Wall clock time and date at job start Tue Mar 31 2020 19:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35506 * 117.00244 * 2 1 4 4 C 1.39212 * 120.89856 * 359.71899 * 3 2 1 5 5 C 1.37900 * 119.38849 * 179.79287 * 4 3 2 6 6 N 1.32076 * 121.29068 * 0.49765 * 5 4 3 7 7 C 1.32189 * 121.97753 * 359.73763 * 6 5 4 8 8 O 1.35431 * 119.77359 * 180.02562 * 7 6 5 9 9 C 1.40289 * 120.44500 * 0.02562 * 7 6 5 10 10 C 1.47229 * 120.64854 * 179.97438 * 9 7 6 11 11 O 1.21626 * 119.99950 * 270.02004 * 10 9 7 12 12 N 1.34776 * 119.99762 * 90.02810 * 10 9 7 13 13 C 1.46506 * 119.99883 * 179.97438 * 12 10 9 14 14 H 1.09006 * 109.47066 * 324.99392 * 13 12 10 15 15 C 1.52991 * 109.47386 * 84.99689 * 13 12 10 16 16 C 1.53006 * 109.47308 * 180.02562 * 15 13 12 17 17 C 1.52993 * 109.46645 * 299.99975 * 16 15 13 18 18 H 1.09000 * 109.47425 * 299.99793 * 17 16 15 19 19 N 1.46506 * 109.46758 * 180.02562 * 17 16 15 20 20 C 1.36932 * 120.00220 * 84.99970 * 19 17 16 21 21 H 1.07996 * 120.00171 * 0.02562 * 20 19 17 22 22 C 1.38816 * 119.99858 * 179.97438 * 20 19 17 23 23 N 1.31618 * 119.99449 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00228 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.46943 * 89.99449 * 24 22 20 26 26 H 1.48495 * 109.46998 * 209.99629 * 24 22 20 27 27 H 1.48504 * 109.46801 * 329.99593 * 24 22 20 28 28 C 1.52997 * 109.47383 * 60.00285 * 17 16 15 29 29 C 1.52998 * 109.46925 * 205.00068 * 13 12 10 30 30 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46938 * 59.99800 * 1 2 3 32 32 H 1.09004 * 109.46926 * 299.99921 * 1 2 3 33 33 H 1.08007 * 120.30194 * 0.02562 * 4 3 2 34 34 H 1.08004 * 119.35439 * 180.20907 * 5 4 3 35 35 H 0.96690 * 114.00025 * 270.01997 * 8 7 6 36 36 H 0.97000 * 120.00332 * 359.97438 * 12 10 9 37 37 H 1.09003 * 109.47224 * 300.00136 * 15 13 12 38 38 H 1.09006 * 109.47260 * 59.99822 * 15 13 12 39 39 H 1.09004 * 109.46938 * 179.97438 * 16 15 13 40 40 H 1.09000 * 109.47041 * 60.00004 * 16 15 13 41 41 H 0.96999 * 119.99388 * 264.99545 * 19 17 16 42 42 H 0.97008 * 119.99746 * 180.02562 * 23 22 20 43 43 H 1.09003 * 109.47359 * 179.97438 * 28 17 16 44 44 H 1.09000 * 109.47242 * 59.99396 * 28 17 16 45 45 H 1.09000 * 109.47106 * 299.99537 * 29 13 12 46 46 H 1.08999 * 109.47469 * 59.99504 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2073 0.0000 4 6 1.3045 2.3866 -0.0059 5 6 1.9628 3.5984 -0.0013 6 7 3.2820 3.6624 -0.0014 7 6 4.0356 2.5764 -0.0005 8 8 5.3848 2.6941 -0.0001 9 6 3.4472 1.3029 -0.0002 10 6 4.2822 0.0903 0.0002 11 8 4.6274 -0.4106 -1.0530 12 7 4.6640 -0.4647 1.1676 13 6 5.4944 -1.6716 1.1679 14 1 5.2149 -2.3052 0.3262 15 6 6.9673 -1.2773 1.0424 16 6 7.8346 -2.5378 1.0421 17 6 7.6213 -3.3037 2.3493 18 1 7.9009 -2.6705 3.1912 19 7 8.4521 -4.5104 2.3493 20 6 9.7581 -4.4424 2.7553 21 1 10.1756 -3.4994 3.0758 22 6 10.5452 -5.5859 2.7558 23 7 11.8006 -5.5204 3.1455 24 14 9.8229 -7.2172 2.2020 25 1 10.0267 -7.3779 0.7398 26 1 10.4984 -8.3271 2.9209 27 1 8.3693 -7.2432 2.5050 28 6 6.1484 -3.6981 2.4748 29 6 5.2810 -2.4371 2.4753 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 0.5138 0.8900 33 1 0.2250 2.3528 -0.0101 34 1 1.3883 4.5130 -0.0025 35 1 5.7769 2.7281 -0.8832 36 1 4.3889 -0.0650 2.0075 37 1 7.1194 -0.7319 0.1109 38 1 7.2469 -0.6436 1.8841 39 1 8.8839 -2.2568 0.9522 40 1 7.5549 -3.1710 0.2001 41 1 8.0770 -5.3574 2.0618 42 1 12.3508 -6.3194 3.1455 43 1 5.9965 -4.2442 3.4059 44 1 5.8687 -4.3313 1.6328 45 1 5.5605 -1.8035 3.3171 46 1 4.2316 -2.7180 2.5648 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034780140.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:25 Heat of formation + Delta-G solvation = -67.920082 kcal Electronic energy + Delta-G solvation = -29004.401264 eV Core-core repulsion = 24895.002294 eV Total energy + Delta-G solvation = -4109.398970 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.50098 -39.72053 -39.24556 -37.91945 -37.16912 -34.93180 -33.14433 -32.24926 -31.13967 -30.71617 -30.43270 -28.17190 -27.67831 -25.01877 -23.32853 -23.21267 -22.42587 -21.25574 -20.58828 -19.76259 -19.56871 -18.20049 -17.97803 -17.56834 -17.28231 -16.65620 -16.16251 -15.72073 -15.45071 -15.12759 -14.90617 -14.60464 -14.30686 -14.10249 -13.75905 -13.62754 -13.40160 -13.08998 -12.89981 -12.63508 -12.26801 -12.17725 -12.12474 -12.03447 -11.94105 -11.70598 -11.14005 -10.86692 -10.83779 -10.69060 -10.42829 -10.18307 -10.14422 -9.79264 -9.75204 -9.54393 -9.53449 -9.45068 -8.98303 -8.83913 -7.21669 -5.72759 -3.07710 0.29015 0.67421 2.35740 2.41379 2.92088 3.02592 3.38790 3.40845 3.44159 3.48542 4.01772 4.28623 4.41781 4.42923 4.55202 4.57083 4.63167 4.84217 4.90803 4.96894 5.01411 5.08629 5.16400 5.33895 5.50681 5.57286 5.59431 5.66323 5.69706 5.80830 5.84127 5.97092 6.15077 6.22027 6.23737 6.41357 6.50124 6.51290 6.58429 6.68445 6.94468 7.01238 7.09640 7.37086 7.42131 8.04499 8.08914 8.46700 9.25642 9.98401 10.18607 11.45743 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022793 B = 0.002401 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.144799 B =11658.495758 C =12428.830281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.299 6.299 3 C 0.216 3.784 4 C -0.276 4.276 5 C 0.174 3.826 6 N -0.523 5.523 7 C 0.386 3.614 8 O -0.470 6.470 9 C -0.231 4.231 10 C 0.584 3.416 11 O -0.530 6.530 12 N -0.709 5.709 13 C 0.145 3.855 14 H 0.088 0.912 15 C -0.123 4.123 16 C -0.132 4.132 17 C 0.181 3.819 18 H 0.055 0.945 19 N -0.750 5.750 20 C -0.240 4.240 21 H 0.090 0.910 22 C 0.002 3.998 23 N -0.935 5.935 24 Si 0.884 3.116 25 H -0.285 1.285 26 H -0.292 1.292 27 H -0.277 1.277 28 C -0.123 4.123 29 C -0.118 4.118 30 H 0.108 0.892 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.149 0.851 34 H 0.169 0.831 35 H 0.412 0.588 36 H 0.398 0.602 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.055 0.945 41 H 0.360 0.640 42 H 0.259 0.741 43 H 0.068 0.932 44 H 0.060 0.940 45 H 0.068 0.932 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.164 17.908 -5.900 33.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.209 6.209 3 C 0.161 3.839 4 C -0.297 4.297 5 C 0.018 3.982 6 N -0.246 5.246 7 C 0.206 3.794 8 O -0.279 6.279 9 C -0.239 4.239 10 C 0.368 3.632 11 O -0.406 6.406 12 N -0.358 5.358 13 C 0.042 3.958 14 H 0.106 0.894 15 C -0.162 4.162 16 C -0.173 4.173 17 C 0.072 3.928 18 H 0.073 0.927 19 N -0.392 5.392 20 C -0.370 4.370 21 H 0.108 0.892 22 C -0.193 4.193 23 N -0.584 5.584 24 Si 0.715 3.285 25 H -0.211 1.211 26 H -0.219 1.219 27 H -0.203 1.203 28 C -0.162 4.162 29 C -0.157 4.157 30 H 0.127 0.873 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.167 0.833 34 H 0.186 0.814 35 H 0.272 0.728 36 H 0.232 0.768 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.074 0.926 41 H 0.193 0.807 42 H 0.069 0.931 43 H 0.087 0.913 44 H 0.079 0.921 45 H 0.087 0.913 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -27.193 18.110 -5.964 33.211 hybrid contribution -1.087 -1.615 -0.494 2.009 sum -28.280 16.495 -6.458 33.370 Atomic orbital electron populations 1.23264 0.76841 1.05063 1.01932 1.86112 1.22563 1.25628 1.86567 1.19087 0.90255 0.85294 0.89276 1.22181 1.02006 0.92589 1.12942 1.22441 0.88652 0.97359 0.89763 1.67336 1.07276 1.32128 1.17827 1.18822 0.84893 0.85389 0.90312 1.84682 1.13559 1.95055 1.34608 1.20377 0.91805 0.95717 1.15985 1.17435 0.78972 0.82430 0.84376 1.90831 1.56007 1.62560 1.31203 1.46078 1.52593 1.29209 1.07934 1.21161 0.90508 0.84894 0.99281 0.89421 1.21888 0.93501 0.98995 1.01848 1.22182 0.99662 0.95208 1.00223 1.20219 0.88357 0.88896 0.95313 0.92686 1.42795 1.10522 1.05470 1.80386 1.19086 0.85323 0.96605 1.35974 0.89216 1.24677 0.95695 0.97438 1.01521 1.69707 1.06352 1.28428 1.53864 0.86544 0.78369 0.85087 0.78514 1.21141 1.21854 1.20327 1.21795 0.95980 0.96216 1.02209 1.21744 0.99978 0.97507 0.96472 0.87349 0.91894 0.91851 0.83318 0.81419 0.72788 0.76788 0.92129 0.91953 0.91252 0.92623 0.80725 0.93140 0.91296 0.92102 0.91312 0.91810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.84 101.05 0.99 1.09 16 2 O -0.30 -2.70 10.03 -18.21 -0.18 -2.88 16 3 C 0.22 1.99 6.74 -38.32 -0.26 1.73 16 4 C -0.28 -1.71 9.09 -39.34 -0.36 -2.07 16 5 C 0.17 1.16 11.15 -17.57 -0.20 0.96 16 6 N -0.52 -5.18 10.37 -13.06 -0.14 -5.31 16 7 C 0.39 4.17 7.77 -16.63 -0.13 4.04 16 8 O -0.47 -4.92 13.02 -17.98 -0.23 -5.15 16 9 C -0.23 -2.61 5.66 -104.58 -0.59 -3.20 16 10 C 0.58 7.93 6.38 -12.61 -0.08 7.85 16 11 O -0.53 -9.12 16.77 5.25 0.09 -9.03 16 12 N -0.71 -8.53 5.07 -54.94 -0.28 -8.81 16 13 C 0.15 1.96 2.45 -67.93 -0.17 1.79 16 14 H 0.09 1.34 7.58 -51.93 -0.39 0.95 16 15 C -0.12 -1.85 5.49 -26.73 -0.15 -2.00 16 16 C -0.13 -2.37 5.50 -26.73 -0.15 -2.52 16 17 C 0.18 3.45 2.77 -67.93 -0.19 3.27 16 18 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 19 N -0.75 -17.81 4.93 -53.43 -0.26 -18.08 16 20 C -0.24 -6.80 10.41 -15.06 -0.16 -6.96 16 21 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 22 C 0.00 0.06 5.50 -17.43 -0.10 -0.03 16 23 N -0.94 -29.70 13.97 55.49 0.78 -28.92 16 24 Si 0.88 22.41 27.74 -169.99 -4.71 17.70 16 25 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 26 H -0.29 -7.50 7.11 56.52 0.40 -7.09 16 27 H -0.28 -6.58 6.52 56.52 0.37 -6.22 16 28 C -0.12 -1.88 5.39 -26.70 -0.14 -2.03 16 29 C -0.12 -1.45 5.40 -26.70 -0.14 -1.60 16 30 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.18 7.69 -51.93 -0.40 -0.22 16 32 H 0.06 0.15 7.72 -51.93 -0.40 -0.25 16 33 H 0.15 0.43 6.45 -52.48 -0.34 0.09 16 34 H 0.17 0.51 8.06 -52.48 -0.42 0.09 16 35 H 0.41 2.74 9.06 45.56 0.41 3.15 16 36 H 0.40 3.94 8.59 -40.82 -0.35 3.59 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.36 8.44 5.66 -40.82 -0.23 8.21 16 42 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 43 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 380.70 15.07 5.74 5.74 Total: -1.00 -37.27 380.70 -6.96 -44.23 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -5.94 Total: 10.18 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: -1.81 Total: 0.34 kcal Atomic # 7 Polarization: -61.22 SS G_CDS: 0.10 Total: -61.12 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: -0.33 Total: -17.06 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.71 Total: 17.70 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.27 -6.96 -44.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034780140.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.695 kcal (2) G-P(sol) polarization free energy of solvation -37.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds