Wall clock time and date at job start Tue Mar 31 2020 19:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35506 * 117.00244 * 2 1 4 4 C 1.39212 * 120.89856 * 359.71899 * 3 2 1 5 5 C 1.37900 * 119.38849 * 179.79287 * 4 3 2 6 6 N 1.32076 * 121.29068 * 0.49765 * 5 4 3 7 7 C 1.32189 * 121.97753 * 359.73763 * 6 5 4 8 8 O 1.35431 * 119.77359 * 180.02562 * 7 6 5 9 9 C 1.40289 * 120.44500 * 0.02562 * 7 6 5 10 10 C 1.47229 * 120.64854 * 179.97438 * 9 7 6 11 11 O 1.21626 * 119.99950 * 270.02004 * 10 9 7 12 12 N 1.34776 * 119.99762 * 90.02810 * 10 9 7 13 13 C 1.46506 * 119.99883 * 179.97438 * 12 10 9 14 14 H 1.09006 * 109.47066 * 324.99392 * 13 12 10 15 15 C 1.52991 * 109.47386 * 84.99689 * 13 12 10 16 16 C 1.53006 * 109.47308 * 180.02562 * 15 13 12 17 17 C 1.52993 * 109.46645 * 299.99975 * 16 15 13 18 18 H 1.09000 * 109.47425 * 299.99793 * 17 16 15 19 19 N 1.46506 * 109.46758 * 180.02562 * 17 16 15 20 20 C 1.36932 * 120.00220 * 84.99970 * 19 17 16 21 21 H 1.07996 * 120.00171 * 0.02562 * 20 19 17 22 22 C 1.38816 * 119.99858 * 179.97438 * 20 19 17 23 23 N 1.31618 * 119.99449 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00228 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.46943 * 89.99449 * 24 22 20 26 26 H 1.48495 * 109.46998 * 209.99629 * 24 22 20 27 27 H 1.48504 * 109.46801 * 329.99593 * 24 22 20 28 28 C 1.52997 * 109.47383 * 60.00285 * 17 16 15 29 29 C 1.52998 * 109.46925 * 205.00068 * 13 12 10 30 30 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46938 * 59.99800 * 1 2 3 32 32 H 1.09004 * 109.46926 * 299.99921 * 1 2 3 33 33 H 1.08007 * 120.30194 * 0.02562 * 4 3 2 34 34 H 1.08004 * 119.35439 * 180.20907 * 5 4 3 35 35 H 0.96690 * 114.00025 * 270.01997 * 8 7 6 36 36 H 0.97000 * 120.00332 * 359.97438 * 12 10 9 37 37 H 1.09003 * 109.47224 * 300.00136 * 15 13 12 38 38 H 1.09006 * 109.47260 * 59.99822 * 15 13 12 39 39 H 1.09004 * 109.46938 * 179.97438 * 16 15 13 40 40 H 1.09000 * 109.47041 * 60.00004 * 16 15 13 41 41 H 0.96999 * 119.99388 * 264.99545 * 19 17 16 42 42 H 0.97008 * 119.99746 * 180.02562 * 23 22 20 43 43 H 1.09003 * 109.47359 * 179.97438 * 28 17 16 44 44 H 1.09000 * 109.47242 * 59.99396 * 28 17 16 45 45 H 1.09000 * 109.47106 * 299.99537 * 29 13 12 46 46 H 1.08999 * 109.47469 * 59.99504 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2073 0.0000 4 6 1.3045 2.3866 -0.0059 5 6 1.9628 3.5984 -0.0013 6 7 3.2820 3.6624 -0.0014 7 6 4.0356 2.5764 -0.0005 8 8 5.3848 2.6941 -0.0001 9 6 3.4472 1.3029 -0.0002 10 6 4.2822 0.0903 0.0002 11 8 4.6274 -0.4106 -1.0530 12 7 4.6640 -0.4647 1.1676 13 6 5.4944 -1.6716 1.1679 14 1 5.2149 -2.3052 0.3262 15 6 6.9673 -1.2773 1.0424 16 6 7.8346 -2.5378 1.0421 17 6 7.6213 -3.3037 2.3493 18 1 7.9009 -2.6705 3.1912 19 7 8.4521 -4.5104 2.3493 20 6 9.7581 -4.4424 2.7553 21 1 10.1756 -3.4994 3.0758 22 6 10.5452 -5.5859 2.7558 23 7 11.8006 -5.5204 3.1455 24 14 9.8229 -7.2172 2.2020 25 1 10.0267 -7.3779 0.7398 26 1 10.4984 -8.3271 2.9209 27 1 8.3693 -7.2432 2.5050 28 6 6.1484 -3.6981 2.4748 29 6 5.2810 -2.4371 2.4753 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 0.5138 0.8900 33 1 0.2250 2.3528 -0.0101 34 1 1.3883 4.5130 -0.0025 35 1 5.7769 2.7281 -0.8832 36 1 4.3889 -0.0650 2.0075 37 1 7.1194 -0.7319 0.1109 38 1 7.2469 -0.6436 1.8841 39 1 8.8839 -2.2568 0.9522 40 1 7.5549 -3.1710 0.2001 41 1 8.0770 -5.3574 2.0618 42 1 12.3508 -6.3194 3.1455 43 1 5.9965 -4.2442 3.4059 44 1 5.8687 -4.3313 1.6328 45 1 5.5605 -1.8035 3.3171 46 1 4.2316 -2.7180 2.5648 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034780140.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:25 Heat of formation + Delta-G solvation = -100.174997 kcal Electronic energy + Delta-G solvation = -29005.799942 eV Core-core repulsion = 24895.002294 eV Total energy + Delta-G solvation = -4110.797648 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.18665 -40.74802 -39.87646 -39.21460 -37.83965 -36.48326 -34.69772 -33.28478 -32.56661 -31.72326 -31.58435 -29.26954 -28.42167 -25.96785 -24.94320 -23.91264 -23.70273 -22.58024 -21.69703 -21.15125 -20.27862 -19.63982 -18.86208 -18.60002 -18.16359 -17.53335 -16.93367 -16.77523 -16.36108 -16.35207 -15.87057 -15.62993 -15.59444 -15.15030 -14.97955 -14.89105 -14.58581 -14.37746 -14.17133 -13.70050 -13.61544 -13.39585 -13.12680 -12.93970 -12.91265 -12.56978 -12.49480 -12.46902 -12.32404 -12.07671 -11.96680 -11.79471 -11.52061 -11.37231 -11.23977 -10.89232 -10.56539 -10.18042 -10.10475 -10.05246 -9.29698 -8.01133 -5.34064 -0.33049 0.06511 1.37835 1.41104 1.41684 1.48788 1.85852 2.05275 2.39639 2.49540 2.74539 3.29886 3.41939 3.58813 3.69143 3.75435 3.78186 3.84484 3.91661 4.23386 4.29714 4.30031 4.32184 4.33890 4.37068 4.48907 4.50738 4.56474 4.60972 4.73934 4.82262 4.84208 4.91295 5.07546 5.12052 5.21215 5.22751 5.24898 5.42710 5.48102 5.58592 5.79370 6.03758 6.23536 6.38757 6.42796 6.79089 7.09552 7.10366 7.86510 8.05808 9.20613 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022793 B = 0.002401 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.144799 B =11658.495758 C =12428.830281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.325 6.325 3 C 0.210 3.790 4 C -0.259 4.259 5 C 0.176 3.824 6 N -0.545 5.545 7 C 0.375 3.625 8 O -0.487 6.487 9 C -0.257 4.257 10 C 0.586 3.414 11 O -0.575 6.575 12 N -0.698 5.698 13 C 0.152 3.848 14 H 0.071 0.929 15 C -0.112 4.112 16 C -0.123 4.123 17 C 0.175 3.825 18 H 0.045 0.955 19 N -0.753 5.753 20 C -0.226 4.226 21 H 0.055 0.945 22 C -0.068 4.068 23 N -0.986 5.986 24 Si 0.956 3.044 25 H -0.283 1.283 26 H -0.296 1.296 27 H -0.248 1.248 28 C -0.115 4.115 29 C -0.107 4.107 30 H 0.117 0.883 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.188 0.812 34 H 0.208 0.792 35 H 0.422 0.578 36 H 0.411 0.589 37 H 0.049 0.951 38 H 0.069 0.931 39 H 0.038 0.962 40 H 0.051 0.949 41 H 0.365 0.635 42 H 0.257 0.743 43 H 0.075 0.925 44 H 0.065 0.935 45 H 0.082 0.918 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.677 18.475 -5.738 37.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.235 6.235 3 C 0.155 3.845 4 C -0.280 4.280 5 C 0.021 3.979 6 N -0.268 5.268 7 C 0.195 3.805 8 O -0.298 6.298 9 C -0.265 4.265 10 C 0.372 3.628 11 O -0.455 6.455 12 N -0.347 5.347 13 C 0.048 3.952 14 H 0.089 0.911 15 C -0.152 4.152 16 C -0.164 4.164 17 C 0.067 3.933 18 H 0.063 0.937 19 N -0.395 5.395 20 C -0.357 4.357 21 H 0.073 0.927 22 C -0.259 4.259 23 N -0.637 5.637 24 Si 0.783 3.217 25 H -0.209 1.209 26 H -0.223 1.223 27 H -0.172 1.172 28 C -0.154 4.154 29 C -0.145 4.145 30 H 0.135 0.865 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.205 0.795 34 H 0.225 0.775 35 H 0.284 0.716 36 H 0.247 0.753 37 H 0.068 0.932 38 H 0.087 0.913 39 H 0.056 0.944 40 H 0.069 0.931 41 H 0.198 0.802 42 H 0.065 0.935 43 H 0.094 0.906 44 H 0.083 0.917 45 H 0.101 0.899 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -31.786 18.722 -5.786 37.341 hybrid contribution 0.249 -1.644 -0.555 1.753 sum -31.537 17.078 -6.341 36.420 Atomic orbital electron populations 1.23607 0.74439 1.06360 1.03708 1.86082 1.25126 1.25896 1.86436 1.19262 0.89681 0.86487 0.89110 1.22554 1.03691 0.91037 1.10688 1.23187 0.87763 0.99190 0.87764 1.67402 1.08879 1.31711 1.18812 1.18893 0.84906 0.85648 0.91021 1.84628 1.14165 1.95134 1.35826 1.20256 0.92789 0.94562 1.18849 1.17821 0.78443 0.82738 0.83814 1.90797 1.57810 1.64115 1.32739 1.45934 1.51798 1.28579 1.08387 1.20947 0.89252 0.85403 0.99605 0.91051 1.21751 0.94471 0.97332 1.01596 1.22004 0.98449 0.96419 0.99538 1.20461 0.90432 0.87275 0.95096 0.93664 1.42822 1.09288 1.07273 1.80152 1.19030 0.87242 0.95143 1.34291 0.92714 1.25523 0.96113 1.01678 1.02620 1.69894 1.08172 1.29434 1.56200 0.85395 0.79051 0.79557 0.77707 1.20926 1.22279 1.17217 1.21693 0.93097 0.97817 1.02758 1.21664 1.00909 0.96020 0.95895 0.86515 0.90358 0.89709 0.79455 0.77530 0.71595 0.75261 0.93197 0.91271 0.94355 0.93059 0.80196 0.93452 0.90585 0.91673 0.89903 0.89040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 9.84 113.37 1.12 1.18 16 2 O -0.32 -5.19 10.03 -88.08 -0.88 -6.07 16 3 C 0.21 3.44 6.74 23.08 0.16 3.60 16 4 C -0.26 -2.28 9.09 22.42 0.20 -2.07 16 5 C 0.18 1.77 11.15 84.58 0.94 2.71 16 6 N -0.55 -9.94 10.37 -308.27 -3.20 -13.13 16 7 C 0.37 7.95 7.77 85.14 0.66 8.62 16 8 O -0.49 -10.44 13.02 -87.26 -1.14 -11.58 16 9 C -0.26 -5.63 5.66 -19.84 -0.11 -5.74 16 10 C 0.59 15.89 6.38 86.61 0.55 16.45 16 11 O -0.58 -20.30 16.77 -4.11 -0.07 -20.37 16 12 N -0.70 -16.10 5.07 -445.99 -2.26 -18.36 16 13 C 0.15 3.95 2.45 44.99 0.11 4.06 16 14 H 0.07 2.15 7.58 -2.38 -0.02 2.13 16 15 C -0.11 -3.40 5.49 30.59 0.17 -3.24 16 16 C -0.12 -4.54 5.50 30.59 0.17 -4.37 16 17 C 0.18 6.62 2.77 44.99 0.12 6.75 16 18 H 0.05 1.81 8.08 -2.39 -0.02 1.79 16 19 N -0.75 -35.63 4.93 -322.95 -1.59 -37.23 16 20 C -0.23 -13.14 10.41 84.04 0.87 -12.26 16 21 H 0.05 3.50 8.06 -2.91 -0.02 3.47 16 22 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 23 N -0.99 -64.60 13.97 21.65 0.30 -64.30 16 24 Si 0.96 46.48 27.74 68.60 1.90 48.38 16 25 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 26 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 27 H -0.25 -10.74 6.52 99.48 0.65 -10.09 16 28 C -0.11 -3.26 5.39 30.61 0.17 -3.10 16 29 C -0.11 -2.33 5.40 30.61 0.17 -2.16 16 30 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.08 0.15 7.69 -2.39 -0.02 0.13 16 32 H 0.08 0.06 7.72 -2.38 -0.02 0.04 16 33 H 0.19 0.09 6.45 -2.91 -0.02 0.07 16 34 H 0.21 0.30 8.06 -2.91 -0.02 0.28 16 35 H 0.42 6.10 9.06 -74.06 -0.67 5.43 16 36 H 0.41 7.43 8.59 -92.71 -0.80 6.63 16 37 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 39 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 40 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.36 16.53 5.66 -92.71 -0.52 16.00 16 42 H 0.26 16.02 8.31 -92.70 -0.77 15.25 16 43 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.08 1.63 8.14 -2.39 -0.02 1.62 16 46 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -84.80 380.70 -2.18 -86.98 By element: Atomic # 1 Polarization: 29.92 SS G_CDS: -1.01 Total: 28.91 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: 5.76 Total: 6.77 kcal Atomic # 7 Polarization: -126.27 SS G_CDS: -6.75 Total: -133.02 kcal Atomic # 8 Polarization: -35.93 SS G_CDS: -2.09 Total: -38.02 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 1.90 Total: 48.38 kcal Total: -84.80 -2.18 -86.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034780140.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.191 kcal (2) G-P(sol) polarization free energy of solvation -84.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds