Wall clock time and date at job start Tue Mar 31 2020 19:22:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42907 * 1
3 3 C 1.35351 * 116.99432 * 2 1
4 4 N 1.30547 * 125.44028 * 179.97438 * 3 2 1
5 5 C 1.36333 * 108.38096 * 179.97438 * 4 3 2
6 6 C 1.47367 * 126.41111 * 179.97438 * 5 4 3
7 7 O 1.21630 * 119.99779 * 186.95914 * 6 5 4
8 8 N 1.34775 * 120.00318 * 6.96149 * 6 5 4
9 9 C 1.46928 * 120.55251 * 5.83661 * 8 6 5
10 10 C 1.52873 * 108.94240 * 234.30066 * 9 8 6
11 11 C 1.52105 * 109.51937 * 306.94095 * 10 9 8
12 12 C 1.54398 * 110.51607 * 295.75056 * 11 10 9
13 13 C 1.54456 * 102.87007 * 276.65999 * 12 11 10
14 14 N 1.47081 * 107.29836 * 338.49784 * 13 12 11
15 15 C 1.36939 * 125.62364 * 179.01253 * 14 13 12
16 16 H 1.08003 * 119.99680 * 180.02562 * 15 14 13
17 17 C 1.38815 * 120.00269 * 0.02562 * 15 14 13
18 18 N 1.31614 * 119.99714 * 0.02562 * 17 15 14
19 19 Si 1.86797 * 119.99889 * 180.02562 * 17 15 14
20 20 H 1.48501 * 109.47257 * 60.00139 * 19 17 15
21 21 H 1.48493 * 109.47268 * 180.02562 * 19 17 15
22 22 H 1.48506 * 109.47205 * 300.00121 * 19 17 15
23 23 C 1.47572 * 108.74359 * 359.01132 * 14 13 12
24 24 C 1.52110 * 111.60060 * 59.15393 * 11 10 9
25 25 C 1.46936 * 120.55420 * 186.11213 * 8 6 5
26 26 C 1.35910 * 107.17335 * 0.02562 * 5 4 3
27 27 O 1.34196 * 125.45096 * 359.69515 * 3 2 1
28 28 H 1.09000 * 109.47447 * 59.99927 * 1 2 3
29 29 H 1.09008 * 109.46926 * 179.97438 * 1 2 3
30 30 H 1.08996 * 109.47277 * 299.99475 * 1 2 3
31 31 H 1.08996 * 109.59961 * 354.10684 * 9 8 6
32 32 H 1.08995 * 109.60526 * 114.58332 * 9 8 6
33 33 H 1.09007 * 109.54667 * 186.86539 * 10 9 8
34 34 H 1.08994 * 109.32971 * 66.89518 * 10 9 8
35 35 H 1.09002 * 110.73117 * 35.01048 * 12 11 10
36 36 H 1.08998 * 110.72922 * 158.31587 * 12 11 10
37 37 H 1.09004 * 109.87761 * 97.92894 * 13 12 11
38 38 H 1.09000 * 109.87322 * 219.07258 * 13 12 11
39 39 H 0.97005 * 119.99326 * 179.97438 * 18 17 15
40 40 H 1.08998 * 110.37610 * 264.49134 * 23 14 13
41 41 H 1.08998 * 110.37431 * 142.14566 * 23 14 13
42 42 H 1.08997 * 109.47252 * 180.71105 * 24 11 10
43 43 H 1.09003 * 109.46939 * 60.70531 * 24 11 10
44 44 H 1.08995 * 109.59844 * 245.41128 * 25 8 6
45 45 H 1.08995 * 109.60195 * 5.89185 * 25 8 6
46 46 H 1.08005 * 126.45573 * 179.97438 * 26 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0434 1.2060 0.0000
4 7 3.3347 1.3978 0.0005
5 6 3.5700 2.7407 -0.0003
6 6 4.8891 3.3977 0.0004
7 8 4.9671 4.6048 0.1273
8 7 6.0090 2.6610 -0.1395
9 6 5.9256 1.2213 -0.4209
10 6 6.7358 0.4625 0.6302
11 6 8.1448 1.0317 0.6942
12 6 8.8836 0.7991 -0.6414
13 6 9.4136 -0.6442 -0.4946
14 7 9.4592 -0.9492 0.9435
15 6 9.8552 -2.1387 1.4944
16 1 9.8528 -2.2643 2.5671
17 6 10.2598 -3.1830 0.6743
18 7 10.2632 -3.0297 -0.6329
19 14 10.7993 -4.8058 1.4259
20 1 9.6810 -5.3819 2.2150
21 1 11.1805 -5.7496 0.3447
22 1 11.9659 -4.5757 2.3155
23 6 9.0078 0.2382 1.6946
24 6 8.1356 2.5112 1.0475
25 6 7.3336 3.2830 -0.0071
26 6 2.3602 3.3600 -0.0007
27 8 1.4227 2.3958 -0.0058
28 1 -0.3634 0.5138 -0.8900
29 1 -0.3633 -1.0277 -0.0005
30 1 -0.3633 0.5137 0.8900
31 1 4.8848 0.9004 -0.3798
32 1 6.3346 1.0179 -1.4105
33 1 6.7822 -0.5932 0.3627
34 1 6.2557 0.5702 1.6027
35 1 8.1937 0.8733 -1.4820
36 1 9.7079 1.5033 -0.7541
37 1 8.7423 -1.3387 -0.9998
38 1 10.4143 -0.7166 -0.9208
39 1 10.5462 -3.7594 -1.2060
40 1 9.8634 0.8334 2.0134
41 1 8.4111 -0.0619 2.5559
42 1 9.1590 2.8854 1.0716
43 1 7.6755 2.6481 2.0261
44 1 7.8538 3.2424 -0.9641
45 1 7.2206 4.3207 0.3066
46 1 2.1847 4.4257 -0.0009
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001035212025.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:22:04
Heat of formation + Delta-G solvation = 5.577398 kcal
Electronic energy + Delta-G solvation = -29976.118198 eV
Core-core repulsion = 25869.906319 eV
Total energy + Delta-G solvation = -4106.211880 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-43.77646 -40.25835 -39.17424 -38.46617 -35.77875 -35.24349 -32.95099 -31.17194
-30.44683 -30.28525 -28.61711 -27.84680 -26.84137 -24.81415 -23.69223 -23.35511
-22.63453 -22.02533 -20.47014 -19.96500 -18.81307 -17.92206 -17.83297 -17.20574
-16.77123 -16.44945 -15.87437 -15.59842 -15.52351 -14.97610 -14.91507 -14.48258
-14.02254 -13.79117 -13.67816 -13.52337 -13.23852 -12.80585 -12.70090 -12.50607
-12.34036 -12.02600 -11.81705 -11.68194 -11.33094 -11.16035 -10.97833 -10.85445
-10.76967 -10.49433 -10.36697 -10.10813 -10.03120 -9.83613 -9.60488 -9.47761
-9.32238 -9.01814 -8.51089 -8.39827 -6.71960 -5.62578 -2.94927 0.85436
1.58503 1.76796 2.41737 2.99935 3.17772 3.45528 3.49627 3.50828
4.13840 4.44427 4.55369 4.57047 4.60415 4.75192 4.95563 5.08534
5.13234 5.20656 5.24529 5.36826 5.43559 5.57581 5.61070 5.69983
5.78318 5.90246 6.08917 6.09318 6.11532 6.23963 6.30529 6.32618
6.44439 6.54666 6.65842 6.74245 6.77311 6.82703 6.97147 7.11016
7.19680 7.50588 7.65327 7.74339 7.92218 8.08817 8.35402 9.31566
9.92091 10.59577 11.48945
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.013256 B = 0.003245 C = 0.002729
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2111.746338 B = 8627.412914 C =10256.727408
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.023 3.977
2 O -0.242 6.242
3 C 0.383 3.617
4 N -0.447 5.447
5 C -0.039 4.039
6 C 0.599 3.401
7 O -0.547 6.547
8 N -0.582 5.582
9 C 0.065 3.935
10 C -0.102 4.102
11 C -0.074 4.074
12 C -0.137 4.137
13 C 0.181 3.819
14 N -0.604 5.604
15 C -0.225 4.225
16 H 0.075 0.925
17 C -0.009 4.009
18 N -0.922 5.922
19 Si 0.910 3.090
20 H -0.286 1.286
21 H -0.291 1.291
22 H -0.286 1.286
23 C 0.147 3.853
24 C -0.115 4.115
25 C 0.114 3.886
26 C -0.001 4.001
27 O -0.226 6.226
28 H 0.067 0.933
29 H 0.120 0.880
30 H 0.067 0.933
31 H 0.146 0.854
32 H 0.065 0.935
33 H 0.086 0.914
34 H 0.056 0.944
35 H 0.059 0.941
36 H 0.054 0.946
37 H 0.044 0.956
38 H 0.038 0.962
39 H 0.251 0.749
40 H 0.016 0.984
41 H 0.036 0.964
42 H 0.075 0.925
43 H 0.062 0.938
44 H 0.071 0.929
45 H 0.088 0.912
46 H 0.236 0.764
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.113 12.394 -0.774 23.638
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 O -0.149 6.149
3 C 0.138 3.862
4 N -0.193 5.193
5 C -0.157 4.157
6 C 0.386 3.614
7 O -0.426 6.426
8 N -0.312 5.312
9 C -0.057 4.057
10 C -0.141 4.141
11 C -0.075 4.075
12 C -0.175 4.175
13 C 0.056 3.944
14 N -0.330 5.330
15 C -0.354 4.354
16 H 0.093 0.907
17 C -0.205 4.205
18 N -0.570 5.570
19 Si 0.740 3.260
20 H -0.213 1.213
21 H -0.217 1.217
22 H -0.213 1.213
23 C 0.020 3.980
24 C -0.154 4.154
25 C -0.008 4.008
26 C -0.073 4.073
27 O -0.117 6.117
28 H 0.086 0.914
29 H 0.138 0.862
30 H 0.086 0.914
31 H 0.163 0.837
32 H 0.083 0.917
33 H 0.104 0.896
34 H 0.075 0.925
35 H 0.077 0.923
36 H 0.073 0.927
37 H 0.062 0.938
38 H 0.056 0.944
39 H 0.061 0.939
40 H 0.034 0.966
41 H 0.054 0.946
42 H 0.094 0.906
43 H 0.080 0.920
44 H 0.090 0.910
45 H 0.106 0.894
46 H 0.252 0.748
Dipole moment (debyes) X Y Z Total
from point charges -19.553 12.049 -0.799 22.981
hybrid contribution -0.286 -0.548 0.357 0.714
sum -19.839 11.501 -0.442 22.936
Atomic orbital electron populations
1.23321 0.75097 1.05807 1.02925 1.86443 1.23684 1.15782 1.88995
1.23822 0.85866 0.79496 0.97013 1.70952 1.08491 1.15273 1.24596
1.21733 0.95880 0.88229 1.09840 1.16737 0.81955 0.85618 0.77126
1.90801 1.86399 1.13032 1.52342 1.47970 1.05190 1.10511 1.67578
1.22972 1.06524 0.77613 0.98590 1.21440 0.93527 1.00630 0.98458
1.21080 0.95519 0.93331 0.97549 1.22925 0.98541 1.00322 0.95705
1.21127 0.99095 0.88954 0.85208 1.44493 1.77323 1.09700 1.01493
1.19011 1.36625 0.88309 0.91417 0.90695 1.24765 1.01975 0.98228
0.95517 1.69965 1.53663 1.31599 1.01784 0.86231 0.78444 0.83583
0.77694 1.21258 1.21685 1.21323 1.21468 0.94206 0.88748 0.93535
1.21727 0.99997 0.95356 0.98274 1.21724 0.81701 0.97598 0.99807
1.24896 0.84810 0.93729 1.03827 1.84384 1.39543 1.15872 1.71927
0.91399 0.86197 0.91388 0.83735 0.91695 0.89573 0.92492 0.92251
0.92711 0.93764 0.94366 0.93867 0.96597 0.94619 0.90636 0.91966
0.91038 0.89377 0.74810
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.11 10.73 101.05 1.08 1.19 16
2 O -0.24 -2.32 10.55 -40.98 -0.43 -2.75 16
3 C 0.38 4.25 8.98 52.22 0.47 4.72 16
4 N -0.45 -5.98 7.78 -11.72 -0.09 -6.07 16
5 C -0.04 -0.49 6.71 -82.99 -0.56 -1.05 16
6 C 0.60 8.80 7.68 -12.55 -0.10 8.70 16
7 O -0.55 -8.82 16.33 5.25 0.09 -8.74 16
8 N -0.58 -8.58 2.97 -174.16 -0.52 -9.09 16
9 C 0.06 0.99 5.99 -3.87 -0.02 0.96 16
10 C -0.10 -1.77 4.84 -27.25 -0.13 -1.90 16
11 C -0.07 -1.29 0.55 -154.10 -0.08 -1.38 16
12 C -0.14 -2.57 4.92 -25.23 -0.12 -2.69 16
13 C 0.18 4.43 4.99 -2.96 -0.01 4.41 16
14 N -0.60 -15.58 3.39 -170.32 -0.58 -16.16 16
15 C -0.23 -6.38 10.28 -15.06 -0.15 -6.53 16
16 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16
17 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16
18 N -0.92 -27.40 10.31 55.49 0.57 -26.83 16
19 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16
20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16
21 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16
22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16
23 C 0.15 3.10 6.15 -2.87 -0.02 3.08 16
24 C -0.12 -1.69 4.84 -27.01 -0.13 -1.82 16
25 C 0.11 1.58 6.15 -3.63 -0.02 1.55 16
26 C 0.00 0.00 11.94 29.90 0.36 0.35 16
27 O -0.23 -2.09 10.20 -17.73 -0.18 -2.27 16
28 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16
29 H 0.12 0.29 8.14 -51.92 -0.42 -0.13 16
30 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16
31 H 0.15 2.22 3.66 -77.37 -0.28 1.93 16
32 H 0.06 1.00 6.56 -51.93 -0.34 0.66 16
33 H 0.09 1.72 7.82 -51.93 -0.41 1.32 16
34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16
35 H 0.06 1.04 6.19 -51.93 -0.32 0.71 16
36 H 0.05 0.97 7.98 -51.93 -0.41 0.56 16
37 H 0.04 1.19 7.39 -51.93 -0.38 0.81 16
38 H 0.04 1.05 7.50 -51.93 -0.39 0.66 16
39 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16
40 H 0.02 0.34 7.99 -51.93 -0.41 -0.07 16
41 H 0.04 0.76 8.02 -51.93 -0.42 0.34 16
42 H 0.08 1.05 8.09 -51.93 -0.42 0.62 16
43 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16
44 H 0.07 0.95 7.62 -51.93 -0.40 0.56 16
45 H 0.09 1.20 7.03 -51.93 -0.37 0.84 16
46 H 0.24 1.42 8.06 -52.48 -0.42 1.00 16
LS Contribution 363.35 15.07 5.48 5.48
Total: -1.00 -33.76 363.35 -6.86 -40.62
By element:
Atomic # 1 Polarization: 5.75 SS G_CDS: -6.63 Total: -0.88 kcal
Atomic # 6 Polarization: 8.80 SS G_CDS: 0.46 Total: 9.26 kcal
Atomic # 7 Polarization: -57.53 SS G_CDS: -0.61 Total: -58.15 kcal
Atomic # 8 Polarization: -13.24 SS G_CDS: -0.53 Total: -13.76 kcal
Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal
Total LS contribution 5.48 Total: 5.48 kcal
Total: -33.76 -6.86 -40.62 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001035212025.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 46.202 kcal
(2) G-P(sol) polarization free energy of solvation -33.762 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.440 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.863 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.625 kcal
(6) G-S(sol) free energy of system = (1) + (5) 5.577 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds