Wall clock time and date at job start Tue Mar 31 2020 19:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35733 * 116.99719 * 2 1 4 4 C 1.41850 * 126.78374 * 180.02562 * 3 2 1 5 5 C 1.36671 * 103.81149 * 180.02562 * 4 3 2 6 6 C 1.47536 * 126.87900 * 179.97438 * 5 4 3 7 7 O 1.21572 * 120.00316 * 0.02562 * 6 5 4 8 8 N 1.34781 * 119.99575 * 179.97438 * 6 5 4 9 9 C 1.48158 * 127.02952 * 359.97438 * 8 6 5 10 10 C 1.55051 * 103.31692 * 140.99260 * 9 8 6 11 11 C 1.54152 * 102.73165 * 36.98998 * 10 9 8 12 12 C 1.47608 * 127.02456 * 179.97438 * 8 6 5 13 13 C 1.52496 * 110.06154 * 97.48037 * 11 10 9 14 14 C 1.53131 * 109.60133 * 181.75176 * 13 11 10 15 15 C 1.53195 * 109.32133 * 299.47178 * 14 13 11 16 16 N 1.47014 * 108.84933 * 55.04870 * 15 14 13 17 17 C 1.36944 * 120.65723 * 125.97655 * 16 15 14 18 18 H 1.07990 * 120.00111 * 332.07746 * 17 16 15 19 19 C 1.38810 * 119.99482 * 152.08449 * 17 16 15 20 20 N 1.31619 * 120.00374 * 343.20523 * 19 17 16 21 21 Si 1.86801 * 120.00050 * 163.21321 * 19 17 16 22 22 H 1.48503 * 109.46846 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47519 * 119.99408 * 21 19 17 24 24 H 1.48499 * 109.46788 * 239.99750 * 21 19 17 25 25 C 1.47025 * 118.65717 * 306.00156 * 16 15 14 26 26 O 1.34663 * 106.23665 * 0.25724 * 5 4 3 27 27 N 1.20878 * 111.63416 * 359.52966 * 26 5 4 28 28 H 1.08996 * 109.47359 * 299.99715 * 1 2 3 29 29 H 1.08999 * 109.47728 * 59.99853 * 1 2 3 30 30 H 1.09004 * 109.47011 * 180.02562 * 1 2 3 31 31 H 1.07996 * 128.09798 * 359.97438 * 4 3 2 32 32 H 1.08995 * 110.65403 * 259.44977 * 9 8 6 33 33 H 1.09004 * 110.65345 * 22.37538 * 9 8 6 34 34 H 1.08996 * 110.76238 * 278.67972 * 10 9 8 35 35 H 1.08996 * 110.75770 * 155.29702 * 10 9 8 36 36 H 1.09004 * 109.97326 * 85.99157 * 12 8 6 37 37 H 1.09000 * 110.01022 * 324.73921 * 12 8 6 38 38 H 1.09002 * 109.44620 * 61.71450 * 13 11 10 39 39 H 1.08990 * 109.43189 * 301.77986 * 13 11 10 40 40 H 1.08994 * 109.50039 * 59.43116 * 14 13 11 41 41 H 1.08994 * 109.50343 * 179.51245 * 14 13 11 42 42 H 1.08995 * 109.56714 * 174.91051 * 15 14 13 43 43 H 1.08999 * 109.56614 * 295.26395 * 15 14 13 44 44 H 0.97002 * 120.00325 * 180.02562 * 20 19 17 45 45 H 1.09000 * 109.58398 * 293.00488 * 25 16 15 46 46 H 1.09004 * 109.70029 * 172.66062 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4430 1.4505 -0.0005 5 6 3.5389 2.8139 0.0003 6 6 4.7783 3.6143 0.0008 7 8 5.8602 3.0596 -0.0001 8 7 4.7111 4.9604 0.0011 9 6 3.4853 5.7926 0.0005 10 6 3.8477 6.9629 0.9507 11 6 5.3350 7.2121 0.6310 12 6 5.8438 5.9069 0.0021 13 6 5.4715 8.3656 -0.3570 14 6 6.9490 8.5755 -0.7007 15 6 7.7229 8.9169 0.5765 16 7 7.4877 7.8601 1.5712 17 6 8.5388 7.2122 2.1635 18 1 9.4782 7.1159 1.6396 19 6 8.3965 6.6792 3.4373 20 7 7.3994 7.0654 4.2047 21 14 9.6204 5.4140 4.0624 22 1 10.6396 5.1515 3.0147 23 1 10.2875 5.9318 5.2838 24 1 8.9067 4.1524 4.3851 25 6 6.1014 7.5128 1.9164 26 8 2.2757 3.2802 0.0070 27 7 1.4684 2.3805 0.0009 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 4.2441 0.7263 -0.0006 32 1 3.2728 6.1632 -1.0022 33 1 2.6372 5.2280 0.3881 34 1 3.7206 6.6684 1.9924 35 1 3.2503 7.8454 0.7219 36 1 6.1761 6.0909 -1.0196 37 1 6.6659 5.5042 0.5938 38 1 5.0700 9.2753 0.0895 39 1 4.9172 8.1322 -1.2659 40 1 7.3538 7.6632 -1.1386 41 1 7.0440 9.3946 -1.4135 42 1 8.7879 8.9782 0.3526 43 1 7.3752 9.8721 0.9698 44 1 7.3002 6.6932 5.0950 45 1 5.6330 8.3501 2.4337 46 1 6.0925 6.6339 2.5612 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040171457.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:10 Heat of formation + Delta-G solvation = 8.921057 kcal Electronic energy + Delta-G solvation = -30185.410824 eV Core-core repulsion = 26079.343936 eV Total energy + Delta-G solvation = -4106.066888 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -46.16520 -41.50149 -39.98800 -39.82829 -37.40206 -34.90983 -34.40931 -33.49194 -32.56851 -31.71064 -30.21781 -28.66984 -27.78865 -27.11826 -24.94798 -24.59513 -23.91082 -23.66072 -21.92705 -21.66680 -19.70893 -19.24160 -19.15174 -18.51378 -18.07127 -17.44903 -17.03962 -16.89194 -16.69025 -16.51489 -15.80089 -15.75555 -15.36580 -15.32565 -15.02842 -14.77263 -14.51528 -14.38083 -13.85488 -13.60134 -13.22675 -13.21380 -13.11559 -12.93281 -12.86274 -12.82463 -12.60118 -12.56564 -12.25726 -12.14180 -11.86830 -11.82663 -11.55475 -11.35649 -11.10112 -10.99321 -10.95960 -10.53814 -10.50988 -9.84740 -8.62929 -7.87368 -5.29670 -0.46827 0.89070 1.25651 1.39795 1.44906 1.51656 1.52196 1.77073 2.08344 2.49172 2.88832 3.27356 3.39597 3.56780 3.64135 3.75404 3.88245 3.93211 4.00104 4.24307 4.26105 4.30491 4.33106 4.42255 4.49928 4.52792 4.61758 4.62166 4.72184 4.81998 4.93343 4.99926 5.02328 5.09249 5.16481 5.19458 5.25334 5.41764 5.44259 5.54639 5.61735 5.71190 5.79415 5.80285 6.25560 6.40665 6.63074 6.88168 7.17505 7.90507 8.39554 9.17916 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013649 B = 0.003545 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.993662 B = 7895.723272 C = 9127.799215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.289 6.289 3 C 0.207 3.793 4 C -0.155 4.155 5 C -0.050 4.050 6 C 0.612 3.388 7 O -0.552 6.552 8 N -0.604 5.604 9 C 0.097 3.903 10 C -0.118 4.118 11 C -0.086 4.086 12 C 0.135 3.865 13 C -0.088 4.088 14 C -0.129 4.129 15 C 0.137 3.863 16 N -0.610 5.610 17 C -0.250 4.250 18 H 0.061 0.939 19 C -0.046 4.046 20 N -0.929 5.929 21 Si 0.948 3.052 22 H -0.269 1.269 23 H -0.288 1.288 24 H -0.299 1.299 25 C 0.199 3.801 26 O 0.121 5.879 27 N -0.395 5.395 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.137 0.863 31 H 0.200 0.800 32 H 0.112 0.888 33 H 0.097 0.903 34 H 0.057 0.943 35 H 0.117 0.883 36 H 0.080 0.920 37 H 0.043 0.957 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.052 0.948 41 H 0.086 0.914 42 H 0.046 0.954 43 H 0.017 0.983 44 H 0.247 0.753 45 H 0.001 0.999 46 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.603 -5.609 -12.931 21.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.195 6.195 3 C 0.010 3.990 4 C -0.178 4.178 5 C -0.116 4.116 6 C 0.398 3.602 7 O -0.431 6.431 8 N -0.335 5.335 9 C -0.024 4.024 10 C -0.156 4.156 11 C -0.089 4.089 12 C 0.013 3.987 13 C -0.126 4.126 14 C -0.168 4.168 15 C 0.012 3.988 16 N -0.333 5.333 17 C -0.381 4.381 18 H 0.079 0.921 19 C -0.241 4.241 20 N -0.576 5.576 21 Si 0.778 3.222 22 H -0.194 1.194 23 H -0.215 1.215 24 H -0.226 1.226 25 C 0.073 3.927 26 O 0.056 5.944 27 N -0.121 5.121 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.155 0.845 31 H 0.217 0.783 32 H 0.130 0.870 33 H 0.115 0.885 34 H 0.076 0.924 35 H 0.135 0.865 36 H 0.098 0.902 37 H 0.062 0.938 38 H 0.088 0.912 39 H 0.106 0.894 40 H 0.070 0.930 41 H 0.104 0.896 42 H 0.065 0.935 43 H 0.035 0.965 44 H 0.056 0.944 45 H 0.019 0.981 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -17.178 -5.923 -12.788 22.220 hybrid contribution 1.498 -1.144 1.168 2.218 sum -15.680 -7.067 -11.620 20.756 Atomic orbital electron populations 1.23416 0.74620 1.06401 1.02667 1.86239 1.24705 1.19518 1.89061 1.21899 0.90475 0.86240 1.00381 1.22387 0.95193 0.94794 1.05428 1.23641 0.86509 0.93730 1.07691 1.16281 0.85327 0.80850 0.77776 1.90879 1.28280 1.71222 1.52756 1.48910 1.11549 1.03737 1.69303 1.23075 0.85921 0.91278 1.02082 1.22738 0.94450 0.99240 0.99186 1.21665 0.95601 0.94058 0.97532 1.22040 0.87973 0.87937 1.00757 1.21400 0.96368 0.96627 0.98192 1.21978 0.96036 1.01570 0.97239 1.21120 0.98018 0.90012 0.89640 1.44351 1.01924 1.40204 1.46797 1.19425 0.94000 1.28696 0.95937 0.92124 1.25584 0.99855 1.02715 0.95980 1.70142 1.34266 1.44763 1.08427 0.85480 0.79304 0.79308 0.78132 1.19352 1.21500 1.22606 1.20495 0.82850 0.97431 0.91921 1.85013 1.11361 1.29306 1.68714 1.73935 1.16053 0.96937 1.25131 0.92081 0.91704 0.84473 0.78264 0.87011 0.88496 0.92387 0.86520 0.90188 0.93798 0.91180 0.89411 0.92963 0.89581 0.93528 0.96511 0.94401 0.98111 0.93773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.73 113.37 1.22 1.51 16 2 O -0.29 -5.93 10.57 -90.56 -0.96 -6.89 16 3 C 0.21 4.96 8.00 85.78 0.69 5.65 16 4 C -0.16 -3.93 10.97 22.80 0.25 -3.68 16 5 C -0.05 -1.38 7.09 24.36 0.17 -1.21 16 6 C 0.61 20.71 7.89 86.69 0.68 21.40 16 7 O -0.55 -23.07 17.25 -3.94 -0.07 -23.14 16 8 N -0.60 -18.77 3.30 -813.39 -2.68 -21.45 16 9 C 0.10 2.15 6.75 86.76 0.59 2.74 16 10 C -0.12 -2.98 6.15 31.69 0.19 -2.78 16 11 C -0.09 -2.79 0.62 -51.89 -0.03 -2.82 16 12 C 0.13 4.75 5.57 86.35 0.48 5.23 16 13 C -0.09 -2.28 4.40 30.47 0.13 -2.15 16 14 C -0.13 -3.77 5.87 30.70 0.18 -3.59 16 15 C 0.14 5.37 6.50 86.35 0.56 5.93 16 16 N -0.61 -29.69 2.76 -699.66 -1.93 -31.62 16 17 C -0.25 -13.87 9.59 84.03 0.81 -13.06 16 18 H 0.06 3.35 7.88 -2.92 -0.02 3.33 16 19 C -0.05 -2.62 4.92 84.86 0.42 -2.20 16 20 N -0.93 -55.53 11.19 21.65 0.24 -55.28 16 21 Si 0.95 47.17 29.59 68.60 2.03 49.20 16 22 H -0.27 -12.88 7.11 99.48 0.71 -12.18 16 23 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 24 H -0.30 -15.23 7.11 99.48 0.71 -14.52 16 25 C 0.20 9.07 3.59 86.16 0.31 9.37 16 26 O 0.12 2.98 8.42 65.63 0.55 3.53 16 27 N -0.39 -9.62 11.50 -172.02 -1.98 -11.59 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.14 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.20 4.51 8.06 -2.91 -0.02 4.49 16 32 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.10 1.97 5.55 -2.39 -0.01 1.96 16 34 H 0.06 1.73 7.84 -2.39 -0.02 1.71 16 35 H 0.12 2.17 7.83 -2.39 -0.02 2.15 16 36 H 0.08 2.56 6.54 -2.38 -0.02 2.55 16 37 H 0.04 2.03 7.52 -2.39 -0.02 2.01 16 38 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.05 1.62 6.65 -2.39 -0.02 1.60 16 41 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.05 1.84 7.94 -2.39 -0.02 1.82 16 43 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 45 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 46 H 0.04 2.40 6.09 -2.38 -0.01 2.39 16 Total: -1.00 -72.04 368.03 2.85 -69.19 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: 1.00 Total: 7.74 kcal Atomic # 6 Polarization: 13.67 SS G_CDS: 6.65 Total: 20.32 kcal Atomic # 7 Polarization: -113.60 SS G_CDS: -6.35 Total: -119.95 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: -0.47 Total: -26.50 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.20 kcal Total: -72.04 2.85 -69.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040171457.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.113 kcal (2) G-P(sol) polarization free energy of solvation -72.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds