232 1.22668 0.99823 0.84888 0.88823 1.20591 0.91529 0.96156 1.15558 1.17604 0.82138 0.88038 0.77226 1.90862 1.72637 1.27175 1.48354 1.46059 1.05510 1.10240 1.75613 1.21129 0.90388 0.86297 0.97789 0.89283 1.21904 1.00218 0.98893 0.95321 1.22221 0.97262 0.95595 1.02203 1.20246 0.90128 0.90100 0.92838 0.93584 1.42444 1.52661 1.25497 1.16006 1.19289 1.19019 1.05503 0.92778 0.91174 1.24742 1.00993 0.97973 0.97482 1.69671 1.44221 1.16509 1.27814 0.86140 0.79791 0.77997 0.82430 1.20595 1.21953 1.21943 1.21756 0.99189 0.95918 0.99045 1.21766 0.94248 0.99348 1.00407 0.92071 0.87228 0.92159 0.83053 0.73415 0.81095 0.77095 0.92268 0.92322 0.91832 0.92484 0.78317 0.93633 0.91352 0.91957 0.91806 0.91488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.84 101.05 0.99 1.09 16 2 O -0.27 -2.96 8.71 -39.58 -0.34 -3.30 16 3 C 0.24 2.44 6.74 -38.36 -0.26 2.19 16 4 C -0.29 -2.27 9.02 -39.19 -0.35 -2.63 16 5 C 0.37 3.12 7.73 -17.05 -0.13 2.99 16 6 O -0.48 -3.16 13.54 -18.24 -0.25 -3.40 16 7 N -0.53 -5.06 10.36 -13.04 -0.14 -5.19 16 8 C 0.20 1.68 10.71 -17.16 -0.18 1.50 16 9 C -0.23 -2.46 5.90 -104.70 -0.62 -3.07 16 10 C 0.56 7.28 7.73 -12.56 -0.10 7.18 16 11 O -0.51 -8.73 14.94 -16.03 -0.24 -8.97 16 12 N -0.72 -7.77 5.03 -54.91 -0.28 -8.05 16 13 C 0.15 1.93 2.45 -67.93 -0.17 1.76 16 14 H 0.09 1.35 7.58 -51.93 -0.39 0.96 16 15 C -0.12 -1.85 5.49 -26.73 -0.15 -1.99 16 16 C -0.13 -2.41 5.50 -26.73 -0.15 -2.55 16 17 C 0.18 3.43 2.77 -67.93 -0.19 3.25 16 18 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 19 N -0.73 -18.15 5.12 -53.43 -0.27 -18.43 16 20 C -0.23 -6.52 9.93 -15.06 -0.15 -6.67 16 21 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 22 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 23 N -0.93 -28.41 13.06 55.49 0.72 -27.69 16 24 Si 0.90 22.59 29.55 -169.99 -5.02 17.57 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 27 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 28 C -0.12 -1.90 5.39 -26.71 -0.14 -2.04 16 29 C -0.12 -1.43 5.39 -26.71 -0.14 -1.58 16 30 H 0.06 0.28 7.71 -51.93 -0.40 -0.12 16 31 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.24 7.71 -51.92 -0.40 -0.16 16 33 H 0.15 0.79 6.45 -52.49 -0.34 0.45 16 34 H 0.41 0.53 9.06 45.56 0.41 0.94 16 35 H 0.17 0.92 6.41 -52.49 -0.34 0.58 16 36 H 0.39 2.92 6.65 -40.82 -0.27 2.65 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 41 H 0.38 10.21 7.80 -40.82 -0.32 9.90 16 42 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 43 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 378.59 15.07 5.71 5.71 Total: -1.00 -36.72 378.59 -7.76 -44.48 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -5.82 Total: 8.42 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -1.83 Total: -1.15 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: 0.04 Total: -59.36 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: -0.83 Total: -15.68 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.72 -7.76 -44.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034736551.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.235 kcal (2) G-P(sol) polarization free energy of solvation -36.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds