Wall clock time and date at job start Tue Mar 31 2020 19:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35529 * 116.99768 * 2 1 4 4 C 1.38817 * 120.89352 * 0.02922 * 3 2 1 5 5 C 1.38714 * 119.19552 * 179.97438 * 4 3 2 6 6 O 1.35516 * 119.47220 * 179.97438 * 5 4 3 7 7 N 1.32594 * 121.05345 * 0.02562 * 5 4 3 8 8 C 1.31606 * 121.97639 * 359.68085 * 7 5 4 9 9 C 1.39545 * 120.67239 * 0.58504 * 8 7 5 10 10 C 1.47342 * 120.55673 * 179.72772 * 9 8 7 11 11 O 1.21613 * 119.99850 * 179.72442 * 10 9 8 12 12 N 1.34770 * 120.00117 * 359.72076 * 10 9 8 13 13 C 1.46500 * 120.00256 * 179.97438 * 12 10 9 14 14 H 1.08998 * 109.46845 * 325.00694 * 13 12 10 15 15 C 1.53006 * 109.47249 * 84.99846 * 13 12 10 16 16 C 1.52997 * 109.47164 * 180.02562 * 15 13 12 17 17 C 1.53002 * 109.46978 * 299.99874 * 16 15 13 18 18 H 1.08992 * 109.47056 * 300.00064 * 17 16 15 19 19 N 1.46505 * 109.46958 * 180.02562 * 17 16 15 20 20 C 1.36939 * 119.99584 * 85.00133 * 19 17 16 21 21 H 1.07993 * 120.00301 * 0.02562 * 20 19 17 22 22 C 1.38813 * 119.99501 * 179.97438 * 20 19 17 23 23 N 1.31620 * 120.00187 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99877 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47103 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.46983 * 120.00050 * 24 22 20 27 27 H 1.48495 * 109.47328 * 240.00239 * 24 22 20 28 28 C 1.52996 * 109.46891 * 60.00410 * 17 16 15 29 29 C 1.52997 * 109.47473 * 205.00145 * 13 12 10 30 30 H 1.08994 * 109.47467 * 59.99842 * 1 2 3 31 31 H 1.09002 * 109.47291 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.46644 * 299.99308 * 1 2 3 33 33 H 1.07993 * 120.40068 * 359.97438 * 4 3 2 34 34 H 0.96704 * 114.00219 * 90.00200 * 6 5 4 35 35 H 1.07998 * 119.66586 * 180.29009 * 8 7 5 36 36 H 0.97005 * 120.00370 * 359.97438 * 12 10 9 37 37 H 1.09001 * 109.47002 * 60.00085 * 15 13 12 38 38 H 1.09000 * 109.47050 * 300.00351 * 15 13 12 39 39 H 1.09002 * 109.47045 * 180.02562 * 16 15 13 40 40 H 1.09001 * 109.47375 * 59.99966 * 16 15 13 41 41 H 0.97001 * 119.99745 * 265.00017 * 19 17 16 42 42 H 0.96998 * 120.00284 * 179.97438 * 23 22 20 43 43 H 1.09004 * 109.47368 * 179.97438 * 28 17 16 44 44 H 1.09001 * 109.47372 * 59.99964 * 28 17 16 45 45 H 1.09002 * 109.47153 * 59.99757 * 29 13 12 46 46 H 1.09001 * 109.46832 * 299.99948 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2076 0.0000 4 6 1.3064 2.3834 0.0006 5 6 1.9725 3.6002 0.0011 6 8 1.2577 4.7516 0.0012 7 7 3.2973 3.6548 0.0005 8 6 4.0396 2.5680 0.0057 9 6 3.4500 1.3032 -0.0003 10 6 4.2835 0.0883 -0.0005 11 8 3.7590 -1.0090 -0.0007 12 7 5.6272 0.1928 -0.0007 13 6 6.4560 -1.0152 -0.0004 14 1 5.9673 -1.7908 0.5892 15 6 6.6407 -1.5074 -1.4373 16 6 7.5057 -2.7693 -1.4369 17 6 8.8724 -2.4506 -0.8274 18 1 9.3612 -1.6752 -1.4170 19 7 9.7009 -3.6589 -0.8275 20 6 10.4225 -3.9940 -1.9421 21 1 10.3812 -3.3674 -2.8207 22 6 11.2080 -5.1385 -1.9421 23 7 11.2587 -5.9019 -0.8710 24 14 12.1930 -5.5954 -3.4621 25 1 11.9659 -4.5808 -4.5224 26 1 13.6376 -5.6394 -3.1210 27 1 11.7589 -6.9286 -3.9510 28 6 8.6876 -1.9586 0.6095 29 6 7.8226 -0.6960 0.6090 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 0.2270 2.3512 0.0007 34 1 1.0500 5.0855 0.8846 35 1 5.1159 2.6559 0.0097 36 1 6.0456 1.0680 -0.0010 37 1 7.1292 -0.7317 -2.0271 38 1 5.6671 -1.7348 -1.8714 39 1 7.6376 -3.1197 -2.4606 40 1 7.0168 -3.5448 -0.8473 41 1 9.7383 -4.2214 -0.0382 42 1 11.8073 -6.7019 -0.8711 43 1 9.6613 -1.7319 1.0440 44 1 8.1987 -2.7341 1.1991 45 1 7.6910 -0.3454 1.6327 46 1 8.3111 0.0796 0.0192 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034736551.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:20 Heat of formation + Delta-G solvation = -100.699502 kcal Electronic energy + Delta-G solvation = -28508.411215 eV Core-core repulsion = 24397.590823 eV Total energy + Delta-G solvation = -4110.820392 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.16883 -40.74339 -39.80390 -39.14298 -37.81890 -36.33999 -34.67255 -32.90534 -32.54193 -31.66006 -31.54297 -29.01040 -28.34802 -25.86032 -25.11766 -24.07698 -23.60876 -22.58587 -21.63393 -20.94069 -20.34363 -19.27181 -18.78379 -18.60233 -17.90318 -17.10204 -17.04250 -16.73636 -16.33225 -16.10958 -15.90690 -15.71402 -15.45901 -15.35258 -15.06505 -14.83625 -14.61291 -14.10805 -13.96703 -13.71984 -13.39866 -13.13525 -13.05326 -12.98822 -12.84785 -12.57536 -12.50796 -12.40705 -12.27062 -12.08746 -11.99631 -11.65001 -11.45145 -11.21710 -11.15320 -10.83139 -10.55141 -10.28319 -10.16701 -9.87778 -8.97396 -7.92200 -5.19959 -0.56146 0.08289 1.47386 1.48194 1.58002 1.74450 2.01964 2.08336 2.45968 2.57679 2.68327 3.40635 3.41299 3.54883 3.64174 3.80243 3.86708 3.93482 4.08813 4.16384 4.29501 4.31615 4.33052 4.39917 4.41669 4.44567 4.54826 4.63050 4.64589 4.69225 4.71590 4.89589 5.03699 5.15771 5.17595 5.17869 5.29214 5.31351 5.49301 5.55950 5.58389 5.67255 6.06661 6.31009 6.50102 6.58640 6.75386 7.26786 7.36204 8.14533 8.36509 9.31746 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.024775 B = 0.002062 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.913268 B =13576.780500 C =14007.022700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.302 6.302 3 C 0.225 3.775 4 C -0.283 4.283 5 C 0.371 3.629 6 O -0.485 6.485 7 N -0.548 5.548 8 C 0.210 3.790 9 C -0.254 4.254 10 C 0.565 3.435 11 O -0.564 6.564 12 N -0.706 5.706 13 C 0.155 3.845 14 H 0.065 0.935 15 C -0.112 4.112 16 C -0.122 4.122 17 C 0.172 3.828 18 H 0.049 0.951 19 N -0.740 5.740 20 C -0.232 4.232 21 H 0.075 0.925 22 C -0.081 4.081 23 N -0.971 5.971 24 Si 0.970 3.030 25 H -0.266 1.266 26 H -0.293 1.293 27 H -0.297 1.297 28 C -0.113 4.113 29 C -0.105 4.105 30 H 0.075 0.925 31 H 0.114 0.886 32 H 0.080 0.920 33 H 0.176 0.824 34 H 0.429 0.571 35 H 0.201 0.799 36 H 0.415 0.585 37 H 0.078 0.922 38 H 0.045 0.955 39 H 0.039 0.961 40 H 0.037 0.963 41 H 0.371 0.629 42 H 0.249 0.751 43 H 0.068 0.932 44 H 0.052 0.948 45 H 0.091 0.909 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.346 24.309 5.965 34.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.211 6.211 3 C 0.169 3.831 4 C -0.305 4.305 5 C 0.195 3.805 6 O -0.297 6.297 7 N -0.270 5.270 8 C 0.051 3.949 9 C -0.261 4.261 10 C 0.352 3.648 11 O -0.444 6.444 12 N -0.358 5.358 13 C 0.051 3.949 14 H 0.083 0.917 15 C -0.152 4.152 16 C -0.163 4.163 17 C 0.064 3.936 18 H 0.067 0.933 19 N -0.379 5.379 20 C -0.364 4.364 21 H 0.093 0.907 22 C -0.273 4.273 23 N -0.623 5.623 24 Si 0.800 3.200 25 H -0.190 1.190 26 H -0.220 1.220 27 H -0.224 1.224 28 C -0.152 4.152 29 C -0.144 4.144 30 H 0.093 0.907 31 H 0.132 0.868 32 H 0.099 0.901 33 H 0.194 0.806 34 H 0.293 0.707 35 H 0.218 0.782 36 H 0.253 0.747 37 H 0.096 0.904 38 H 0.064 0.936 39 H 0.058 0.942 40 H 0.056 0.944 41 H 0.203 0.797 42 H 0.058 0.942 43 H 0.087 0.913 44 H 0.070 0.930 45 H 0.109 0.891 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -23.255 24.126 5.206 33.911 hybrid contribution 0.035 -1.480 -0.138 1.487 sum -23.219 22.646 5.068 32.828 Atomic orbital electron populations 1.23582 0.75658 1.06117 1.03263 1.86376 1.23990 1.25398 1.85292 1.19435 0.91186 0.85492 0.87016 1.22256 1.03417 0.90505 1.14299 1.19175 0.86540 0.85688 0.89125 1.84660 1.70804 1.37908 1.36322 1.67301 1.07161 1.33419 1.19160 1.23046 1.01034 0.83747 0.87117 1.20526 0.91699 0.95813 1.18070 1.17973 0.82599 0.88155 0.76073 1.90837 1.73578 1.29167 1.50777 1.45784 1.04805 1.10432 1.74793 1.20846 0.91260 0.86810 0.96010 0.91698 1.21770 0.98767 0.97563 0.97080 1.22024 0.97268 0.96905 1.00134 1.20508 0.89441 0.88119 0.95562 0.93272 1.42697 1.53289 1.27050 1.14845 1.19662 1.18153 1.05106 0.93524 0.90667 1.25552 1.02900 0.98461 1.00383 1.69826 1.45562 1.17026 1.29863 0.85110 0.77972 0.77516 0.79437 1.18996 1.22009 1.22442 1.21646 1.00046 0.97499 0.96019 1.21673 0.92457 0.97748 1.02498 0.90670 0.86754 0.90116 0.80629 0.70736 0.78207 0.74708 0.90386 0.93636 0.94214 0.94362 0.79738 0.94185 0.91329 0.92963 0.89070 0.89052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.84 113.37 1.12 1.20 16 2 O -0.30 -6.63 8.71 -67.97 -0.59 -7.22 16 3 C 0.22 4.40 6.74 23.06 0.16 4.56 16 4 C -0.28 -3.85 9.02 22.52 0.20 -3.65 16 5 C 0.37 5.38 7.73 84.69 0.65 6.03 16 6 O -0.48 -5.01 13.54 -88.19 -1.19 -6.21 16 7 N -0.55 -9.08 10.36 -307.96 -3.19 -12.27 16 8 C 0.21 3.06 10.71 85.04 0.91 3.97 16 9 C -0.25 -5.08 5.90 -19.91 -0.12 -5.20 16 10 C 0.56 14.19 7.73 86.64 0.67 14.86 16 11 O -0.56 -19.61 14.94 16.29 0.24 -19.37 16 12 N -0.71 -13.72 5.03 -445.89 -2.24 -15.96 16 13 C 0.16 3.85 2.45 44.99 0.11 3.96 16 14 H 0.06 1.98 7.58 -2.39 -0.02 1.96 16 15 C -0.11 -3.27 5.49 30.60 0.17 -3.11 16 16 C -0.12 -4.56 5.50 30.59 0.17 -4.39 16 17 C 0.17 6.64 2.77 44.99 0.12 6.77 16 18 H 0.05 1.89 8.08 -2.39 -0.02 1.87 16 19 N -0.74 -37.68 5.12 -322.95 -1.65 -39.34 16 20 C -0.23 -13.04 9.93 84.03 0.83 -12.20 16 21 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 22 C -0.08 -4.74 5.50 84.86 0.47 -4.27 16 23 N -0.97 -60.55 13.06 21.65 0.28 -60.27 16 24 Si 0.97 46.96 29.55 68.60 2.03 48.98 16 25 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 26 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 27 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 28 C -0.11 -3.46 5.39 30.61 0.17 -3.29 16 29 C -0.11 -2.23 5.39 30.61 0.17 -2.06 16 30 H 0.07 0.57 7.71 -2.39 -0.02 0.55 16 31 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.08 0.51 7.71 -2.38 -0.02 0.49 16 33 H 0.18 1.36 6.45 -2.91 -0.02 1.34 16 34 H 0.43 -0.17 9.06 -74.05 -0.67 -0.84 16 35 H 0.20 1.43 6.41 -2.91 -0.02 1.41 16 36 H 0.41 4.67 6.65 -92.70 -0.62 4.05 16 37 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.37 20.42 7.80 -92.71 -0.72 19.70 16 42 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 43 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 44 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 46 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -82.21 378.59 -1.50 -83.71 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: -0.97 Total: 24.77 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: 5.79 Total: 3.18 kcal Atomic # 7 Polarization: -121.04 SS G_CDS: -6.81 Total: -127.84 kcal Atomic # 8 Polarization: -31.25 SS G_CDS: -1.54 Total: -32.79 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.98 kcal Total: -82.21 -1.50 -83.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034736551.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.992 kcal (2) G-P(sol) polarization free energy of solvation -82.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds