Wall clock time and date at job start Tue Mar 31 2020 19:22:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42907 * 1
3 3 C 1.35351 * 116.99432 * 2 1
4 4 N 1.30547 * 125.44028 * 179.97438 * 3 2 1
5 5 C 1.36333 * 108.38096 * 179.97438 * 4 3 2
6 6 C 1.47367 * 126.41111 * 179.97438 * 5 4 3
7 7 O 1.21630 * 119.99779 * 186.95914 * 6 5 4
8 8 N 1.34775 * 120.00318 * 6.96149 * 6 5 4
9 9 C 1.46928 * 120.55251 * 5.83661 * 8 6 5
10 10 C 1.52873 * 108.94240 * 234.30066 * 9 8 6
11 11 C 1.52105 * 109.51937 * 306.94095 * 10 9 8
12 12 C 1.54398 * 110.51607 * 295.75056 * 11 10 9
13 13 C 1.54456 * 102.87007 * 276.65999 * 12 11 10
14 14 N 1.47081 * 107.29836 * 338.49784 * 13 12 11
15 15 C 1.36939 * 125.62364 * 179.01253 * 14 13 12
16 16 H 1.08003 * 119.99680 * 180.02562 * 15 14 13
17 17 C 1.38815 * 120.00269 * 0.02562 * 15 14 13
18 18 N 1.31614 * 119.99714 * 0.02562 * 17 15 14
19 19 Si 1.86797 * 119.99889 * 180.02562 * 17 15 14
20 20 H 1.48501 * 109.47257 * 60.00139 * 19 17 15
21 21 H 1.48493 * 109.47268 * 180.02562 * 19 17 15
22 22 H 1.48506 * 109.47205 * 300.00121 * 19 17 15
23 23 C 1.47572 * 108.74359 * 359.01132 * 14 13 12
24 24 C 1.52110 * 111.60060 * 59.15393 * 11 10 9
25 25 C 1.46936 * 120.55420 * 186.11213 * 8 6 5
26 26 C 1.35910 * 107.17335 * 0.02562 * 5 4 3
27 27 O 1.34196 * 125.45096 * 359.69515 * 3 2 1
28 28 H 1.09000 * 109.47447 * 59.99927 * 1 2 3
29 29 H 1.09008 * 109.46926 * 179.97438 * 1 2 3
30 30 H 1.08996 * 109.47277 * 299.99475 * 1 2 3
31 31 H 1.08996 * 109.59961 * 354.10684 * 9 8 6
32 32 H 1.08995 * 109.60526 * 114.58332 * 9 8 6
33 33 H 1.09007 * 109.54667 * 186.86539 * 10 9 8
34 34 H 1.08994 * 109.32971 * 66.89518 * 10 9 8
35 35 H 1.09002 * 110.73117 * 35.01048 * 12 11 10
36 36 H 1.08998 * 110.72922 * 158.31587 * 12 11 10
37 37 H 1.09004 * 109.87761 * 97.92894 * 13 12 11
38 38 H 1.09000 * 109.87322 * 219.07258 * 13 12 11
39 39 H 0.97005 * 119.99326 * 179.97438 * 18 17 15
40 40 H 1.08998 * 110.37610 * 264.49134 * 23 14 13
41 41 H 1.08998 * 110.37431 * 142.14566 * 23 14 13
42 42 H 1.08997 * 109.47252 * 180.71105 * 24 11 10
43 43 H 1.09003 * 109.46939 * 60.70531 * 24 11 10
44 44 H 1.08995 * 109.59844 * 245.41128 * 25 8 6
45 45 H 1.08995 * 109.60195 * 5.89185 * 25 8 6
46 46 H 1.08005 * 126.45573 * 179.97438 * 26 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0434 1.2060 0.0000
4 7 3.3347 1.3978 0.0005
5 6 3.5700 2.7407 -0.0003
6 6 4.8891 3.3977 0.0004
7 8 4.9671 4.6048 0.1273
8 7 6.0090 2.6610 -0.1395
9 6 5.9256 1.2213 -0.4209
10 6 6.7358 0.4625 0.6302
11 6 8.1448 1.0317 0.6942
12 6 8.8836 0.7991 -0.6414
13 6 9.4136 -0.6442 -0.4946
14 7 9.4592 -0.9492 0.9435
15 6 9.8552 -2.1387 1.4944
16 1 9.8528 -2.2643 2.5671
17 6 10.2598 -3.1830 0.6743
18 7 10.2632 -3.0297 -0.6329
19 14 10.7993 -4.8058 1.4259
20 1 9.6810 -5.3819 2.2150
21 1 11.1805 -5.7496 0.3447
22 1 11.9659 -4.5757 2.3155
23 6 9.0078 0.2382 1.6946
24 6 8.1356 2.5112 1.0475
25 6 7.3336 3.2830 -0.0071
26 6 2.3602 3.3600 -0.0007
27 8 1.4227 2.3958 -0.0058
28 1 -0.3634 0.5138 -0.8900
29 1 -0.3633 -1.0277 -0.0005
30 1 -0.3633 0.5137 0.8900
31 1 4.8848 0.9004 -0.3798
32 1 6.3346 1.0179 -1.4105
33 1 6.7822 -0.5932 0.3627
34 1 6.2557 0.5702 1.6027
35 1 8.1937 0.8733 -1.4820
36 1 9.7079 1.5033 -0.7541
37 1 8.7423 -1.3387 -0.9998
38 1 10.4143 -0.7166 -0.9208
39 1 10.5462 -3.7594 -1.2060
40 1 9.8634 0.8334 2.0134
41 1 8.4111 -0.0619 2.5559
42 1 9.1590 2.8854 1.0716
43 1 7.6755 2.6481 2.0261
44 1 7.8538 3.2424 -0.9641
45 1 7.2206 4.3207 0.3066
46 1 2.1847 4.4257 -0.0009
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001035212025.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:22:03
Heat of formation + Delta-G solvation = -18.530055 kcal
Electronic energy + Delta-G solvation = -29977.163576 eV
Core-core repulsion = 25869.906319 eV
Total energy + Delta-G solvation = -4107.257258 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.89 seconds
Orbital eigenvalues (eV)
-44.58165 -41.50895 -40.01403 -39.67335 -37.22369 -36.18951 -34.71023 -32.61291
-32.02303 -31.13994 -30.41665 -28.42642 -28.28326 -26.31851 -25.19658 -24.51628
-23.70323 -23.12687 -21.93048 -21.40807 -19.90819 -19.18855 -18.64820 -18.59891
-18.01651 -17.45633 -16.97928 -16.77745 -16.42267 -16.26117 -16.24355 -15.92346
-15.62076 -15.04896 -14.91360 -14.72628 -14.51568 -14.14613 -13.97488 -13.89063
-13.41699 -13.15934 -13.08017 -12.96693 -12.92748 -12.70499 -12.47148 -12.27009
-12.09891 -12.07847 -11.99116 -11.80277 -11.59523 -11.44133 -11.34220 -11.04905
-10.66226 -10.55298 -9.86336 -9.55403 -8.83312 -7.81057 -5.15601 0.03689
0.85493 0.88322 1.45774 1.49267 1.55463 1.70041 1.99350 2.16000
2.51917 3.19037 3.36456 3.65173 3.73585 3.76233 3.86355 3.97802
4.06015 4.20807 4.21971 4.26299 4.26697 4.38365 4.39826 4.53705
4.57965 4.66180 4.66870 4.72767 4.80781 4.86595 4.89880 5.00429
5.06382 5.09505 5.20191 5.29068 5.40501 5.46143 5.49155 5.61496
5.74296 5.82190 5.85080 6.23707 6.27113 6.48059 7.00061 7.14671
7.82562 8.48098 9.28930
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.013256 B = 0.003245 C = 0.002729
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2111.746338 B = 8627.412914 C =10256.727408
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.014 3.986
2 O -0.259 6.259
3 C 0.385 3.615
4 N -0.482 5.482
5 C -0.077 4.077
6 C 0.601 3.399
7 O -0.564 6.564
8 N -0.587 5.587
9 C 0.076 3.924
10 C -0.094 4.094
11 C -0.061 4.061
12 C -0.120 4.120
13 C 0.191 3.809
14 N -0.624 5.624
15 C -0.242 4.242
16 H 0.078 0.922
17 C -0.065 4.065
18 N -0.950 5.950
19 Si 0.977 3.023
20 H -0.278 1.278
21 H -0.294 1.294
22 H -0.278 1.278
23 C 0.142 3.858
24 C -0.106 4.106
25 C 0.115 3.885
26 C 0.035 3.965
27 O -0.213 6.213
28 H 0.079 0.921
29 H 0.141 0.859
30 H 0.078 0.922
31 H 0.150 0.850
32 H 0.062 0.938
33 H 0.051 0.949
34 H 0.055 0.945
35 H 0.075 0.925
36 H 0.072 0.928
37 H 0.008 0.992
38 H 0.001 0.999
39 H 0.245 0.755
40 H 0.024 0.976
41 H 0.033 0.967
42 H 0.091 0.909
43 H 0.065 0.935
44 H 0.080 0.920
45 H 0.096 0.904
46 H 0.271 0.729
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.864 14.001 -0.191 25.963
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.080 4.080
2 O -0.167 6.167
3 C 0.140 3.860
4 N -0.228 5.228
5 C -0.194 4.194
6 C 0.389 3.611
7 O -0.444 6.444
8 N -0.317 5.317
9 C -0.046 4.046
10 C -0.132 4.132
11 C -0.062 4.062
12 C -0.158 4.158
13 C 0.066 3.934
14 N -0.350 5.350
15 C -0.372 4.372
16 H 0.096 0.904
17 C -0.258 4.258
18 N -0.599 5.599
19 Si 0.805 3.195
20 H -0.204 1.204
21 H -0.220 1.220
22 H -0.204 1.204
23 C 0.017 3.983
24 C -0.144 4.144
25 C -0.006 4.006
26 C -0.038 4.038
27 O -0.104 6.104
28 H 0.098 0.902
29 H 0.159 0.841
30 H 0.097 0.903
31 H 0.167 0.833
32 H 0.080 0.920
33 H 0.070 0.930
34 H 0.074 0.926
35 H 0.093 0.907
36 H 0.091 0.909
37 H 0.026 0.974
38 H 0.019 0.981
39 H 0.055 0.945
40 H 0.042 0.958
41 H 0.051 0.949
42 H 0.109 0.891
43 H 0.084 0.916
44 H 0.099 0.901
45 H 0.114 0.886
46 H 0.286 0.714
Dipole moment (debyes) X Y Z Total
from point charges -21.326 13.679 -0.191 25.336
hybrid contribution 0.141 -1.058 0.215 1.089
sum -21.185 12.621 0.025 24.659
Atomic orbital electron populations
1.23704 0.72579 1.07662 1.04039 1.86455 1.26252 1.15200 1.88772
1.23751 0.85637 0.80269 0.96356 1.70693 1.10087 1.15980 1.26085
1.21570 0.96044 0.88473 1.13317 1.16920 0.82481 0.85426 0.76275
1.90781 1.86815 1.13605 1.53227 1.47983 1.05784 1.10031 1.67917
1.22800 1.06426 0.77985 0.97383 1.21297 0.93883 0.98920 0.99099
1.20997 0.94632 0.95095 0.95464 1.22775 0.99348 0.96581 0.97059
1.20862 0.96362 0.91840 0.84355 1.44776 1.77288 1.10402 1.02510
1.19410 1.36290 0.89626 0.91833 0.90386 1.25609 1.02565 1.01655
0.96001 1.70197 1.54605 1.32149 1.02960 0.85181 0.78233 0.79266
0.76824 1.20382 1.21986 1.20434 1.21666 0.94873 0.87754 0.94039
1.21655 1.01292 0.92675 0.98790 1.21759 0.81312 0.97675 0.99885
1.25567 0.83641 0.94766 0.99780 1.84433 1.39042 1.15406 1.71482
0.90202 0.84059 0.90324 0.83341 0.91968 0.93007 0.92630 0.90675
0.90937 0.97375 0.98107 0.94542 0.95813 0.94882 0.89104 0.91583
0.90134 0.88562 0.71362
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.01 0.10 10.73 113.37 1.22 1.31 16
2 O -0.26 -4.67 10.55 -64.20 -0.68 -5.35 16
3 C 0.39 8.03 8.98 130.43 1.17 9.20 16
4 N -0.48 -12.50 7.78 -419.41 -3.26 -15.76 16
5 C -0.08 -1.84 6.71 40.31 0.27 -1.57 16
6 C 0.60 16.66 7.68 86.65 0.67 17.33 16
7 O -0.56 -17.02 16.33 -4.13 -0.07 -17.09 16
8 N -0.59 -16.45 2.97 -823.16 -2.44 -18.89 16
9 C 0.08 2.30 5.99 86.26 0.52 2.81 16
10 C -0.09 -3.26 4.84 30.26 0.15 -3.12 16
11 C -0.06 -2.10 0.55 -51.92 -0.03 -2.13 16
12 C -0.12 -4.45 4.92 31.56 0.16 -4.30 16
13 C 0.19 9.72 4.99 86.76 0.43 10.15 16
14 N -0.62 -33.08 3.39 -692.76 -2.35 -35.43 16
15 C -0.24 -14.07 10.28 84.03 0.86 -13.21 16
16 H 0.08 4.35 7.83 -2.91 -0.02 4.32 16
17 C -0.07 -3.83 5.49 84.86 0.47 -3.36 16
18 N -0.95 -58.63 10.31 21.65 0.22 -58.41 16
19 Si 0.98 47.03 29.55 68.60 2.03 49.05 16
20 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16
21 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16
22 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16
23 C 0.14 6.00 6.15 86.55 0.53 6.54 16
24 C -0.11 -2.87 4.84 30.41 0.15 -2.73 16
25 C 0.12 2.94 6.15 86.41 0.53 3.47 16
26 C 0.03 0.56 11.94 67.28 0.80 1.37 16
27 O -0.21 -3.40 10.20 18.98 0.19 -3.21 16
28 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16
29 H 0.14 0.37 8.14 -2.38 -0.02 0.35 16
30 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16
31 H 0.15 4.55 3.66 -52.62 -0.19 4.36 16
32 H 0.06 1.90 6.56 -2.39 -0.02 1.88 16
33 H 0.05 2.16 7.82 -2.38 -0.02 2.14 16
34 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16
35 H 0.07 2.58 6.19 -2.39 -0.01 2.56 16
36 H 0.07 2.46 7.98 -2.39 -0.02 2.45 16
37 H 0.01 0.46 7.39 -2.38 -0.02 0.44 16
38 H 0.00 0.04 7.50 -2.39 -0.02 0.02 16
39 H 0.25 14.76 8.31 -92.70 -0.77 13.99 16
40 H 0.02 0.99 7.99 -2.39 -0.02 0.97 16
41 H 0.03 1.40 8.02 -2.39 -0.02 1.39 16
42 H 0.09 2.24 8.09 -2.39 -0.02 2.22 16
43 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16
44 H 0.08 1.92 7.62 -2.39 -0.02 1.91 16
45 H 0.10 2.37 7.03 -2.39 -0.02 2.35 16
46 H 0.27 2.17 8.06 -2.91 -0.02 2.15 16
Total: -1.00 -75.64 363.35 2.36 -73.28
By element:
Atomic # 1 Polarization: 9.23 SS G_CDS: 0.82 Total: 10.05 kcal
Atomic # 6 Polarization: 13.87 SS G_CDS: 7.89 Total: 21.76 kcal
Atomic # 7 Polarization: -120.67 SS G_CDS: -7.83 Total: -128.49 kcal
Atomic # 8 Polarization: -25.10 SS G_CDS: -0.55 Total: -25.65 kcal
Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.05 kcal
Total: -75.64 2.36 -73.28 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001035212025.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 54.748 kcal
(2) G-P(sol) polarization free energy of solvation -75.637 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.889 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.359 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.278 kcal
(6) G-S(sol) free energy of system = (1) + (5) -18.530 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.89 seconds